[mpich-discuss] errors while running the test suite of mpich2

Wed Oct 22 15:48:09 CDT 2008

Nonblocking I/O calls will use blocking I/O internally.

Rajeev 

> -----Original Message-----
> From: owner-mpich-discuss at mcs.anl.gov 
> [mailto:owner-mpich-discuss at mcs.anl.gov] On Behalf Of 
> Kamaraju Kusumanchi
> Sent: Wednesday, October 22, 2008 3:33 PM
> To: mpich-discuss at mcs.anl.gov
> Subject: Re: [mpich-discuss] errors while running the test 
> suite of mpich2
> 
> What kind of functionality will I be loosing by disabling this option?
> 
> raju
> 
> On Wed, Oct 22, 2008 at 3:35 PM, Rajeev Thakur 
> <thakur at mcs.anl.gov> wrote:
> > If you configure with --disable-aio, many of the I/O ones 
> will go away. Some
> > of the others may be timing out because you are writing to 
> NFS, which is
> > slow.
> >
> > Rajeev
> >
> >> -----Original Message-----
> >> From: owner-mpich-discuss at mcs.anl.gov
> >> [mailto:owner-mpich-discuss at mcs.anl.gov] On Behalf Of
> >> Kamaraju Kusumanchi
> >> Sent: Wednesday, October 22, 2008 11:39 AM
> >> To: mpich-discuss at mcs.anl.gov
> >> Subject: [mpich-discuss] errors while running the test 
> suite of mpich2
> >>
> >> The cluster configuration is something like
> >>
> >>
> >>                master
> >>                  |
> >>           ETHERNET SWITCH
> >>            /   /   \   \
> >>         /    /       \    \
> >>      /     /           \     \
> >>   /      /               \      \
> >> node1  node2 .......... node16 node17
> >>   \     \                /      /
> >>      \    \            /     /
> >>         \   \        /    /
> >>            \  \    /   /
> >>         INFINIBAND SWITCH
> >>
> >>
> >> All the compilations have to be performed on the master 
> node. All the
> >> executions have to be performed on the slave nodes only.
> >>
> >> I configured mpich2 1.0.7 (on the master node) using 
> gfortran 4.3.2,
> >> gcc 4.3.2 with the following command
> >>
> >> ~/software/unZipped/mpich2-1.0.7/configure --enable-f77 
> --enable-f90
> >> --prefix=/home6/raju/software/compiledLibs/mpich2_1.0.7_gcc_4.
> > 3.2_gfortran_4.3.2
> >> 2>&1 | tee configure.log
> >>
> >> then I compiled the source code (on the master node) using 
> the command
> >>
> >> nohup make > make.log 2>&1 &
> >>
> >> Then I installed the software using
> >>
> >> nohup make install > install.log 2>&1 &
> >>
> >> Next I logged into the slave node and performed installcheck using
> >>
> >> mpd&
> >> make installcheck 2>&1 | tee installcheck.log
> >>
> >> After that, I ran the testsuite (on the slave node) using
> >>
> >> make testing 2>&1 | tee make_testing.log
> >>
> >> At this stage, I am getting errors such as
> >>
> >> Looking in ./f77/pt2pt/testlist
> >> Processing directory info
> >> Looking in ./f77/info/testlist
> >> Processing directory spawn
> >> Looking in ./f77/spawn/testlist
> >> Processing directory io
> >> Looking in ./f77/io/testlist
> >> Unexpected output in iwriteatf: mpiexec_node1.ank.mae.cornell.edu
> >> (handle_sig_occurred 1122): job ending due to env var
> >> MPIEXEC_TIMEOUT=180
> >> Program iwriteatf exited without No Errors
> >> Unexpected output in iwritef: mpiexec_node1.ank.mae.cornell.edu
> >> (handle_sig_occurred 1122): job ending due to env var
> >> MPIEXEC_TIMEOUT=180
> >> Program iwritef exited without No Errors
> >> Unexpected output in iwriteshf: mpiexec_node1.ank.mae.cornell.edu
> >> (handle_sig_occurred 1122): job ending due to env var
> >> MPIEXEC_TIMEOUT=180
> >> Program iwriteshf exited without No Errors
