[mpich-discuss] Problems with configuring MPICH with cross compiler

[junli gu]

Hi everyone!

   I am doing some research work on running MPI on simulator. The simulator
requires that the binaries of mpi program must be alpha machine's. So I am
trying to configure MPICH with a cross compiler called alpha-gcc. THe cross
compiler works well. But it seems that the MPICH2-1.2 does not support cross
compiling set up:

 I read the installation file of MPICH for the cross compiled information. I
write a build file like this:

  "export
DRIVER_PATH=/opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu/
  export GCC=${DRIVER_PATH}/bin/alpha-gcc
  export CC=${DRIVER_PATH}/bin/alpha-gcc
  export CXX=${DRIVER_PATH}/bin/g++
  export AR=${DRIVER_PATH}/bin/ar
  export LD=${DRIVER_PATH}/bin/ld
  ./configure --prefix=/home/junligu/shared/MPICH_alpha2 --enable-cxx
--disable-f77 --with-device=ch3:nemesis --with-atomic-primitives=no
--target=alpha-unknown-linux-gnu --host=i386-unknown-linux-gnu  "

DRIVER_PATH is the path of cross compiler.

And there is configuaratuin error:
./configure: line 40902: ./conftest: cannot execute binary file
configure: WARNING: Unable to run the program to determine the size of
MPI_Offset
configure: error: Unable to convert MPI_SIZEOF_OFFSET to a hex string.  This
is either because we are building on a very strange platform or there is a
bug somewhere in configure.

I have the output of cinfugre in tee.txt. The other file is config.log.

It seems whether the communication channel is nemesis or shm, there will be
configure error. It keeps on checking the X86 system instead of the target
alpha system.

Does the configure of MPICH2-1.2 mot support cross compile well or I missed
something?

Please help!

-- 
************************************************
Gu Junli--谷俊丽
PHD Candidate of Tsinghua University
Beijing 100084,China
Tel: 86-10-62795139

************************************************
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Configuring MPICH2 version 1.2 with  '--prefix=/home/junligu/shared/MPICH_alpha2' '--enable-cxx' '--disable-f77' '--with-device=ch3:nemesis' '--with-atomic-primitives=no' '--target=alpha-unknown-linux-gnu' '--host=i386-unknown-linux-gnu' 'host_alias=i386-unknown-linux-gnu' 'target_alias=alpha-unknown-linux-gnu' 'CC=/opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc' 'CXX=/opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/g++'
Running on system: Linux hastur 2.6.28-15-generic #52-Ubuntu SMP Wed Sep 9 10:49:34 UTC 2009 i686 GNU/Linux
Executing mpich2prereq in /home/junligu/shared/mpich2-1.2/src/mpid/ch3 with nemesis
Executing mpich2prereq in /home/junligu/shared/mpich2-1.2/src/mpid/ch3/channels/nemesis
sourcing /home/junligu/shared/mpich2-1.2/src/pm/mpd/mpich2prereq
sourcing /home/junligu/shared/mpich2-1.2/src/pm/hydra/mpich2prereq
sourcing /home/junligu/shared/mpich2-1.2/src/pm/gforker/mpich2prereq
sourcing /home/junligu/shared/mpich2-1.2/src/pm/mpd/setup_pm
checking for i386-unknown-linux-gnu-gcc... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... yes
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc accepts -g... yes
checking for /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc -E
checking whether the compiler defines __func__... yes
checking whether the compiler defines __FUNC__... 
checking whether the compiler sets __FUNCTION__... 
checking whether C compiler accepts option -O2... yes
checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes
checking for type of weak symbol alias support... pragma weak
checking whether __attribute__ ((weak)) allowed... yes
checking whether __attribute ((weak_import)) allowed... yes
checking for multiple weak symbol support... yes
checking whether we are using the GNU C++ compiler... yes
checking whether /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/g++ accepts -g... yes
checking whether the C++ compiler /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/g++ can build an executable... yes
checking whether C++ compiler works with string... yes
checking whether the compiler supports exceptions... yes
checking whether the compiler recognizes bool as a built-in type... yes
checking whether the compiler implements namespaces... yes
checking whether <iostream> available... yes
checking whether the compiler implements the namespace std... yes
checking whether <math> available... no
checking whether C++ compiler accepts option -O2... yes
checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes
checking for perl... /usr/bin/perl
checking for ar... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/ar
checking for ranlib... ranlib
checking for killall... killall
checking for a BSD-compatible install... /usr/bin/install -c
checking whether install works... yes
checking for i386-unknown-linux-gnu-ranlib... (cached) ranlib
checking whether install breaks libraries... no
checking whether mkdir -p works... yes
checking for make... make
checking whether clock skew breaks make... no
checking whether make supports include... yes
checking whether make allows comments in actions... yes
checking for virtual path format... VPATH
checking whether make sets CFLAGS... no
checking for bash... /bin/bash
checking whether /bin/bash supports arrays... yes
checking for doctext... false
checking for location of doctext style files... unavailable
checking for an ANSI C-conforming const... yes
checking for volatile... yes
checking for restrict... __restrict
checking for inline... inline
checking whether __attribute__ allowed... yes
checking whether __attribute__((format)) allowed... yes
checking whether byte ordering is bigendian... no
checking whether C compiler allows unaligned doubles... unknown
checking whether /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc supports __func__... yes
Using gcc to determine dependencies
checking whether long double is supported... yes
checking whether long long is supported... yes
checking for max C struct integer alignment... 
checking for max C struct floating point alignment... 
checking for max C struct alignment of structs with doubles... 
checking for max C struct floating point alignment with long doubles... 
checking if alignment of structs with doubles is based on position... 
checking if alignment of structs with long long ints is based on position... 
checking if double alignment breaks rules, find actual alignment... 
checking for alignment restrictions on pointers... pointer
checking size of char... 1
checking size of unsigned char... 1
checking size of short... 2
checking size of unsigned short... 2
checking size of int... 4
checking size of unsigned int... 4
checking size of long... 8
checking size of unsigned long... 8
checking size of long long... 8
checking size of unsigned long long... 8
checking size of float... 4
checking size of double... 8
checking size of long double... 8
checking size of void *... 8
checking for ANSI C header files... no
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking size of wchar_t... 4
checking size of float_int... 8
checking size of double_int... 16
checking size of long_int... 16
checking size of short_int... 8
checking size of two_int... 8
checking size of long_double_int... 16
checking sys/bitypes.h usability... yes
checking sys/bitypes.h presence... yes
checking for sys/bitypes.h... yes
checking inttypes.h usability... yes
checking inttypes.h presence... yes
checking for inttypes.h... yes
checking stdint.h usability... yes
checking stdint.h presence... yes
checking for stdint.h... yes
checking for int8_t... yes
checking for int16_t... yes
checking for int32_t... yes
checking for int64_t... yes
checking for uint8_t... yes
checking for uint16_t... yes
checking for uint32_t... yes
checking for uint64_t... yes
checking size of _Bool... 1
checking size of float _Complex... 8
checking size of double _Complex... 16
checking size of long double _Complex... 16
checking for _Bool... yes
checking for float _Complex... yes
checking for double _Complex... yes
checking for long double _Complex... yes
checking size of bool... 1
checking how to run the C++ preprocessor... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/g++ -E
checking complex usability... yes
checking complex presence... yes
checking for complex... yes
checking size of Complex... 8
checking size of DoubleComplex... 16
checking size of LongDoubleComplex... 16
checking if char * pointers use byte addresses... 
