[mpich-discuss] errors while running the test suite of mpich2
Kamaraju Kusumanchi
kamaraju at gmail.com
Wed Oct 22 11:39:03 CDT 2008
The cluster configuration is something like
master
|
ETHERNET SWITCH
/ / \ \
/ / \ \
/ / \ \
/ / \ \
node1 node2 .......... node16 node17
\ \ / /
\ \ / /
\ \ / /
\ \ / /
INFINIBAND SWITCH
All the compilations have to be performed on the master node. All the
executions have to be performed on the slave nodes only.
I configured mpich2 1.0.7 (on the master node) using gfortran 4.3.2,
gcc 4.3.2 with the following command
~/software/unZipped/mpich2-1.0.7/configure --enable-f77 --enable-f90
--prefix=/home6/raju/software/compiledLibs/mpich2_1.0.7_gcc_4.3.2_gfortran_4.3.2
2>&1 | tee configure.log
then I compiled the source code (on the master node) using the command
nohup make > make.log 2>&1 &
Then I installed the software using
nohup make install > install.log 2>&1 &
Next I logged into the slave node and performed installcheck using
mpd&
make installcheck 2>&1 | tee installcheck.log
After that, I ran the testsuite (on the slave node) using
make testing 2>&1 | tee make_testing.log
At this stage, I am getting errors such as
Looking in ./f77/pt2pt/testlist
Processing directory info
Looking in ./f77/info/testlist
Processing directory spawn
Looking in ./f77/spawn/testlist
Processing directory io
Looking in ./f77/io/testlist
Unexpected output in iwriteatf: mpiexec_node1.ank.mae.cornell.edu
(handle_sig_occurred 1122): job ending due to env var
MPIEXEC_TIMEOUT=180
Program iwriteatf exited without No Errors
Unexpected output in iwritef: mpiexec_node1.ank.mae.cornell.edu
(handle_sig_occurred 1122): job ending due to env var
MPIEXEC_TIMEOUT=180
Program iwritef exited without No Errors
Unexpected output in iwriteshf: mpiexec_node1.ank.mae.cornell.edu
(handle_sig_occurred 1122): job ending due to env var
MPIEXEC_TIMEOUT=180
Program iwriteshf exited without No Errors
Unexpected output in writef: mpiexec_node1.ank.mae.cornell.edu
(handle_sig_occurred 1122): job ending due to env var
MPIEXEC_TIMEOUT=180
Program writef exited without No Errors
Unexpected output in writeatf: mpiexec_node1.ank.mae.cornell.edu
(handle_sig_occurred 1122): job ending due to env var
MPIEXEC_TIMEOUT=180
Program writeatf exited without No Errors
Unexpected output in writeallf: mpiexec_node1.ank.mae.cornell.edu
(handle_sig_occurred 1122): job ending due to env var
MPIEXEC_TIMEOUT=180
Program writeallf exited without No Errors
Unexpected output in writeshf: mpiexec_node1.ank.mae.cornell.edu
(handle_sig_occurred 1122): job ending due to env var
MPIEXEC_TIMEOUT=180
Program writeshf exited without No Errors
Unexpected output in writeordf: mpiexec_node1.ank.mae.cornell.edu
(handle_sig_occurred 1122): job ending due to env var
MPIEXEC_TIMEOUT=180
Program writeordf exited without No Errors
Unexpected output in writeatallf: mpiexec_node1.ank.mae.cornell.edu
(handle_sig_occurred 1122): job ending due to env var
MPIEXEC_TIMEOUT=180
Program writeatallf exited without No Errors
Unexpected output in writeatallbef: mpiexec_node1.ank.mae.cornell.edu
(handle_sig_occurred 1122): job ending due to env var
MPIEXEC_TIMEOUT=180
Program writeatallbef exited without No Errors
Unexpected output in writeallbef: mpiexec_node1.ank.mae.cornell.edu
(handle_sig_occurred 1122): job ending due to env var
MPIEXEC_TIMEOUT=180
Program writeallbef exited without No Errors
Unexpected output in writeordbef: mpiexec_node1.ank.mae.cornell.edu
(handle_sig_occurred 1122): job ending due to env var
MPIEXEC_TIMEOUT=180
Program writeordbef exited without No Errors
Processing directory rma
Looking in ./f77/rma/testlist
Processing directory init
Looking in ./f77/init/testlist
.....
Processing directory attr
Looking in ./cxx/attr/testlist
Processing directory pt2pt
Looking in ./cxx/pt2pt/testlist
Failed to build bsend1cxx; make[3]: Entering directory
`/home6/raju/software/compileHere/mpich2-1.0.7/test/mpi/cxx/pt2pt'
/home6/raju/software/compiledLibs/mpich2_1.0.7_gcc_4.3.2_gfortran_4.3.2/bin/mpicxx
-DHAVE_CONFIG_H -I.
-I/home6/raju/software/unZipped/mpich2-1.0.7/test/mpi/cxx/pt2pt
-I../../include
-I/home6/raju/software/unZipped/mpich2-1.0.7/test/mpi/cxx/pt2pt/../../include
-c /home6/raju/software/unZipped/mpich2-1.0.7/test/mpi/cxx/pt2pt/bsend1cxx.cxx
/home6/raju/software/unZipped/mpich2-1.0.7/test/mpi/cxx/pt2pt/bsend1cxx.cxx:
In function 'int main(int, char**)':
/home6/raju/software/unZipped/mpich2-1.0.7/test/mpi/cxx/pt2pt/bsend1cxx.cxx:81:
error: 'strcmp' was not declared in this scope
/home6/raju/software/unZipped/mpich2-1.0.7/test/mpi/cxx/pt2pt/bsend1cxx.cxx:91:
error: 'strcmp' was not declared in this scope
make[3]: *** [bsend1cxx.o] Error 1
make[3]: Leaving directory
`/home6/raju/software/compileHere/mpich2-1.0.7/test/mpi/cxx/pt2pt'
I am attaching all the log files for your reference. I have tried
mpich2 1.0.8rc1. I am getting similar errors when running the test
suite. Could someone please tell me how to fix these problems?
thanks
raju
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