[mpich-discuss] mpif77 with ifort?
Christopher Tanner
christopher.tanner at gatech.edu
Tue Oct 7 13:41:41 CDT 2008
I compiled MPICH2 (1.0.7) using the Intel compilers and everything
seemed to go fine. However, when I performed the 'mpecheckinstall'
script in the <mpich2_dir>/sbin/ directory, I received the following
errors with F77:
*** Link F77 program with the MPI and manual logging
libraries ........... \c
No.
The failed command is :
/usr/local/mpi/mpich2-1.0.7/bin/mpif77 -I/usr/local/mpi/mpich2-1.0.7/
include -O2 -c fpilog.f
/usr/local/mpi/mpich2-1.0.7/bin/mpif77 -mpe=mpilog -O2 -o fpilog
fpilog.o -lm
/usr/local/mpi/mpich2-1.0.7/lib/libmpe.a(clog_commset.po): In function
`CLOG_CommSet_read':
clog_commset.c:(.text+0x228): undefined reference to
`_intel_fast_memset'
/usr/local/mpi/mpich2-1.0.7/lib/libmpe.a(clog_commset.po): In function
`CLOG_CommSet_append_GIDs':
clog_commset.c:(.text+0x73f): undefined reference to
`_intel_fast_memset'
/usr/local/mpi/mpich2-1.0.7/lib/libmpe.a(clog_commset.po): In function
`CLOG_CommSet_add_GID':
clog_commset.c:(.text+0x8c4): undefined reference to
`_intel_fast_memset'
/usr/local/mpi/mpich2-1.0.7/lib/libmpe.a(clog_commset.po): In function
`CLOG_CommSet_merge':
clog_commset.c:(.text+0xb14): undefined reference to
`_intel_fast_memset'
clog_commset.c:(.text+0xc46): undefined reference to
`_intel_fast_memcpy'
/usr/local/mpi/mpich2-1.0.7/lib/libmpe.a(clog_commset.po): In function
`CLOG_CommSet_add_intracomm':
clog_commset.c:(.text+0xfdd): undefined reference to
`_intel_fast_memset'
/usr/local/mpi/mpich2-1.0.7/lib/libmpe.a(clog_commset.po): In function
`CLOG_CommSet_add_intercomm':
clog_commset.c:(.text+0x118c): undefined reference to
`_intel_fast_memset'
clog_commset.c:(.text+0x1231): undefined reference to
`_intel_fast_memset'
/usr/local/mpi/mpich2-1.0.7/lib/libmpe.a(clog_commset.po): In function
`CLOG_CommSet_create':
clog_commset.c:(.text+0x152a): undefined reference to
`_intel_fast_memset'
/usr/local/mpi/mpich2-1.0.7/lib/libmpe.a(clog_commset.po): In function
`CLOG_CommSet_init':
clog_commset.c:(.text+0x1624): undefined reference to
`_intel_fast_memset'
/usr/local/mpi/mpich2-1.0.7/lib/
libmpe.a(clog_commset.po):clog_commset.c:(.text+0x1725): more
undefined references to `_intel_fast_memset' follow
/usr/local/mpi/mpich2-1.0.7/lib/libmpe.a(mpe_log.po): In function
`MPE_Log_pack':
mpe_log.c:(.text+0xdb6): undefined reference to `_intel_fast_memcpy'
mpe_log.c:(.text+0xdec): undefined reference to `_intel_fast_memcpy'
mpe_log.c:(.text+0xe33): undefined reference to `_intel_fast_memcpy'
mpe_log.c:(.text+0xe76): undefined reference to `_intel_fast_memcpy'
/usr/local/mpi/mpich2-1.0.7/lib/libmpe.a(iterator.po): In function
`MPE_CallStack_iteratorInit':
iterator.c:(.text+0xd4): undefined reference to `_intel_fast_memset'
/usr/local/mpi/mpich2-1.0.7/lib/libmpe.a(clog_uuid.po): In function
`CLOG_Uuid_compare':
clog_uuid.c:(.text+0x55): undefined reference to `_intel_fast_memcmp'
/usr/local/mpi/mpich2-1.0.7/lib/libmpe.a(clog_uuid.po): In function
`CLOG_Uuid_is_equal':
clog_uuid.c:(.text+0x63): undefined reference to `_intel_fast_memcmp'
/usr/local/mpi/mpich2-1.0.7/lib/libmpe.a(clog_uuid.po): In function