checking for alignment restrictions on ... unknown
checking for alignment restrictions on int32_t... unknown
checking size of MPIR_Bsend_data_t... 88
checking for gcc __asm__ and pentium cmpxchgl instruction... not checking when cross compiling
checking for gcc __asm__ and AMD x86_64 cmpxchgq instruction... not checking when cross compiling
checking for gcc __asm__ and IA64 xchg4 instruction... not checking when cross compiling
checking for ANSI C header files... (cached) no
checking stdlib.h usability... yes
checking stdlib.h presence... yes
checking for stdlib.h... yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking sys/types.h usability... yes
checking sys/types.h presence... yes
checking for sys/types.h... yes
checking string.h usability... yes
checking string.h presence... yes
checking for string.h... yes
checking for inttypes.h... (cached) yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking for stddef.h... (cached) yes
checking errno.h usability... yes
checking errno.h presence... yes
checking for errno.h... yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking unistd.h usability... yes
checking unistd.h presence... yes
checking for unistd.h... yes
checking endian.h usability... yes
checking endian.h presence... yes
checking for endian.h... yes
checking assert.h usability... yes
checking assert.h presence... yes
checking for assert.h... yes
checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking for sys/uio.h... yes
checking for size_t... yes
checking for setitimer... yes
checking for alarm... yes
checking for vsnprintf... yes
checking for vsprintf... yes
checking whether vsnprintf needs a declaration... no
checking for strerror... yes
checking for strncasecmp... yes
checking for snprintf... yes
checking whether snprintf needs a declaration... no
checking for va_copy... yes
checking for variable argument list macro functionality... yes
checking valgrind.h usability... no
checking valgrind.h presence... no
checking for valgrind.h... no
checking memcheck.h usability... no
checking memcheck.h presence... no
checking for memcheck.h... no
checking valgrind/valgrind.h usability... no
checking valgrind/valgrind.h presence... no
checking for valgrind/valgrind.h... no
checking valgrind/memcheck.h usability... no
checking valgrind/memcheck.h presence... no
checking for valgrind/memcheck.h... no
checking for working alloca.h... yes
checking for alloca... yes
checking for strdup... yes
checking whether strdup needs a declaration... no
checking for mkstemp... yes
checking whether mkstemp needs a declaration... no
checking for fdopen... yes
checking whether fdopen needs a declaration... yes
checking for putenv... yes
checking whether putenv needs a declaration... no
checking for clock_gettime... no
checking for clock_getres... no
checking for gethrtime... no
checking for gettimeofday... yes
sourcing /home/junligu/shared/mpich2-1.2/src/mpid/ch3/setup_device
RUNNING SETUP_DEVICE FOR THE CH3 DEVICE
sourcing /home/junligu/shared/mpich2-1.2/src/mpid/ch3/channels/nemesis/setup_channel
RUNNING SETUP_CHANNEL FOR THE NEMESIS CHANNEL
sourcing /home/junligu/shared/mpich2-1.2/src/mpid/common/locks/setup
RUNNING SETUP FOR THE PROCESS LOCKS MODULE
SPARC V9 inline spin locks supported...no
SPARC V8 inline spin locks supported...no
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
checking for fgrep... /bin/fgrep
checking for pthread_key_create in -lpthread... yes
checking for pthread_yield... yes
checking for pthread_key_create... yes
checking for pthread_cleanup_push... no
checking whether pthread_cleanup_push is available (may be a macro in pthread.h)... no
checking whether pthread.h defines PTHREAD_MUTEX_RECURSIVE_NP... yes
checking whether pthread.h defines PTHREAD_MUTEX_RECURSIVE... no
checking whether pthread.h defines PTHREAD_MUTEX_ERRORCHECK_NP... yes
checking whether pthread.h defines PTHREAD_MUTEX_ERRORCHECK... no
checking for sched_yield... yes
checking for yield... no
checking for usleep... yes
checking for sleep... yes
checking for select... yes
checking for getpid... yes
checking for sched_setaffinity... yes
checking for sched_getaffinity... yes
checking for bindprocessor... no
checking for thread_policy_set... no
checking whether cpu_set_t available... yes
checking whether the CPU_SET and CPU_ZERO macros are defined... no
configure: configuring subsystem in src/openpa
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for i386-unknown-linux-gnu-strip... no
checking for strip... strip
checking for a thread-safe mkdir -p... mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking for i386-unknown-linux-gnu-gcc... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... yes
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc accepts -g... yes
checking for /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc option to accept ISO C89... none needed
checking for style of include used by make... GNU
checking dependency style of /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc... gcc3
checking for i386-unknown-linux-gnu-ranlib... ranlib
checking whether to enable assertions... yes
checking how to run the C preprocessor... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
checking atomic.h usability... no
checking atomic.h presence... no
checking for atomic.h... no
checking intrin.h usability... no
checking intrin.h presence... no
checking for intrin.h... no
checking for inttypes.h... (cached) yes
checking for stdint.h... (cached) yes
checking for C/C++ restrict keyword... __restrict
checking for inline... inline
checking for pthread_create in -lpthread... yes
checking for pthread_yield... yes
checking if 100 threads can be run at once... N/A
checking size of void *... 8
checking size of int... 4
checking whether __attribute__ allowed... yes
checking whether __attribute__((format)) allowed... yes
checking if compiler rejects bogus asm statements... yes
checking whether to enable strict fairness checks... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating test/Makefile
config.status: creating src/config.h
config.status: src/config.h is unchanged
config.status: executing src/opa_config.h commands
config.status: creating src/opa_config.h - prefix OPA for src/config.h defines
config.status: src/opa_config.h is unchanged
config.status: executing depfiles commands
configure: configuring subsystem in src/mpid/ch3
RUNNING CONFIGURE FOR CH3 DEVICE
checking for make... make
checking whether clock skew breaks make... no
checking whether make supports include... yes
checking whether make allows comments in actions... yes
checking for virtual path format... VPATH
checking whether make sets CFLAGS... yes
16
checking for i386-unknown-linux-gnu-gcc... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... yes
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc accepts -g... yes
checking for /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking assert.h usability... yes
checking assert.h presence... yes
checking for assert.h... yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking for string.h... (cached) yes
checking for sys/types.h... (cached) yes
checking sys/uio.h usability... yes
checking sys/uio.h presence... yes
checking for sys/uio.h... yes
checking uuid/uuid.h usability... no
checking uuid/uuid.h presence... no
checking for uuid/uuid.h... no
checking time.h usability... yes
checking time.h presence... yes
checking for time.h... yes
checking ctype.h usability... yes
checking ctype.h presence... yes
checking for ctype.h... yes
checking for unistd.h... (cached) yes
checking arpa/inet.h usability... yes
checking arpa/inet.h presence... yes
checking for arpa/inet.h... yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking for net/if.h... yes
checking for pid_t... yes
checking for inet_pton... yes
checking for gethostname... yes
checking whether gethostname needs a declaration... no
checking for CFUUIDCreate... no
checking for uuid_generate... no
checking for time... yes
checking for library containing uuid_generate... no
checking whether CPP accepts variable length argument lists... yes
checking whether byte ordering is bigendian... no
checking whether we can use struct ifconf... yes
checking size of int... 4
checking size of long... 8
checking size of long long... 8
checking size of void *... 8
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating util/Makefile
config.status: creating util/shm/Makefile
config.status: creating util/shmbase/Makefile
config.status: creating channels/Makefile
config.status: creating localdefs
config.status: creating include/mpid_thread.h
config.status: creating include/mpidi_ch3_conf.h
config.status: include/mpidi_ch3_conf.h is unchanged
config.status: executing default-1 commands
copying ./../common/thread/mpid_thread_mpe.c to src/mpid_thread.c
=== configuring in channels/nemesis (/home/junligu/shared/mpich2-1.2/src/mpid/ch3/channels/nemesis)
configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/junligu/shared/MPICH_alpha2'  '--enable-cxx' '--disable-f77' '--with-device=ch3:nemesis' '--with-atomic-primitives=no' '--target=alpha-unknown-linux-gnu' '--host=i386-unknown-linux-gnu' 'host_alias=i386-unknown-linux-gnu' 'target_alias=alpha-unknown-linux-gnu' 'CC=/opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc' 'CXX=/opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/g++' 'CFLAGS= -O2' 'LIBS= -lpthread' 'CPPFLAGS= -I/home/junligu/shared/mpich2-1.2/src/openpa/src -I/home/junligu/shared/mpich2-1.2/src/openpa/src -DUSE_PROCESS_LOCKS' --cache-file=/dev/null --srcdir=.
