[mpich-discuss] error while loading shared libraries: libsvml.so

Tue Jun 24 09:39:52 CDT 2008

2008/6/23 REQUENA Stephane <Stephane.REQUENA at ifp.fr>:
> Hi Angel
>
> The svml dynamic lib belongs to the intel compilers distribution, your line
> on the configure seems strange, i think you have
> to define the needed variables prior to compile :
> LDFLAGS="-L/usr/local/lib -L/opt/intel/fce/9.1.036/lib
> -L/opt/intel/cce/9.1.042/lib -lsvml -lpthread -lcrypto"
> FFLAGS="-axW -O3 -fPIC -tpp7 -xT -fpe0 -I/opt/intel/fce/9.1.036/include
> -I/opt/intel/cce/9.1.042/include -c"
>
> and then to compile
>
> Hope it helps, best regards
>
> Stéphane

Thanks Stéphane,

I also proved it but no change.

Angel

> -----Original Message-----
> From: owner-mpich-discuss at mcs.anl.gov on behalf of Angel Arancibia
> Sent: Mon 23/06/2008 20:16
> To: mpich-discuss at mcs.anl.gov
> Subject: [mpich-discuss] error while loading shared libraries: libsvml.so
>
> Hi I compiled mpich2.1.0.7 with smpd (and intel compiler) but I can't
> make it work.
>
> The message is:
>
> " /opt/mpi/mpich2-1.0.7/64/bin/smpd: error while loading shared
> libraries: libsvml.so: cannot open shared object file: No such file or
> directory "
>
> It seems like a library path problem, but I can't find where. In the
> configure, I passed the correct path
>
> ./configure --prefix=/opt/mpi/mpich2-1.0.7/64/ --with-pm=smpd
> --with-pmi=smpd --enable-f90 'LDFLAGS=-L/usr/local/lib
> -L/opt/intel/fce/9.1.036/lib -L/opt/intel/cce/9.1.042/lib -lsvml
> -lpthread -lcrypto' 'FFLAGS=-axW -O3 -fPIC -tpp7 -xT -fpe0
> -I/opt/intel/fce/9.1.036/include -I/opt/intel/cce/9.1.042/include -c'
> 2>&1 | tee config.txt
>
> Then:
>
> make 2>&1 | tee m.txt
> make install 2>&1 | tee mi.txt
>
> The complete message is :
>
> (SGE script out)
>
> aarancibia at cluster:~/job_examples/test-oport/test-AMD/64/mpihello$cat
> mpich2_smpd.sh.po8918
> Cargando Environment
> ##################
> MANPATH=/opt/mpi/mpich2-1.0.7/64/man:/opt/intel/cmkl/9.0/man:/opt/intel/fce/9.1.036/man:/opt/intel/cce/9.1.042/man:/home/sys/sge/man:/usr/share/man
> HOSTNAME=era-q8.cluster.ifir.edu.ar
> INTEL_LICENSE_FILE=/opt/intel/cce/9.1.042/licenses:/opt/intel/licenses:/home/aarancibia/intel/licenses:/opt/intel/fce/9.1.036/licenses:/opt/intel/licenses:/home/aarancibia/intel/licenses
> SGE_TASK_STEPSIZE=undefined
> SHELL=/bin/sh
> TERM=linux
> NHOSTS=1
> SGE_O_WORKDIR=/home/aarancibia/job_examples/test-oport/test-AMD/64/mpihello
> TMPDIR=/local/8918.1.amd-test
> QUIET=no
> SGE_O_HOME=/home/aarancibia
> SGE_ARCH=lx24-amd64
> SGE_CELL=default
> RESTARTED=0
> ARC=lx24-amd64
> USER=aarancibia
> LD_LIBRARY_PATH=/opt/mpi/mpich2-1.0.7/64/lib:/opt/intel/cmkl/9.0/lib/em64t:/opt/intel/fce/9.1.036/lib:/opt/intel/cce/9.1.042/lib
> SGE_TASK_LAST=undefined
> QUEUE=amd-test
> SGE_TASK_ID=undefined
> SGE_BINARY_PATH=/home/sys/sge/bin/lx24-amd64
> PATH=/opt/mpi/mpich2-1.0.7/64/bin:/opt/intel/fce/9.1.036/bin:/opt/intel/cce/9.1.042/bin:/home/sys/sge/bin/lx24-amd64:/local/8918.1.amd-test:/usr/local/bin:/bin:/usr/bin
> RUNLEVEL=2
> runlevel=2
> SGE_STDERR_PATH=/home/aarancibia/job_examples/test-oport/test-AMD/64/mpihello/mpich2_smpd.sh.po8918
> UPSTART_EVENT=runlevel
> F90=ifort
> PWD=/home/aarancibia/job_examples/test-oport/test-AMD/64/mpihello
> VERBOSE=yes
> SGE_STDOUT_PATH=/home/aarancibia/job_examples/test-oport/test-AMD/64/mpihello/mpich2_smpd.sh.po8918
> SGE_ACCOUNT=sge
> JOB_SCRIPT=/local/sys/sge//era-q8/job_scripts/8918
> JOB_NAME=mpich2_smpd.sh
> SGE_ROOT=/home/sys/sge
> previous=N
> PREVLEVEL=N