> >> Unexpected output in writef: mpiexec_node1.ank.mae.cornell.edu
> >> (handle_sig_occurred 1122): job ending due to env var
> >> MPIEXEC_TIMEOUT=180
> >> Program writef exited without No Errors
> >> Unexpected output in writeatf: mpiexec_node1.ank.mae.cornell.edu
> >> (handle_sig_occurred 1122): job ending due to env var
> >> MPIEXEC_TIMEOUT=180
> >> Program writeatf exited without No Errors
> >> Unexpected output in writeallf: mpiexec_node1.ank.mae.cornell.edu
> >> (handle_sig_occurred 1122): job ending due to env var
> >> MPIEXEC_TIMEOUT=180
> >> Program writeallf exited without No Errors
> >> Unexpected output in writeshf: mpiexec_node1.ank.mae.cornell.edu
> >> (handle_sig_occurred 1122): job ending due to env var
> >> MPIEXEC_TIMEOUT=180
> >> Program writeshf exited without No Errors
> >> Unexpected output in writeordf: mpiexec_node1.ank.mae.cornell.edu
> >> (handle_sig_occurred 1122): job ending due to env var
> >> MPIEXEC_TIMEOUT=180
> >> Program writeordf exited without No Errors
> >> Unexpected output in writeatallf: mpiexec_node1.ank.mae.cornell.edu
> >> (handle_sig_occurred 1122): job ending due to env var
> >> MPIEXEC_TIMEOUT=180
> >> Program writeatallf exited without No Errors
> >> Unexpected output in writeatallbef: 
> mpiexec_node1.ank.mae.cornell.edu
> >> (handle_sig_occurred 1122): job ending due to env var
> >> MPIEXEC_TIMEOUT=180
> >> Program writeatallbef exited without No Errors
> >> Unexpected output in writeallbef: mpiexec_node1.ank.mae.cornell.edu
> >> (handle_sig_occurred 1122): job ending due to env var
> >> MPIEXEC_TIMEOUT=180
> >> Program writeallbef exited without No Errors
> >> Unexpected output in writeordbef: mpiexec_node1.ank.mae.cornell.edu
> >> (handle_sig_occurred 1122): job ending due to env var
> >> MPIEXEC_TIMEOUT=180
> >> Program writeordbef exited without No Errors
> >> Processing directory rma
> >> Looking in ./f77/rma/testlist
> >> Processing directory init
> >> Looking in ./f77/init/testlist
> >>
> >>
> >> .....
> >>
> >>
> >> Processing directory attr
> >> Looking in ./cxx/attr/testlist
> >> Processing directory pt2pt
> >> Looking in ./cxx/pt2pt/testlist
> >> Failed to build bsend1cxx; make[3]: Entering directory
> >> `/home6/raju/software/compileHere/mpich2-1.0.7/test/mpi/cxx/pt2pt'
> >> /home6/raju/software/compiledLibs/mpich2_1.0.7_gcc_4.3.2_gfort
> > ran_4.3.2/bin/mpicxx
> >> -DHAVE_CONFIG_H -I.
> >> -I/home6/raju/software/unZipped/mpich2-1.0.7/test/mpi/cxx/pt2pt
> >> -I../../include
> >> -I/home6/raju/software/unZipped/mpich2-1.0.7/test/mpi/cxx/pt2p
> >> t/../../include
> >>   -c
> >> /home6/raju/software/unZipped/mpich2-1.0.7/test/mpi/cxx/pt2pt/
> >> bsend1cxx.cxx
> >> /home6/raju/software/unZipped/mpich2-1.0.7/test/mpi/cxx/pt2pt/
> >> bsend1cxx.cxx:
> >> In function 'int main(int, char**)':
> >> /home6/raju/software/unZipped/mpich2-1.0.7/test/mpi/cxx/pt2pt/
> >> bsend1cxx.cxx:81:
> >> error: 'strcmp' was not declared in this scope
> >> /home6/raju/software/unZipped/mpich2-1.0.7/test/mpi/cxx/pt2pt/
> >> bsend1cxx.cxx:91:
> >> error: 'strcmp' was not declared in this scope
> >> make[3]: *** [bsend1cxx.o] Error 1
> >> make[3]: Leaving directory
> >> `/home6/raju/software/compileHere/mpich2-1.0.7/test/mpi/cxx/pt2pt'
> >>
> >>
> >>
> >>
> >> I am attaching all the log files for your reference. I have tried
> >> mpich2 1.0.8rc1. I am getting similar errors when running the test
> >> suite. Could someone please tell me how to fix these problems?
> >>
> >> thanks
> >> raju
> >>
> >
> >
> 
> 