`CLOG_Uuid_generate':
clog_uuid.c:(.text+0x170): undefined reference to `_intel_fast_memcpy'
clog_uuid.c:(.text+0x194): undefined reference to `_intel_fast_memcpy'
/usr/local/mpi/mpich2-1.0.7/lib/libmpe.a(clog_merger.po): In function
`CLOG_Merger_next_localblock_hdr':
clog_merger.c:(.text+0x1e4): undefined reference to `_intel_fast_memcpy'
/usr/local/mpi/mpich2-1.0.7/lib/libmpe.a(clog_merger.po): In function
`CLOG_Merger_save_rec':
clog_merger.c:(.text+0x41d): undefined reference to `_intel_fast_memcpy'
/usr/local/mpi/mpich2-1.0.7/lib/libmpe.a(clog_merger.po): In function
`CLOG_Merger_next_sideblock_hdr':
clog_merger.c:(.text+0x557): undefined reference to `_intel_fast_memcpy'
/usr/local/mpi/mpich2-1.0.7/lib/libmpe.a(clog_merger.po):clog_merger.c:
(.text+0x920): more undefined references to `_intel_fast_memcpy' follow
/usr/local/mpi/mpich2-1.0.7/lib/libmpich.a(group_range_excl.o): In
function `MPI_Group_range_excl':
group_range_excl.c:(.text+0x210): undefined reference to `__svml_idiv4'
/usr/local/mpi/mpich2-1.0.7/lib/libmpich.a(group_range_incl.o): In
function `MPI_Group_range_incl':
group_range_incl.c:(.text+0x203): undefined reference to `__svml_idiv4'
/usr/local/mpi/mpich2-1.0.7/lib/libmpich.a(ad_open.o): In function
`ADIO_Open':
ad_open.c:(.text+0x611): undefined reference to `_intel_fast_memcpy'
/usr/local/mpi/mpich2-1.0.7/lib/libmpich.a(ad_read_coll.o): In
function `ADIOI_GEN_ReadStridedColl':
ad_read_coll.c:(.text+0x18fa): undefined reference to
`_intel_fast_memcpy'
ad_read_coll.c:(.text+0x194c): undefined reference to
`_intel_fast_memcpy'
/usr/local/mpi/mpich2-1.0.7/lib/libmpich.a(ad_read_coll.o): In
function `ADIOI_R_Exchange_data':
ad_read_coll.c:(.text+0x2c35): undefined reference to
`_intel_fast_memcpy'
ad_read_coll.c:(.text+0x2dff): undefined reference to
`_intel_fast_memcpy'
/usr/local/mpi/mpich2-1.0.7/lib/
libmpich.a(ad_write_coll.o):ad_write_coll.c:(.text+0x2a56): more
undefined references to `_intel_fast_memcpy' follow
/usr/local/mpi/mpich2-1.0.7/lib/libmpich.a(cb_config_list.o): In
function `ADIOI_cb_config_list_parse':
cb_config_list.c:(.text+0x122): undefined reference to
`_intel_fast_memset'
/usr/local/mpi/mpich2-1.0.7/lib/libmpich.a(ch3u_handle_recv_pkt.o): In
function `MPIDI_CH3_PktHandler_LockAccumUnlock':
ch3u_handle_recv_pkt.c:(.text+0x736): undefined reference to
`_intel_fast_memcpy'
/usr/local/mpi/mpich2-1.0.7/lib/libmpich.a(ch3u_handle_recv_pkt.o): In
function `MPIDI_CH3U_Receive_data_found':
ch3u_handle_recv_pkt.c:(.text+0x100f): undefined reference to
`_intel_fast_memcpy'
/usr/local/mpi/mpich2-1.0.7/lib/libmpich.a(ch3u_handle_recv_pkt.o): In
function `MPIDI_CH3_PktHandler_GetResp':
ch3u_handle_recv_pkt.c:(.text+0x1774): undefined reference to
`_intel_fast_memcpy'
/usr/local/mpi/mpich2-1.0.7/lib/libmpich.a(ch3u_handle_recv_pkt.o): In
function `MPIDI_CH3_PktHandler_Get':
ch3u_handle_recv_pkt.c:(.text+0x1cdb): undefined reference to
`_intel_fast_memcpy'
/usr/local/mpi/mpich2-1.0.7/lib/libmpich.a(ch3u_handle_recv_pkt.o): In
function `MPIDI_CH3_PktHandler_Accumulate':
ch3u_handle_recv_pkt.c:(.text+0x21d1): undefined reference to
`_intel_fast_memcpy'
