[mpich-discuss] error while loading shared libraries: libsvml.so

[REQUENA Stephane]

Hi Angel

The svml dynamic lib belongs to the intel compilers distribution, your line on the configure seems strange, i think you have
to define the needed variables prior to compile :
LDFLAGS="-L/usr/local/lib -L/opt/intel/fce/9.1.036/lib -L/opt/intel/cce/9.1.042/lib -lsvml -lpthread -lcrypto"
FFLAGS="-axW -O3 -fPIC -tpp7 -xT -fpe0 -I/opt/intel/fce/9.1.036/include -I/opt/intel/cce/9.1.042/include -c"

and then to compile

Hope it helps, best regards

Stéphane
-----Original Message-----
From: owner-mpich-discuss at mcs.anl.gov on behalf of Angel Arancibia
Sent: Mon 23/06/2008 20:16
To: mpich-discuss at mcs.anl.gov
Subject: [mpich-discuss] error while loading shared libraries: libsvml.so
 
Hi I compiled mpich2.1.0.7 with smpd (and intel compiler) but I can't
make it work.

The message is:

" /opt/mpi/mpich2-1.0.7/64/bin/smpd: error while loading shared
libraries: libsvml.so: cannot open shared object file: No such file or
directory "

It seems like a library path problem, but I can't find where. In the
configure, I passed the correct path

./configure --prefix=/opt/mpi/mpich2-1.0.7/64/ --with-pm=smpd
--with-pmi=smpd --enable-f90 'LDFLAGS=-L/usr/local/lib
-L/opt/intel/fce/9.1.036/lib -L/opt/intel/cce/9.1.042/lib -lsvml
-lpthread -lcrypto' 'FFLAGS=-axW -O3 -fPIC -tpp7 -xT -fpe0
-I/opt/intel/fce/9.1.036/include -I/opt/intel/cce/9.1.042/include -c'
2>&1 | tee config.txt

Then:

make 2>&1 | tee m.txt
make install 2>&1 | tee mi.txt

The complete message is :

(SGE script out)