RUNNING CONFIGURE FOR THE NEMESIS CHANNEL
checking for make... make
checking whether clock skew breaks make... no
checking whether make supports include... yes
checking whether make allows comments in actions... yes
checking for virtual path format... VPATH
checking whether make sets CFLAGS... yes
checking for i386-unknown-linux-gnu-gcc... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... yes
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc accepts -g... yes
checking for /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc option to accept ISO C89... none needed
checking for inline... inline
checking how to run the C preprocessor... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for pid_t... yes
checking for net/if.h... yes
checking assert.h usability... yes
checking assert.h presence... yes
checking for assert.h... yes
checking netdb.h usability... yes
checking netdb.h presence... yes
checking for netdb.h... yes
checking for unistd.h... (cached) yes
checking sched.h usability... yes
checking sched.h presence... yes
checking for sched.h... yes
checking sys/mman.h usability... yes
checking sys/mman.h presence... yes
checking for sys/mman.h... yes
checking sys/ioctl.h usability... yes
checking sys/ioctl.h presence... yes
checking for sys/ioctl.h... yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking sys/sockio.h usability... no
checking sys/sockio.h presence... no
checking for sys/sockio.h... no
checking for sys/types.h... (cached) yes
checking errno.h usability... yes
checking errno.h presence... yes
checking for errno.h... yes
checking sys/ipc.h usability... yes
checking sys/ipc.h presence... yes
checking for sys/ipc.h... yes
checking sys/shm.h usability... yes
checking sys/shm.h presence... yes
checking for sys/shm.h... yes
checking for netinet/in.h... yes
checking for mkstemp... yes
checking for rand... yes
checking for srand... yes
checking for OpenPA atomic primitive availability... yes (emulated)
checking for mmap... yes
checking for munmap... yes
configure: Using a memory-mapped file for shared memory
checking whether struct hostent contains h_addr_list... yes
checking whether we can use struct ifconf... yes
checking knem_io.h usability... no
checking knem_io.h presence... no
checking for knem_io.h... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating nemesis/Makefile
config.status: creating nemesis/src/Makefile
config.status: creating nemesis/utils/Makefile
config.status: creating nemesis/utils/replacements/Makefile
config.status: creating nemesis/utils/monitor/Makefile
config.status: creating nemesis/netmod/Makefile
config.status: creating nemesis/netmod/elan/Makefile
config.status: creating nemesis/netmod/gm/Makefile
config.status: creating nemesis/netmod/mx/Makefile
config.status: creating nemesis/netmod/tcp/Makefile
config.status: creating nemesis/netmod/ib/Makefile
config.status: creating nemesis/netmod/psm/Makefile
config.status: creating nemesis/netmod/newmad/Makefile
config.status: creating nemesis/netmod/none/Makefile
config.status: creating localdefs
config.status: creating nemesis/include/mpid_nem_net_module_defs.h
config.status: creating nemesis/src/mpid_nem_net_array.c
config.status: creating include/mpidi_ch3i_nemesis_conf.h
config.status: include/mpidi_ch3i_nemesis_conf.h is unchanged
configure: configuring subsystem in src/mpid/common/locks
RUNNING CONFIGURE FOR LOCKS
checking for make... make
checking whether clock skew breaks make... no
checking whether make supports include... yes
checking whether make allows comments in actions... yes
checking for virtual path format... VPATH
checking whether make sets CFLAGS... yes
checking for ar... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/ar
checking for ranlib... ranlib
checking for i386-unknown-linux-gnu-gcc... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... yes
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc accepts -g... yes
checking for /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc option to accept ISO C89... none needed
checking for yield... no
checking for sched_yield... yes
checking for usleep... yes
checking for sleep... yes
checking for select... yes
checking for mutex_init... no
checking for compare_and_swap... no
checking for pthread_mutexattr_init... yes
checking for pthread_mutexattr_setpshared... yes
checking how to run the C preprocessor... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
checking sched.h usability... yes
checking sched.h presence... yes
checking for sched.h... yes
checking for inline... inline
checking for working volatile... yes
checking for an ANSI C-conforming const... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating mpid_locksconf.h
config.status: mpid_locksconf.h is unchanged
configure: configuring subsystem in src/mpid/common/locks
RUNNING CONFIGURE FOR LOCKS
checking for make... make
checking whether clock skew breaks make... no
checking whether make supports include... yes
checking whether make allows comments in actions... yes
checking for virtual path format... VPATH
checking whether make sets CFLAGS... yes
checking for ar... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/ar
checking for ranlib... ranlib
checking for i386-unknown-linux-gnu-gcc... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... yes
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc accepts -g... yes
checking for /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc option to accept ISO C89... none needed
checking for yield... no
checking for sched_yield... yes
checking for usleep... yes
checking for sleep... yes
checking for select... yes
checking for mutex_init... no
checking for compare_and_swap... no
checking for pthread_mutexattr_init... yes
checking for pthread_mutexattr_setpshared... yes
checking how to run the C preprocessor... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
checking sched.h usability... yes
checking sched.h presence... yes
checking for sched.h... yes
checking for inline... inline
checking for working volatile... yes
checking for an ANSI C-conforming const... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating mpid_locksconf.h
config.status: mpid_locksconf.h is unchanged
configure: configuring subsystem in src/mpi/romio
Configuring with args --prefix=/home/junligu/shared/MPICH_alpha2 --enable-cxx --disable-f77 --with-device=ch3:nemesis --with-atomic-primitives=no --target=alpha-unknown-linux-gnu --host=i386-unknown-linux-gnu host_alias=i386-unknown-linux-gnu target_alias=alpha-unknown-linux-gnu CC=/opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc CXX=/opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/g++
checking for architecture... LINUX
ROMIO home directory is /home/junligu/shared/mpich2-1.2/src/mpi/romio
checking for i386-unknown-linux-gnu-gcc... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... yes
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc accepts -g... yes
checking for /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc -E
checking for memalign... yes
checking for inline... inline
checking how to run the C preprocessor... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for unistd.h... (cached) yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking malloc.h usability... yes
checking malloc.h presence... yes
checking for malloc.h... yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking size of int... 4
checking size of void *... 8
checking for int large enough for pointers... no
checking size of long long... 8
Overriding Array test for MPICH2
checking for weak symbol support... pragma weak
checking that weak symbols are visible to other files... yes
checking that the compiler correctly implements weak symbols... yes
checking whether struct flock compatible with MPI_Offset... yes
checking for pvfs2-config... notfound
checking configured file systems... testfs ufs nfs
checking for library containing aio_write... -lrt
checking signal.h usability... yes
checking signal.h presence... yes
checking for signal.h... yes
checking if aio.h exists and can be compiled... yes
checking if sys/aio.h exists and can be compiled... no
checking whether aio routines can be used... no: aio routines disabled when cross compiling
checking for obsolete two-argument aio_write... no: cannot test when cross-compiling
checking for obsolete two-argument aio_suspend... no: cannot test when cross compiling
checking for aio_fildes member of aiocb structure... yes
checking for aio_whence member of aiocb structure... no
checking for aio_handle member of aiocb structure... no
checking for aio_reqprio member of aiocb structure... yes
checking for aio_sigevent member of aiocb structure... yes
checking sys/vfs.h usability... yes
checking sys/vfs.h presence... yes
checking for sys/vfs.h... yes
checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking sys/mount.h usability... yes
checking sys/mount.h presence... yes
checking for sys/mount.h... yes
checking sys/statvfs.h usability... yes
checking sys/statvfs.h presence... yes
checking for sys/statvfs.h... yes
checking whether struct statfs properly defined... yes
checking for f_fstypename member of statfs structure... no
checking for sys/stat.h... (cached) yes
checking for sys/types.h... (cached) yes
checking for unistd.h... (cached) yes
checking for stat... yes
checking for st_fstype member of stat structure... no
checking for sys/types.h... (cached) yes
checking for sys/statvfs.h... (cached) yes
checking for sys/vfs.h... (cached) yes
checking for statvfs... yes
checking for f_basetype member of statvfs structure... no
checking for unistd.h... (cached) yes
checking for large file defines... yes
checking whether off64_t is an scalar type... yes
checking for strerror... yes
checking for doctext... false
checking for strdup... yes
checking whether strdup needs a declaration... no
checking for snprintf... yes
checking whether snprintf needs a declaration... no
checking for lstat... yes
checking whether lstat needs a declaration... yes
checking for readlink... yes
checking whether readlink needs a declaration... no
checking for fsync... yes
checking whether fsync needs a declaration... no
checking for ftruncate... yes
checking whether ftruncate needs a declaration... no
checking for lseek64... yes
checking whether lseek64 needs a declaration... no
checking for unistd.h... (cached) yes
checking for large file defines... yes
setting SYSDEP_INC to 
checking for restrict... __restrict
checking whether __attribute__ allowed... yes
checking whether __attribute__((format)) allowed... yes
setting CC to /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc
setting F77 to :
setting TEST_CC to /home/junligu/shared/mpich2-1.2/bin/mpicc
setting TEST_F77 to /home/junligu/shared/mpich2-1.2/bin/mpif77
setting CFLAGS to  -O2  -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_ROMIOCONF_H -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64