/usr/local/mpi/mpich2-1.0.7/lib/
libmpich.a(ch3u_handle_recv_pkt.o):ch3u_handle_recv_pkt.c:(.text
+0x2380): more undefined references to `_intel_fast_memcpy' follow
/usr/local/mpi/mpich2-1.0.7/lib/libmpich.a(ad_write_str.o): In
function `ADIOI_GEN_WriteStrided':
ad_write_str.c:(.text+0x703): undefined reference to
`_intel_fast_memset'
ad_write_str.c:(.text+0x8b3): undefined reference to
`_intel_fast_memcpy'
ad_write_str.c:(.text+0xa55): undefined reference to
`_intel_fast_memcpy'
ad_write_str.c:(.text+0xd4a): undefined reference to
`_intel_fast_memcpy'
ad_write_str.c:(.text+0xed2): undefined reference to
`_intel_fast_memcpy'
/usr/local/mpi/mpich2-1.0.7/lib/libmpich.a(ad_nfs_read.o): In function
`ADIOI_NFS_ReadStrided':
ad_nfs_read.c:(.text+0x4e5): undefined reference to `_intel_fast_memcpy'
/usr/local/mpi/mpich2-1.0.7/lib/
libmpich.a(ad_nfs_read.o):ad_nfs_read.c:(.text+0x532): more undefined
references to `_intel_fast_memcpy' follow
/usr/local/mpi/mpich2-1.0.7/lib/libmpich.a(ad_prealloc.o): In function
`ADIOI_GEN_Prealloc':
ad_prealloc.c:(.text+0x17c): undefined reference to `_intel_fast_memset'
collect2: ld returned 1 exit status
make[1]: *** [fpilog] Error 1
Running installation linktest for Fortran collchk program...
*** Link F77 program with the MPI collective/datatype checking
library ... \c
No.
The failed command is :
/usr/local/mpi/mpich2-1.0.7/bin/mpif77 -I/usr/local/mpi/mpich2-1.0.7/
include -O2 -c wrong_reals.f
/usr/local/mpi/mpich2-1.0.7/bin/mpif77 -mpe=mpicheck -O2 -o
wrong_reals wrong_reals.o
/usr/local/mpi/mpich2-1.0.7/lib/libmpe.a(iterator.po): In function
`MPE_CallStack_iteratorInit':
iterator.c:(.text+0xd4): undefined reference to `_intel_fast_memset'
/usr/local/mpi/mpich2-1.0.7/lib/libmpich.a(helper_fns.o): In function
`MPIR_Localcopy':
helper_fns.c:(.text+0x6b3): undefined reference to `_intel_fast_memcpy'
/usr/local/mpi/mpich2-1.0.7/lib/libmpich.a(errutil.o): In function
`MPIR_Err_create_code_valist':
errutil.c:(.text+0x1ca3): undefined reference to `_intel_fast_memcpy'
/usr/local/mpi/mpich2-1.0.7/lib/libmpich.a(ch3u_handle_recv_pkt.o): In
function `MPIDI_CH3_PktHandler_LockAccumUnlock':
ch3u_handle_recv_pkt.c:(.text+0x736): undefined reference to
`_intel_fast_memcpy'
/usr/local/mpi/mpich2-1.0.7/lib/libmpich.a(ch3u_handle_recv_pkt.o): In
function `MPIDI_CH3U_Receive_data_found':
ch3u_handle_recv_pkt.c:(.text+0x100f): undefined reference to
`_intel_fast_memcpy'
/usr/local/mpi/mpich2-1.0.7/lib/libmpich.a(ch3u_handle_recv_pkt.o): In
function `MPIDI_CH3_PktHandler_GetResp':
ch3u_handle_recv_pkt.c:(.text+0x1774): undefined reference to
`_intel_fast_memcpy'
/usr/local/mpi/mpich2-1.0.7/lib/
libmpich.a(ch3u_handle_recv_pkt.o):ch3u_handle_recv_pkt.c:(.text
+0x1cdb): more undefined references to `_intel_fast_memcpy' follow
collect2: ld returned 1 exit status
make[1]: *** [wrong_reals] Error 1
Everything with C was fine. Is there an issue I have with ifort and
mpich2? Thanks!
-------------------------------------------
Chris Tanner
Space Systems Design Lab
Georgia Institute of Technology
christopher.tanner at gatech.edu
-------------------------------------------
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