aarancibia at cluster:~/job_examples/test-oport/test-AMD/64/mpihello$cat
mpich2_smpd.sh.po8918
Cargando Environment
##################
MANPATH=/opt/mpi/mpich2-1.0.7/64/man:/opt/intel/cmkl/9.0/man:/opt/intel/fce/9.1.036/man:/opt/intel/cce/9.1.042/man:/home/sys/sge/man:/usr/share/man
HOSTNAME=era-q8.cluster.ifir.edu.ar
INTEL_LICENSE_FILE=/opt/intel/cce/9.1.042/licenses:/opt/intel/licenses:/home/aarancibia/intel/licenses:/opt/intel/fce/9.1.036/licenses:/opt/intel/licenses:/home/aarancibia/intel/licenses
SGE_TASK_STEPSIZE=undefined
SHELL=/bin/sh
TERM=linux
NHOSTS=1
SGE_O_WORKDIR=/home/aarancibia/job_examples/test-oport/test-AMD/64/mpihello
TMPDIR=/local/8918.1.amd-test
QUIET=no
SGE_O_HOME=/home/aarancibia
SGE_ARCH=lx24-amd64
SGE_CELL=default
RESTARTED=0
ARC=lx24-amd64
USER=aarancibia
LD_LIBRARY_PATH=/opt/mpi/mpich2-1.0.7/64/lib:/opt/intel/cmkl/9.0/lib/em64t:/opt/intel/fce/9.1.036/lib:/opt/intel/cce/9.1.042/lib
SGE_TASK_LAST=undefined
QUEUE=amd-test
SGE_TASK_ID=undefined
SGE_BINARY_PATH=/home/sys/sge/bin/lx24-amd64
PATH=/opt/mpi/mpich2-1.0.7/64/bin:/opt/intel/fce/9.1.036/bin:/opt/intel/cce/9.1.042/bin:/home/sys/sge/bin/lx24-amd64:/local/8918.1.amd-test:/usr/local/bin:/bin:/usr/bin
RUNLEVEL=2
runlevel=2
SGE_STDERR_PATH=/home/aarancibia/job_examples/test-oport/test-AMD/64/mpihello/mpich2_smpd.sh.po8918
UPSTART_EVENT=runlevel
F90=ifort
PWD=/home/aarancibia/job_examples/test-oport/test-AMD/64/mpihello
VERBOSE=yes
SGE_STDOUT_PATH=/home/aarancibia/job_examples/test-oport/test-AMD/64/mpihello/mpich2_smpd.sh.po8918
SGE_ACCOUNT=sge
JOB_SCRIPT=/local/sys/sge//era-q8/job_scripts/8918
JOB_NAME=mpich2_smpd.sh
SGE_ROOT=/home/sys/sge
previous=N
PREVLEVEL=N
F77=ifort
REQNAME=mpich2_smpd.sh
CXX=icc
SGE_JOB_SPOOL_DIR=/local/sys/sge//era-q8/active_jobs/8918.1
ENVIRONMENT=BATCH
PE_HOSTFILE=/local/sys/sge//era-q8/active_jobs/8918.1/pe_hostfile
SHLVL=1
HOME=/home/aarancibia
SGE_CWD_PATH=/home/aarancibia/job_examples/test-oport/test-AMD/64/mpihello
NQUEUES=1
SGE_O_LOGNAME=aarancibia
SGE_O_MAIL=/var/mail/aarancibia
TMP=/local/8918.1.amd-test
JOB_ID=8918
LOGNAME=aarancibia
PE=mpich2-testing
SGE_TASK_FIRST=undefined
SGE_O_PATH=/home/sys/scripts/checks:/home/sys/scripts/fixs:/opt/mpi/mpich2-1.0.5p4/feisty-32/bin:/opt/intel/fc/9.1.036/bin:/opt/intel/cc/9.1.042/bin:/home/sys/sge/bin/lx24-x86:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/bin/X11:/usr/games:/usr/local/condor/bin:/usr/local/condor/sbin:/opt/intel/fortran/stable/bin:/opt/intel/cc/stable/bin
UPSTART_JOB=rc2
CC=icc
SGE_O_HOST=cluster
SGE_O_SHELL=/bin/bash
REQUEST=mpich2_smpd.sh
UPSTART_JOB_ID=3
INCLUDE=/opt/intel/cmkl/9.0/include:
NSLOTS=4
SGE_STDIN_PATH=/dev/null
_=/usr/bin/env
##################
era-q8
-catch_rsh /local/sys/sge//era-q8/active_jobs/8918.1/pe_hostfile
/opt/mpi/mpich2-1.0.7/64
era-q8
era-q8
era-q8
era-q8
startmpich2.sh: check for smpd daemons (1 of 10)
corriendo rsh
era-q8
/home/sys/sge/bin/lx24-amd64/qrsh -inherit era-q8
/opt/mpi/mpich2-1.0.7/64/bin/smpd -port 23918 -d 0
startmpich2.sh: missing smpd on era-q8
Pseudo-terminal will not be allocated because stdin is not a terminal.
/opt/mpi/mpich2-1.0.7/64/bin/smpd: error while loading shared
libraries: libsvml.so: cannot open shared object file: No such file or
directory
startmpich2.sh: check for smpd daemons (2 of 10)
startmpich2.sh: missing smpd on era-q8
startmpich2.sh: check for smpd daemons (3 of 10)
startmpich2.sh: missing smpd on era-q8
startmpich2.sh: check for smpd daemons (4 of 10)
startmpich2.sh: missing smpd on era-q8
startmpich2.sh: check for smpd daemons (5 of 10)
startmpich2.sh: missing smpd on era-q8
startmpich2.sh: check for smpd daemons (6 of 10)
startmpich2.sh: missing smpd on era-q8
startmpich2.sh: check for smpd daemons (7 of 10)
startmpich2.sh: missing smpd on era-q8
startmpich2.sh: check for smpd daemons (8 of 10)
startmpich2.sh: missing smpd on era-q8
startmpich2.sh: check for smpd daemons (9 of 10)
startmpich2.sh: missing smpd on era-q8
startmpich2.sh: check for smpd daemons (10 of 10)
startmpich2.sh: missing smpd on era-q8
startmpich2.sh: got only 0 of 1 nodes, aborting
-catch_rsh /opt/mpi/mpich2-1.0.7/64
/local/sys/sge//era-q8/active_jobs/8918.1/pe_hostfile
/opt/mpi/mpich2-1.0.7/64/bin/smpd: error while loading shared
libraries: libsvml.so: cannot open shared object file: No such file or
directory


Thanks in advance

Angel Arancibia


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