setting USER_CFLAGS to 
setting USER_FFLAGS to 
configure: creating ./config.status
config.status: creating Makefile
config.status: creating localdefs
config.status: creating mpi-io/Makefile
config.status: creating mpi2-other/info/Makefile
config.status: creating mpi2-other/array/Makefile
config.status: creating adio/common/Makefile
config.status: creating test/Makefile
config.status: creating test/misc.c
config.status: creating test/large_file.c
config.status: creating test/runtests
config.status: creating test-internal/Makefile
config.status: creating util/romioinstall
config.status: creating include/mpio.h
config.status: creating include/mpiof.h
config.status: creating adio/ad_nfs/Makefile
config.status: creating adio/ad_ufs/Makefile
config.status: creating adio/ad_bgl/Makefile
config.status: creating adio/ad_bglockless/Makefile
config.status: creating adio/ad_panfs/Makefile
config.status: creating adio/ad_xfs/Makefile
config.status: creating adio/ad_sfs/Makefile
config.status: creating adio/ad_pfs/Makefile
config.status: creating adio/ad_testfs/Makefile
config.status: creating adio/ad_pvfs/Makefile
config.status: creating adio/ad_pvfs2/Makefile
config.status: creating adio/ad_gridftp/Makefile
config.status: creating adio/ad_lustre/Makefile
config.status: creating adio/ad_zoidfs/Makefile
config.status: creating mpi-io/fortran/Makefile
config.status: creating mpi2-other/info/fortran/Makefile
config.status: creating mpi2-other/array/fortran/Makefile
config.status: creating test/fmisc.f
config.status: creating test/fcoll_test.f
config.status: creating test/pfcoll_test.f
config.status: creating test/fperf.f
config.status: creating mpi-io/glue/mpich2/Makefile
config.status: creating mpi-io/glue/mpich1/Makefile
config.status: creating mpi-io/glue/default/Makefile
config.status: creating common/dataloop/Makefile
config.status: creating adio/include/romioconf.h
config.status: executing default-1 commands
configure: configuring subsystem in src/pmi/simple
RUNNING CONFIGURE FOR THE SIMPLE PMI
checking for make... make
checking whether clock skew breaks make... no
checking whether make supports include... yes
checking whether make allows comments in actions... yes
checking for virtual path format... VPATH
checking whether make sets CFLAGS... yes
checking for i386-unknown-linux-gnu-gcc... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... yes
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc accepts -g... yes
checking for /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for unistd.h... (cached) yes
checking for string.h... (cached) yes
checking for stdlib.h... (cached) yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking for strings.h... (cached) yes
checking assert.h usability... yes
checking assert.h presence... yes
checking for assert.h... yes
checking for snprintf... yes
checking whether snprintf needs a declaration... no
checking for strncasecmp... yes
checking for sys/types.h... (cached) yes
checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking for sys/socket.h... (cached) yes
checking netinet/in.h usability... yes
checking netinet/in.h presence... yes
checking for netinet/in.h... yes
checking netinet/tcp.h usability... yes
checking netinet/tcp.h presence... yes
checking for netinet/tcp.h... yes
checking sys/un.h usability... yes
checking sys/un.h presence... yes
checking for sys/un.h... yes
checking netdb.h usability... yes
checking netdb.h presence... yes
checking for netdb.h... yes
checking for library containing socket... none required
checking for library containing gethostbyname... none required
checking for socket... yes
checking for setsockopt... yes
checking for gethostbyname... yes
checking whether socklen_t is defined (in sys/socket.h if present)... yes
checking whether struct hostent contains h_addr_list... yes
checking whether __attribute__ allowed... yes
checking whether __attribute__((format)) allowed... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating localdefs
config.status: creating pmiconf.h
config.status: pmiconf.h is unchanged
configure: configuring subsystem in src/pm/mpd
Configuring with args --prefix=/home/junligu/shared/MPICH_alpha2 --enable-cxx --disable-f77 --with-device=ch3:nemesis --with-atomic-primitives=no --target=alpha-unknown-linux-gnu --host=i386-unknown-linux-gnu host_alias=i386-unknown-linux-gnu target_alias=alpha-unknown-linux-gnu CC=/opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc CXX=/opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/g++
checking for i386-unknown-linux-gnu-gcc... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... yes
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc accepts -g... yes
checking for /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc option to accept ISO C89... none needed
checking whether make sets $(MAKE)... yes
checking whether ln -s works... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether install /usr/bin/install -c works... yes
Using INSTALL=/usr/bin/install -c
checking for totalview... no
checking for python2.6... python2.6
checking for python2.5... python2.5
checking for python2.4... no
checking for python2.3... no
checking for python2.2... no
checking for python2... no
checking for python... python
checking that python2.6 is a valid python version... yes
checking that the cPickle module is available for python2.6... yes
checking for library containing socket... none required
checking how to run the C preprocessor... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/wait.h that is POSIX.1 compatible... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking for strings.h... (cached) yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking for unistd.h... (cached) yes
checking for stdlib.h... (cached) yes
checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking for putenv... yes
checking for socket... yes
checking for snprintf... yes
checking whether snprintf needs a declaration... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating mpdconf.h
configure: configuring subsystem in src/pm/hydra
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for i386-unknown-linux-gnu-strip... no
checking for strip... strip
checking for a thread-safe mkdir -p... mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking for i386-unknown-linux-gnu-gcc... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... yes
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc accepts -g... yes
checking for /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc option to accept ISO C89... none needed
checking for style of include used by make... GNU
checking dependency style of /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc... gcc3
checking how to run the C preprocessor... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for size_t... yes
checking for i386-unknown-linux-gnu-ranlib... ranlib
checking whether __attribute__ allowed... yes
checking whether __attribute__((format)) allowed... yes
checking whether the compiler defines __func__... yes
checking whether the compiler defines __FUNC__... 
checking whether the compiler sets __FUNCTION__... 
checking for unistd.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for strings.h... (cached) yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking for sys/types.h... (cached) yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking sched.h usability... yes
checking sched.h presence... yes
checking for sched.h... yes
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
checking for sys/stat.h... (cached) yes
checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking netinet/in.h usability... yes
checking netinet/in.h presence... yes
checking for netinet/in.h... yes
checking netinet/tcp.h usability... yes
checking netinet/tcp.h presence... yes
checking for netinet/tcp.h... yes
checking sys/un.h usability... yes
checking sys/un.h presence... yes
checking for sys/un.h... yes
checking netdb.h usability... yes
checking netdb.h presence... yes
checking for netdb.h... yes
checking for pthread_key_create in -lpthread... yes
checking for fgrep... /bin/grep -F
checking for socket in -lsocket... no
checking for gethostbyname in -lnsl... yes
checking for gettimeofday... yes
checking for time... yes
checking for strdup... yes
checking for sigaction... yes
checking for signal... yes
checking for usleep... yes
checking for alloca... no
checking for unsetenv... yes
checking for strerror... yes
checking for strsignal... yes
checking for putenv... yes
checking for stat... yes
checking for putenv... (cached) yes
checking whether putenv needs a declaration... no
checking for environ in unistd.h... no
checking for manually declared extern environ... yes
checking boot-strap server... ssh,rsh,fork,slurm
checking communication subsystem... none
checking resource management kernel... dummy,pbs
checking process manager... pmiserv
checking user interface... mpiexec
checking communication subsystem... none
checking debugging support... no
checking warnings... no
checking process binding library... plpa
checking if plpa works correctly... yes
checking checkpointing library... none
checking whether the compiler allows __VA_ARGS__... checking for strsignal... (cached) yes
checking whether strsignal needs a declaration... yes
checking for sigaction... (cached) yes
checking for signal... (cached) yes
checking for sigset... yes
checking for struct sigaction and sa_handler... yes
checking for gethostname... yes
checking whether gethostname needs a declaration... no
checking for a BSD-compatible install... /usr/bin/install -c
configure: creating ./config.status
config.status: creating Makefile
config.status: creating bootstrap/src/bsci_init.c
config.status: creating bootstrap/include/bsci.h
config.status: creating rmk/src/rmki_init.c
config.status: creating rmk/include/rmki.h
config.status: creating css/src/cssi_init.c
config.status: creating css/include/cssi.h
config.status: creating include/hydra_config.h
config.status: include/hydra_config.h is unchanged
config.status: executing depfiles commands
=== configuring in mpl (/home/junligu/shared/mpich2-1.2/src/pm/hydra/mpl)
configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/junligu/shared/MPICH_alpha2'  '--enable-cxx' '--disable-f77' '--with-device=ch3:nemesis' '--with-atomic-primitives=no' '--target=alpha-unknown-linux-gnu' '--host=i386-unknown-linux-gnu' 'host_alias=i386-unknown-linux-gnu' 'target_alias=alpha-unknown-linux-gnu' 'CC=/opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc' 'CXX=/opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/g++' 'CFLAGS= -O2' 'LDFLAGS=' 'LIBS= -lpthread   -lrt   ' 'CPPFLAGS= -I/home/junligu/shared/mpich2-1.2/src/openpa/src -I/home/junligu/shared/mpich2-1.2/src/openpa/src -DUSE_PROCESS_LOCKS' --cache-file=/dev/null --srcdir=.
