[MPICH] MPICH2 startup w/ PBS
Jeffrey B. Layton
laytonjb at charter.net
Tue Apr 4 08:39:34 CDT 2006
Good morning,
I hate to bother everyone early in the morning, but I'm
looking for some advice on MPICH2 startup. I've been starting
an mpd on each node in the cluster via,
mpdboot -n 25 -f /home/jlayton/mpd.hosts
where the file mpd.hosts contains a list of all possible hosts.
So I'm basically starting mpd on every node. Then I run the
code using mpiexec
mpiexec -machinefile ${PBS_NODEFILE} -n ${NP} ./${EXE}
and run mpdallexit after the code is finished to stop all of the
mpds. Notice that I'm using PBS for queuing/scheduling.
This is something of a pain, because we lose nodes for
various projects or training so I'm constantly having to go into
the list of hosts and edit it. I also have to change the count on
the mpdboot command.
Is there a better way to start up MPICH2 codes using PBS?
Thanks!
Jeff
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