> F77=ifort
> REQNAME=mpich2_smpd.sh
> CXX=icc
> SGE_JOB_SPOOL_DIR=/local/sys/sge//era-q8/active_jobs/8918.1
> ENVIRONMENT=BATCH
> PE_HOSTFILE=/local/sys/sge//era-q8/active_jobs/8918.1/pe_hostfile
> SHLVL=1
> HOME=/home/aarancibia
> SGE_CWD_PATH=/home/aarancibia/job_examples/test-oport/test-AMD/64/mpihello
> NQUEUES=1
> SGE_O_LOGNAME=aarancibia
> SGE_O_MAIL=/var/mail/aarancibia
> TMP=/local/8918.1.amd-test
> JOB_ID=8918
> LOGNAME=aarancibia
> PE=mpich2-testing
> SGE_TASK_FIRST=undefined
> SGE_O_PATH=/home/sys/scripts/checks:/home/sys/scripts/fixs:/opt/mpi/mpich2-1.0.5p4/feisty-32/bin:/opt/intel/fc/9.1.036/bin:/opt/intel/cc/9.1.042/bin:/home/sys/sge/bin/lx24-x86:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/bin/X11:/usr/games:/usr/local/condor/bin:/usr/local/condor/sbin:/opt/intel/fortran/stable/bin:/opt/intel/cc/stable/bin
> UPSTART_JOB=rc2
> CC=icc
> SGE_O_HOST=cluster
> SGE_O_SHELL=/bin/bash
> REQUEST=mpich2_smpd.sh
> UPSTART_JOB_ID=3
> INCLUDE=/opt/intel/cmkl/9.0/include:
> NSLOTS=4
> SGE_STDIN_PATH=/dev/null
> _=/usr/bin/env
> ##################
> era-q8
> -catch_rsh /local/sys/sge//era-q8/active_jobs/8918.1/pe_hostfile
> /opt/mpi/mpich2-1.0.7/64
> era-q8
> era-q8
> era-q8
> era-q8
> startmpich2.sh: check for smpd daemons (1 of 10)
> corriendo rsh
> era-q8
> /home/sys/sge/bin/lx24-amd64/qrsh -inherit era-q8
> /opt/mpi/mpich2-1.0.7/64/bin/smpd -port 23918 -d 0
> startmpich2.sh: missing smpd on era-q8
> Pseudo-terminal will not be allocated because stdin is not a terminal.
> /opt/mpi/mpich2-1.0.7/64/bin/smpd: error while loading shared
> libraries: libsvml.so: cannot open shared object file: No such file or
> directory
> startmpich2.sh: check for smpd daemons (2 of 10)
> startmpich2.sh: missing smpd on era-q8
> startmpich2.sh: check for smpd daemons (3 of 10)
> startmpich2.sh: missing smpd on era-q8
> startmpich2.sh: check for smpd daemons (4 of 10)
> startmpich2.sh: missing smpd on era-q8
> startmpich2.sh: check for smpd daemons (5 of 10)
> startmpich2.sh: missing smpd on era-q8
> startmpich2.sh: check for smpd daemons (6 of 10)
> startmpich2.sh: missing smpd on era-q8
> startmpich2.sh: check for smpd daemons (7 of 10)
> startmpich2.sh: missing smpd on era-q8
> startmpich2.sh: check for smpd daemons (8 of 10)
> startmpich2.sh: missing smpd on era-q8
> startmpich2.sh: check for smpd daemons (9 of 10)
> startmpich2.sh: missing smpd on era-q8
> startmpich2.sh: check for smpd daemons (10 of 10)
> startmpich2.sh: missing smpd on era-q8
> startmpich2.sh: got only 0 of 1 nodes, aborting
> -catch_rsh /opt/mpi/mpich2-1.0.7/64
> /local/sys/sge//era-q8/active_jobs/8918.1/pe_hostfile
> /opt/mpi/mpich2-1.0.7/64/bin/smpd: error while loading shared
> libraries: libsvml.so: cannot open shared object file: No such file or
> directory
>
>
> Thanks in advance
>
> Angel Arancibia
>
>
> __________________________
>
> Ce message (et toutes ses pièces jointes éventuelles) est confidentiel et
> établi à l'intention exclusive de ses destinataires. Toute utilisation de ce
> message non conforme à sa destination, toute diffusion ou toute publication,
> totale ou partielle, est interdite, sauf autorisation expresse. L'IFP
> décline toute responsabilité au titre de ce message.
>
> This message and any attachments (the message) are confidential and intended
> solely for the addressees. Any unauthorised use or dissemination is
> prohibited. IFP should not be liable for this message.
>
> Visitez notre site Web / Visit our web site : http://www.ifp.fr
> __________________________
>