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for i386-unknown-linux-gnu-strip... no
checking for strip... strip
checking for a thread-safe mkdir -p... mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking for i386-unknown-linux-gnu-gcc... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... yes
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc accepts -g... yes
checking for /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc option to accept ISO C89... none needed
checking for style of include used by make... GNU
checking dependency style of /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc... gcc3
checking for i386-unknown-linux-gnu-ranlib... ranlib
checking how to run the C preprocessor... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking stdio.h usability... yes
checking stdio.h presence... yes
checking for stdio.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking math.h usability... yes
checking math.h presence... yes
checking for math.h... yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking for strdup... yes
checking whether strdup needs a declaration... no
checking for snprintf... yes
checking whether snprintf needs a declaration... no
checking whether __attribute__ allowed... yes
checking whether __attribute__((format)) allowed... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating include/mplconf.h
config.status: include/mplconf.h is unchanged
config.status: executing include/mplconfig.h commands
config.status: creating include/mplconfig.h - prefix MPL for include/mplconf.h defines
config.status: include/mplconfig.h is unchanged
config.status: executing depfiles commands
configure: configuring subsystem in src/pm/gforker
RUNNING CONFIGURE FOR THE GFORKER PM
checking for i386-unknown-linux-gnu-gcc... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... yes
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc accepts -g... yes
checking for /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc option to accept ISO C89... none needed
checking for a BSD-compatible install... /usr/bin/install -c
checking whether install works... yes
checking whether mkdir -p works... yes
checking for make... make
checking whether clock skew breaks make... no
checking whether make supports include... yes
checking whether make allows comments in actions... yes
checking for virtual path format... VPATH
checking whether make sets CFLAGS... yes
checking for an ANSI C-conforming const... yes
checking for volatile... yes
checking for restrict... __restrict
checking for inline... inline
checking whether __attribute__ allowed... yes
checking whether __attribute__((format)) allowed... yes
checking for snprintf... yes
checking whether snprintf needs a declaration... no
checking for strdup... yes
checking whether strdup needs a declaration... no
checking for setsid... yes
checking for isatty... yes
checking for getsid... yes
checking for library containing socketpair... none required
checking how to run the C preprocessor... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for sys/types.h... (cached) yes
checking signal.h usability... yes
checking signal.h presence... yes
checking for signal.h... yes
checking sys/ptrace.h usability... yes
checking sys/ptrace.h presence... yes
checking for sys/ptrace.h... yes
checking for strsignal... yes
checking for sigaction... yes
checking for signal... yes
checking for sigset... yes
checking for struct sigaction... yes
checking for string.h... (cached) yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking for unistd.h... (cached) yes
checking for stdlib.h... (cached) yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking wait.h usability... yes
checking wait.h presence... yes
checking for wait.h... yes
checking errno.h usability... yes
checking errno.h presence... yes
checking for errno.h... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating forkerconf.h
config.status: forkerconf.h is unchanged
=== configuring in ../util (/home/junligu/shared/mpich2-1.2/src/pm/gforker/../util)
configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/junligu/shared/MPICH_alpha2'  '--enable-cxx' '--disable-f77' '--with-device=ch3:nemesis' '--with-atomic-primitives=no' '--target=alpha-unknown-linux-gnu' '--host=i386-unknown-linux-gnu' 'host_alias=i386-unknown-linux-gnu' 'target_alias=alpha-unknown-linux-gnu' 'CC=/opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc' 'CXX=/opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/g++' 'CFLAGS= -O2' 'LDFLAGS=' 'LIBS= -lpthread   -lrt   ' 'CPPFLAGS= -I/home/junligu/shared/mpich2-1.2/src/openpa/src -I/home/junligu/shared/mpich2-1.2/src/openpa/src -DUSE_PROCESS_LOCKS' --cache-file=/dev/null --srcdir=.
RUNNING CONFIGURE FOR THE PM UTILITIES
checking for i386-unknown-linux-gnu-gcc... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... yes
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc accepts -g... yes
checking for /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc option to accept ISO C89... none needed
checking for make... make
checking whether clock skew breaks make... no
checking whether make supports include... yes
checking whether make allows comments in actions... yes
checking for virtual path format... VPATH
checking whether make sets CFLAGS... yes
checking for ar... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/ar
checking for i386-unknown-linux-gnu-ranlib... ranlib
checking for an ANSI C-conforming const... yes
checking for volatile... yes
checking for restrict... __restrict
checking for inline... inline
checking whether __attribute__ allowed... yes
checking whether __attribute__((format)) allowed... yes
checking for strtol... yes
checking for time... yes
checking for gettimeofday... yes
checking whether struct hostent contains h_addr_list... yes
checking how to run the C preprocessor... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for pid_t... yes
checking for setsid... yes
checking for isatty... yes
checking for getsid... yes
checking whether getsid is prototyped in unistd.h... no
checking for unsetenv... yes
checking for cygwin1.dll in /bin... yes
checking for environ in unistd.h... no
checking for extern environ in runtime... yes
checking for library containing socketpair... none required
checking for ANSI C header files... (cached) yes
checking for sys/types.h... (cached) yes
checking signal.h usability... yes
checking signal.h presence... yes
checking for signal.h... yes
checking sys/ptrace.h usability... yes
checking sys/ptrace.h presence... yes
checking for sys/ptrace.h... yes
checking sys/uio.h usability... yes
checking sys/uio.h presence... yes
checking for sys/uio.h... yes
checking for unistd.h... (cached) yes
checking whether struct iovec is defined in sys/uio.h... yes
checking for strsignal... yes
checking whether strsignal needs a declaration... yes
checking for snprintf... yes
checking for strdup... yes
checking for sigaction... yes
checking for signal... yes
checking for sigset... yes
checking for struct sigaction and sa_handler... yes
checking whether snprintf needs a declaration... no
checking whether strdup needs a declaration... no
checking for putenv... yes
checking whether putenv needs a declaration... no
checking for gethostname... yes
checking whether gethostname needs a declaration... no
checking for select... yes
checking sys/select.h usability... yes
checking sys/select.h presence... yes
checking for sys/select.h... yes
checking whether FD_ZERO works... yes
checking for sched_setaffinity... yes
checking for sched_getaffinity... yes
checking for bindprocessor... no
checking for thread_policy_set... no
checking whether cpu_set_t available... yes
checking whether the CPU_SET and CPU_ZERO macros are defined... no
checking for string.h... (cached) yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking time.h usability... yes
checking time.h presence... yes
checking for time.h... yes
checking for stdlib.h... (cached) yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking wait.h usability... yes
checking wait.h presence... yes
checking for wait.h... yes
checking errno.h usability... yes
checking errno.h presence... yes
checking for errno.h... yes
checking whether socklen_t is defined (in sys/socket.h if present)... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating test/Makefile
config.status: creating pmutilconf.h
config.status: pmutilconf.h is unchanged
configure: configuring subsystem in src/mpe2
Configuring MPE Profiling System with  '--prefix=/home/junligu/shared/MPICH_alpha2' '--enable-cxx' '--disable-f77' '--with-device=ch3:nemesis' '--with-atomic-primitives=no' '--target=alpha-unknown-linux-gnu' '--host=i386-unknown-linux-gnu' 'host_alias=i386-unknown-linux-gnu' 'target_alias=alpha-unknown-linux-gnu' 'CC=/opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc' 'CXX=/opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/g++' 'MPI_CC=/home/junligu/shared/mpich2-1.2/bin/mpicc' 'MPI_F77=/home/junligu/shared/mpich2-1.2/bin/mpif77' 'CFLAGS= -O2' 'LDFLAGS=' 'LIBS= -lpthread   -lrt   ' 'CPPFLAGS= -I/home/junligu/shared/mpich2-1.2/src/openpa/src -I/home/junligu/shared/mpich2-1.2/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=gfortran-4.3'
checking for current directory name... /home/junligu/shared/mpich2-1.2/src/mpe2
checking gnumake... yes using --no-print-directory
checking BSD 4.4 make... no - whew
checking OSF V3 make... no
checking for virtual path format... VPATH
This MPE build is part of the MPICH2 build
checking for leftover Makefiles in subpackages ...  "src/misc" "src/callstack" "src/logging" "src/wrappers" "src/graphics" "src/collchk" cleaned 
checking for i386-unknown-linux-gnu-gcc... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... yes
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc accepts -g... yes
checking for /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc option to accept ISO C89... none needed
checking whether MPI_CC has been set ... /home/junligu/shared/mpich2-1.2/bin/mpicc 
checking how to run the C preprocessor... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc -E
checking whether ln -s works... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether install works... yes
checking for i386-unknown-linux-gnu-ranlib... ranlib
checking whether install breaks libraries... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating sbin/mpetestlink
config.status: creating sbin/mpetestexec
config.status: creating sbin/mpetestexeclog
config.status: creating sbin/mpeinstall
config.status: creating sbin/mpecheckinstall
config.status: creating sbin/mpecheckbuild
config.status: creating etc/mpe_help.conf
config.status: creating etc/mpe_f77env.conf
config.status: creating mpe_conf.h
config.status: executing default-1 commands
=== configuring in src/misc (/home/junligu/shared/mpich2-1.2/src/mpe2/src/misc)
configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/junligu/shared/MPICH_alpha2'  '--enable-cxx' '--disable-f77' '--with-device=ch3:nemesis' '--with-atomic-primitives=no' '--target=alpha-unknown-linux-gnu' '--host=i386-unknown-linux-gnu' 'host_alias=i386-unknown-linux-gnu' 'target_alias=alpha-unknown-linux-gnu' 'CC=/opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc' 'CXX=/opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/g++' 'MPI_CC=/home/junligu/shared/mpich2-1.2/bin/mpicc' 'MPI_F77=/home/junligu/shared/mpich2-1.2/bin/mpif77' 'CFLAGS= -O2' 'LDFLAGS=' 'LIBS= -lpthread   -lrt   ' 'CPPFLAGS= -I/home/junligu/shared/mpich2-1.2/src/openpa/src -I/home/junligu/shared/mpich2-1.2/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=gfortran-4.3' --cache-file=/dev/null --srcdir=.
Configuring MPE Miscellaneous Library with  '--disable-option-checking' '--prefix=/home/junligu/shared/MPICH_alpha2' '--enable-cxx' '--disable-f77' '--with-device=ch3:nemesis' '--with-atomic-primitives=no' '--target=alpha-unknown-linux-gnu' '--host=i386-unknown-linux-gnu' 'host_alias=i386-unknown-linux-gnu' 'target_alias=alpha-unknown-linux-gnu' 'CC=/opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc' 'CXX=/opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/g++' 'MPI_CC=/home/junligu/shared/mpich2-1.2/bin/mpicc' 'MPI_F77=/home/junligu/shared/mpich2-1.2/bin/mpif77' 'CFLAGS= -O2' 'LDFLAGS=' 'LIBS= -lpthread   -lrt   ' 'CPPFLAGS= -I/home/junligu/shared/mpich2-1.2/src/openpa/src -I/home/junligu/shared/mpich2-1.2/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=gfortran-4.3' '--cache-file=/dev/null' '--srcdir=.'
checking for current directory name... /home/junligu/shared/mpich2-1.2/src/mpe2/src/misc
checking gnumake... yes using --no-print-directory
checking BSD 4.4 make... no - whew
checking OSF V3 make... no
checking for virtual path format... VPATH
checking build system type... i686-pc-linux-gnu
checking host system type... i386-unknown-linux-gnu
checking for i386-unknown-linux-gnu-gcc... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... yes
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc accepts -g... yes
checking for /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc option to accept ISO C89... none needed
checking for ar... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/ar
checking for i386-unknown-linux-gnu-ranlib... ranlib
checking whether /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc and cc understand -c and -o together... yes
checking how to run the C preprocessor... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc -E
checking for dbx... no
checking for gdb... /usr/bin/gdb
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for an ANSI C-conforming const... yes
checking for sysinfo... yes
checking for uname... yes
checking for gethostbyname... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for unistd.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking netdb.h usability... yes
checking netdb.h presence... yes
checking for netdb.h... yes
checking sys/systeminfo.h usability... no
checking sys/systeminfo.h presence... no
checking for sys/systeminfo.h... no
checking for sys/types.h... (cached) yes
checking for sighandler_t... no
checking for kill... yes
checking whether kill needs a declaration... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/dbxerr.c
config.status: creating mpe_misc_conf.h
=== configuring in src/callstack (/home/junligu/shared/mpich2-1.2/src/mpe2/src/callstack)
configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/junligu/shared/MPICH_alpha2'  '--enable-cxx' '--disable-f77' '--with-device=ch3:nemesis' '--with-atomic-primitives=no' '--target=alpha-unknown-linux-gnu' '--host=i386-unknown-linux-gnu' 'host_alias=i386-unknown-linux-gnu' 'target_alias=alpha-unknown-linux-gnu' 'CC=/opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc' 'CXX=/opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/g++' 'MPI_CC=/home/junligu/shared/mpich2-1.2/bin/mpicc' 'MPI_F77=/home/junligu/shared/mpich2-1.2/bin/mpif77' 'CFLAGS= -O2' 'LDFLAGS=' 'LIBS= -lpthread   -lrt   ' 'CPPFLAGS= -I/home/junligu/shared/mpich2-1.2/src/openpa/src -I/home/junligu/shared/mpich2-1.2/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=gfortran-4.3' --cache-file=/dev/null --srcdir=.
Configuring MPE CallStack Library with  '--disable-option-checking' '--prefix=/home/junligu/shared/MPICH_alpha2' '--enable-cxx' '--disable-f77' '--with-device=ch3:nemesis' '--with-atomic-primitives=no' '--target=alpha-unknown-linux-gnu' '--host=i386-unknown-linux-gnu' 'host_alias=i386-unknown-linux-gnu' 'target_alias=alpha-unknown-linux-gnu' 'CC=/opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc' 'CXX=/opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/g++' 'MPI_CC=/home/junligu/shared/mpich2-1.2/bin/mpicc' 'MPI_F77=/home/junligu/shared/mpich2-1.2/bin/mpif77' 'CFLAGS= -O2' 'LDFLAGS=' 'LIBS= -lpthread   -lrt   ' 'CPPFLAGS= -I/home/junligu/shared/mpich2-1.2/src/openpa/src -I/home/junligu/shared/mpich2-1.2/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=gfortran-4.3' '--cache-file=/dev/null' '--srcdir=.'
checking for current directory name... /home/junligu/shared/mpich2-1.2/src/mpe2/src/callstack
checking gnumake... yes using --no-print-directory
checking BSD 4.4 make... no - whew
checking OSF V3 make... no
checking for virtual path format... VPATH
checking for i386-unknown-linux-gnu-gcc... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... yes
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc accepts -g... yes
checking for /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc option to accept ISO C89... none needed
checking for ar... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/ar
checking for i386-unknown-linux-gnu-ranlib... ranlib
checking whether /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc and cc understand -c and -o together... yes
checking how to run the C preprocessor... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking stdio.h usability... yes
checking stdio.h presence... yes
checking for stdio.h... yes
checking for string.h... (cached) yes
checking for unistd.h... (cached) yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking execinfo.h usability... yes
checking execinfo.h presence... yes
checking for execinfo.h... yes
checking whether <execinfo.h> defines backtrace_symbols_fd() ... yes
checking if <execinfo.h> links with -Wl,--export-dynamic ... yes
checking for fdopen... yes
checking whether fdopen needs a declaration... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating include/mpe_callstack.h
config.status: creating etc/mpe_callstack_ldflags.conf
config.status: creating mpe_callstack_conf.h
=== configuring in src/logging (/home/junligu/shared/mpich2-1.2/src/mpe2/src/logging)
configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/junligu/shared/MPICH_alpha2'  '--enable-cxx' '--disable-f77' '--with-device=ch3:nemesis' '--with-atomic-primitives=no' '--target=alpha-unknown-linux-gnu' '--host=i386-unknown-linux-gnu' 'host_alias=i386-unknown-linux-gnu' 'target_alias=alpha-unknown-linux-gnu' 'CC=/opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc' 'CXX=/opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/g++' 'MPI_CC=/home/junligu/shared/mpich2-1.2/bin/mpicc' 'MPI_F77=/home/junligu/shared/mpich2-1.2/bin/mpif77' 'CFLAGS= -O2' 'LDFLAGS=' 'LIBS= -lpthread   -lrt   ' 'CPPFLAGS= -I/home/junligu/shared/mpich2-1.2/src/openpa/src -I/home/junligu/shared/mpich2-1.2/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=gfortran-4.3' --cache-file=/dev/null --srcdir=.
Configuring MPE Logging Library and Tools with  '--disable-option-checking' '--prefix=/home/junligu/shared/MPICH_alpha2' '--enable-cxx' '--disable-f77' '--with-device=ch3:nemesis' '--with-atomic-primitives=no' '--target=alpha-unknown-linux-gnu' '--host=i386-unknown-linux-gnu' 'host_alias=i386-unknown-linux-gnu' 'target_alias=alpha-unknown-linux-gnu' 'CC=/opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc' 'CXX=/opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/g++' 'MPI_CC=/home/junligu/shared/mpich2-1.2/bin/mpicc' 'MPI_F77=/home/junligu/shared/mpich2-1.2/bin/mpif77' 'CFLAGS= -O2' 'LDFLAGS=' 'LIBS= -lpthread   -lrt   ' 'CPPFLAGS= -I/home/junligu/shared/mpich2-1.2/src/openpa/src -I/home/junligu/shared/mpich2-1.2/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=gfortran-4.3' '--cache-file=/dev/null' '--srcdir=.'
checking for current directory name... /home/junligu/shared/mpich2-1.2/src/mpe2/src/logging
checking gnumake... yes using --no-print-directory
checking BSD 4.4 make... no - whew
checking OSF V3 make... no
checking for virtual path format... VPATH
checking for i386-unknown-linux-gnu-gcc... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... yes
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc accepts -g... yes
checking for /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc option to accept ISO C89... none needed
checking for ar... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/ar
checking for i386-unknown-linux-gnu-ranlib... ranlib
checking whether /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc and cc understand -c and -o together... yes
checking how to run the C preprocessor... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for an ANSI C-conforming const... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking whether byte ordering is bigendian... no
checking stdio.h usability... yes
checking stdio.h presence... yes
checking for stdio.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for unistd.h... (cached) yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking for sys/types.h... (cached) yes
checking sys/bitypes.h usability... yes
checking sys/bitypes.h presence... yes
checking for sys/bitypes.h... yes
checking for sys/stat.h... (cached) yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking for header that defines C99 integer types, intXX_t ... <stdint.h> 
checking for inttypes.h... (cached) yes
checking whether <inttypes.h> defines the PRIdXX macros ... yes
checking if <stdint.h> can be behind system headers ... yes
checking size of void *... 8
checking for address-sized integer ... CLOG_int64_t
checking build system type... i686-pc-linux-gnu
checking host system type... i386-unknown-linux-gnu
checking for gethostname... yes
checking whether gethostname needs a declaration... no
checking for snprintf... yes
checking whether snprintf needs a declaration... no
checking for mkstemp... yes
checking whether mkstemp needs a declaration... no
checking for srand48... yes
checking whether srand48 needs a declaration... no
checking for lrand48... yes
checking whether lrand48 needs a declaration... no
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for O_LARGEFILE for open() ... needs _LARGEFILE64_SOURCE 
checking for O_BINARY for open() ... no
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
checking for pthread_mutex_lock in -lpthread... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating include/clog_inttypes.h
config.status: creating include/mpi_null.h
config.status: creating include/mpe_log_thread.h
config.status: creating etc/mpe_log.conf
config.status: creating etc/mpe_nolog.conf
config.status: creating etc/mpe_log_postlib.conf
config.status: creating mpe_logging_conf.h
=== configuring in src/wrappers (/home/junligu/shared/mpich2-1.2/src/mpe2/src/wrappers)
configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/junligu/shared/MPICH_alpha2'  '--enable-cxx' '--disable-f77' '--with-device=ch3:nemesis' '--with-atomic-primitives=no' '--target=alpha-unknown-linux-gnu' '--host=i386-unknown-linux-gnu' 'host_alias=i386-unknown-linux-gnu' 'target_alias=alpha-unknown-linux-gnu' 'CC=/opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc' 'CXX=/opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/g++' 'MPI_CC=/home/junligu/shared/mpich2-1.2/bin/mpicc' 'MPI_F77=/home/junligu/shared/mpich2-1.2/bin/mpif77' 'CFLAGS= -O2' 'LDFLAGS=' 'LIBS= -lpthread   -lrt   ' 'CPPFLAGS= -I/home/junligu/shared/mpich2-1.2/src/openpa/src -I/home/junligu/shared/mpich2-1.2/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=gfortran-4.3' --cache-file=/dev/null --srcdir=.
Configuring MPE Wrapper Libraries For MPI with  '--disable-option-checking' '--prefix=/home/junligu/shared/MPICH_alpha2' '--enable-cxx' '--disable-f77' '--with-device=ch3:nemesis' '--with-atomic-primitives=no' '--target=alpha-unknown-linux-gnu' '--host=i386-unknown-linux-gnu' 'host_alias=i386-unknown-linux-gnu' 'target_alias=alpha-unknown-linux-gnu' 'CC=/opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc' 'CXX=/opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/g++' 'MPI_CC=/home/junligu/shared/mpich2-1.2/bin/mpicc' 'MPI_F77=/home/junligu/shared/mpich2-1.2/bin/mpif77' 'CFLAGS= -O2' 'LDFLAGS=' 'LIBS= -lpthread   -lrt   ' 'CPPFLAGS= -I/home/junligu/shared/mpich2-1.2/src/openpa/src -I/home/junligu/shared/mpich2-1.2/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=gfortran-4.3' '--cache-file=/dev/null' '--srcdir=.'
checking for current directory name... /home/junligu/shared/mpich2-1.2/src/mpe2/src/wrappers
checking gnumake... yes using --no-print-directory
checking BSD 4.4 make... no - whew
checking OSF V3 make... no
checking for virtual path format... VPATH
checking for i386-unknown-linux-gnu-gcc... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... yes
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc accepts -g... yes
checking for /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc option to accept ISO C89... none needed
checking for ar... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/ar
checking for i386-unknown-linux-gnu-ranlib... ranlib
checking how to run the C preprocessor... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for an ANSI C-conforming const... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking stdio.h usability... yes
checking stdio.h presence... yes
checking for stdio.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking for working alloca.h... yes
checking for alloca... yes
checking for stdarg is correct... yes
checking if compiler accepts prototypes ... yes
checking build system type... i686-pc-linux-gnu
checking host system type... i386-unknown-linux-gnu
checking for safe PMPI invocations ... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating test/Makefile
config.status: creating etc/mpe_f77env.conf
config.status: creating etc/mpe_mpilog.conf
config.status: creating etc/mpe_mpitrace.conf
config.status: creating mpe_wrappers_conf.h
=== configuring in src/graphics (/home/junligu/shared/mpich2-1.2/src/mpe2/src/graphics)
configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/junligu/shared/MPICH_alpha2'  '--enable-cxx' '--disable-f77' '--with-device=ch3:nemesis' '--with-atomic-primitives=no' '--target=alpha-unknown-linux-gnu' '--host=i386-unknown-linux-gnu' 'host_alias=i386-unknown-linux-gnu' 'target_alias=alpha-unknown-linux-gnu' 'CC=/opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc' 'CXX=/opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/g++' 'MPI_CC=/home/junligu/shared/mpich2-1.2/bin/mpicc' 'MPI_F77=/home/junligu/shared/mpich2-1.2/bin/mpif77' 'CFLAGS= -O2' 'LDFLAGS=' 'LIBS= -lpthread   -lrt   ' 'CPPFLAGS= -I/home/junligu/shared/mpich2-1.2/src/openpa/src -I/home/junligu/shared/mpich2-1.2/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=gfortran-4.3' --cache-file=/dev/null --srcdir=.
Configuring MPE X Graphics Library with  '--disable-option-checking' '--prefix=/home/junligu/shared/MPICH_alpha2' '--enable-cxx' '--disable-f77' '--with-device=ch3:nemesis' '--with-atomic-primitives=no' '--target=alpha-unknown-linux-gnu' '--host=i386-unknown-linux-gnu' 'host_alias=i386-unknown-linux-gnu' 'target_alias=alpha-unknown-linux-gnu' 'CC=/opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc' 'CXX=/opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/g++' 'MPI_CC=/home/junligu/shared/mpich2-1.2/bin/mpicc' 'MPI_F77=/home/junligu/shared/mpich2-1.2/bin/mpif77' 'CFLAGS= -O2' 'LDFLAGS=' 'LIBS= -lpthread   -lrt   ' 'CPPFLAGS= -I/home/junligu/shared/mpich2-1.2/src/openpa/src -I/home/junligu/shared/mpich2-1.2/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=gfortran-4.3' '--cache-file=/dev/null' '--srcdir=.'
checking for current directory name... /home/junligu/shared/mpich2-1.2/src/mpe2/src/graphics
checking gnumake... yes using --no-print-directory
checking BSD 4.4 make... no - whew
checking OSF V3 make... no
checking for virtual path format... VPATH
checking for i386-unknown-linux-gnu-gcc... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... yes
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc accepts -g... yes
checking for /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc option to accept ISO C89... none needed
checking for ar... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/ar
checking for i386-unknown-linux-gnu-ranlib... ranlib
checking whether /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc and cc understand -c and -o together... yes
checking how to run the C preprocessor... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc -E
checking for X... libraries /usr/lib, headers /usr/include
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for an ANSI C-conforming const... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking size of void *... 8
checking for long pointer... yes
checking for system... yes
checking for unistd.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating contrib/life/Makefile
config.status: creating contrib/mandel/Makefile
config.status: creating contrib/mastermind/Makefile
config.status: creating contrib/test/Makefile
config.status: creating etc/mpe_mpianim.conf
config.status: creating etc/mpe_graphics.conf
config.status: creating mpe_graphics_conf.h
=== configuring in src/collchk (/home/junligu/shared/mpich2-1.2/src/mpe2/src/collchk)
configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/junligu/shared/MPICH_alpha2'  '--enable-cxx' '--disable-f77' '--with-device=ch3:nemesis' '--with-atomic-primitives=no' '--target=alpha-unknown-linux-gnu' '--host=i386-unknown-linux-gnu' 'host_alias=i386-unknown-linux-gnu' 'target_alias=alpha-unknown-linux-gnu' 'CC=/opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc' 'CXX=/opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/g++' 'MPI_CC=/home/junligu/shared/mpich2-1.2/bin/mpicc' 'MPI_F77=/home/junligu/shared/mpich2-1.2/bin/mpif77' 'CFLAGS= -O2' 'LDFLAGS=' 'LIBS= -lpthread   -lrt   ' 'CPPFLAGS= -I/home/junligu/shared/mpich2-1.2/src/openpa/src -I/home/junligu/shared/mpich2-1.2/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=gfortran-4.3' --cache-file=/dev/null --srcdir=.
Configuring MPE Collective and Datatype Checking Library with  '--disable-option-checking' '--prefix=/home/junligu/shared/MPICH_alpha2' '--enable-cxx' '--disable-f77' '--with-device=ch3:nemesis' '--with-atomic-primitives=no' '--target=alpha-unknown-linux-gnu' '--host=i386-unknown-linux-gnu' 'host_alias=i386-unknown-linux-gnu' 'target_alias=alpha-unknown-linux-gnu' 'CC=/opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc' 'CXX=/opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/g++' 'MPI_CC=/home/junligu/shared/mpich2-1.2/bin/mpicc' 'MPI_F77=/home/junligu/shared/mpich2-1.2/bin/mpif77' 'CFLAGS= -O2' 'LDFLAGS=' 'LIBS= -lpthread   -lrt   ' 'CPPFLAGS= -I/home/junligu/shared/mpich2-1.2/src/openpa/src -I/home/junligu/shared/mpich2-1.2/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=gfortran-4.3' '--cache-file=/dev/null' '--srcdir=.'
checking for current directory name... /home/junligu/shared/mpich2-1.2/src/mpe2/src/collchk
checking gnumake... yes using --no-print-directory
checking BSD 4.4 make... no - whew
checking OSF V3 make... no
checking for virtual path format... VPATH
checking build system type... i686-pc-linux-gnu
checking host system type... i386-unknown-linux-gnu
checking for i386-unknown-linux-gnu-gcc... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... yes
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc accepts -g... yes
checking for /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc option to accept ISO C89... none needed
checking for ar... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/ar
checking for i386-unknown-linux-gnu-ranlib... ranlib
checking how to run the C preprocessor... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for an ANSI C-conforming const... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking stdio.h usability... yes
checking stdio.h presence... yes
checking for stdio.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for unistd.h... (cached) yes
checking for working alloca.h... yes
checking for alloca... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating test/Makefile
config.status: creating etc/mpe_mpicheck.conf
config.status: creating mpe_collchk_conf.h
=== configuring in src/slog2sdk (/home/junligu/shared/mpich2-1.2/src/mpe2/src/slog2sdk)
configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/junligu/shared/MPICH_alpha2'  '--enable-cxx' '--disable-f77' '--with-device=ch3:nemesis' '--with-atomic-primitives=no' '--target=alpha-unknown-linux-gnu' '--host=i386-unknown-linux-gnu' 'host_alias=i386-unknown-linux-gnu' 'target_alias=alpha-unknown-linux-gnu' 'CC=/opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc' 'CXX=/opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/g++' 'MPI_CC=/home/junligu/shared/mpich2-1.2/bin/mpicc' 'MPI_F77=/home/junligu/shared/mpich2-1.2/bin/mpif77' 'CFLAGS= -O2' 'LDFLAGS=' 'LIBS= -lpthread   -lrt   ' 'CPPFLAGS= -I/home/junligu/shared/mpich2-1.2/src/openpa/src -I/home/junligu/shared/mpich2-1.2/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=gfortran-4.3' --cache-file=/dev/null --srcdir=.
checking for current directory name... /home/junligu/shared/mpich2-1.2/src/mpe2/src/slog2sdk
Configuring SLOG2SDK with  '--disable-option-checking' '--prefix=/home/junligu/shared/MPICH_alpha2' '--enable-cxx' '--disable-f77' '--with-device=ch3:nemesis' '--with-atomic-primitives=no' '--target=alpha-unknown-linux-gnu' '--host=i386-unknown-linux-gnu' 'host_alias=i386-unknown-linux-gnu' 'target_alias=alpha-unknown-linux-gnu' 'CC=/opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc' 'CXX=/opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/g++' 'MPI_CC=/home/junligu/shared/mpich2-1.2/bin/mpicc' 'MPI_F77=/home/junligu/shared/mpich2-1.2/bin/mpif77' 'CFLAGS= -O2' 'LDFLAGS=' 'LIBS= -lpthread   -lrt   ' 'CPPFLAGS= -I/home/junligu/shared/mpich2-1.2/src/openpa/src -I/home/junligu/shared/mpich2-1.2/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=gfortran-4.3' '--cache-file=/dev/null' '--srcdir=.'
checking gnumake... yes using --no-print-directory
checking BSD 4.4 make... no - whew
checking OSF V3 make... no
checking for virtual path format... VPATH
checking for a BSD-compatible install... /usr/bin/install -c
checking whether install works... yes
checking if CLASSPATH is set... no, good to go
checking build system type... i686-pc-linux-gnu
checking host system type... i386-unknown-linux-gnu
checking for java in user's PATH... not found
checking for java in user's PATH... not found
MPE2:  "src/misc" "src/callstack" "src/logging" "src/wrappers" "src/graphics" "src/collchk" have been configured
checking the sizeof MPI_Offset... unknown
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