Compile error?
Jong Chun Park
joumon at gmail.com
Thu Jun 9 12:07:46 CDT 2005
Hello? I'm Jong.
Can somebody help me to fix the following compiling error? I'm trying to
install HPCC on a linux cluster
which runs RH 8.0 on P3 and MPICH on GM interface. While compiling HPCC, I
got the following error.
I don't know what's wrong with it. I'd appreciate any help.
--------------------------------------------------------------------------------------------------------------------
[joumon at ll02 ~/hpcc0.8beta]$ !v
vi hpl/Make.Linux_P3
[joumon at ll02 ~/hpcc0.8beta]$ !ma
make arch=Linux_P3
mkdir hpl/lib/Linux_P3
mkdir: cannot create directory `hpl/lib/Linux_P3': File exists
make: [all] Error 1 (ignored)
( cd hpl/lib/arch/build ; make arch=Linux_P3 -f Makefile.hpcc )
make[1]: Entering directory `/users/joumon/hpcc0.8beta/hpl/lib/arch/build'
g77 -DHPL_CALL_CBLAS -I../../../include -I../../../include/Linux_P3 -I
/usr/local/parallel/mpich-gm.pgi/include/ -fomit-frame-pointer -O3
-funroll-loops -o ../../../../hpcc ../../../lib/Linux_P3/libhpl.a
/usr/local/lib/libcblas.a /usr/local/lib/libatlas.a -L
/usr/local/parallel/mpich-gm.pgi/lib -lm -lpthread -lstdc++ -lmpich -lutil
/usr/local/parallel/mpich-gm.pgi/lib/libmpich.a(gmpi_regcache.o): In
function `gmpi_regcache_init':
gmpi_regcache.o(.text+0x4f): undefined reference to `gm_hash_hash_ptr'
gmpi_regcache.o(.text+0x54): undefined reference to `gm_hash_compare_ptrs'
gmpi_regcache.o(.text+0x59): undefined reference to `gm_create_hash'
gmpi_regcache.o(.text+0x6d): undefined reference to `gm_create_lookaside'
/usr/local/parallel/mpich-gm.pgi/lib/libmpich.a(gmpi_regcache.o): In
function `gmpi_regcache_deregister':
gmpi_regcache.o(.text+0x91): undefined reference to `GM_PAGE_LEN'
gmpi_regcache.o(.text+0xa4): undefined reference to `gm_deregister_memory'
/usr/local/parallel/mpich-gm.pgi/lib/libmpich.a(gmpi_regcache.o): In
function `gmpi_regcache_garbage_collector':
gmpi_regcache.o(.text+0x11c): undefined reference to `gm_hash_remove'
gmpi_regcache.o(.text+0x153): undefined reference to `gm_lookaside_free'
gmpi_regcache.o(.text+0x17a): undefined reference to `GM_PAGE_LEN'
/usr/local/parallel/mpich-gm.pgi/lib/libmpich.a(gmpi_regcache.o): In
function `gmpi_regcache_register':
gmpi_regcache.o(.text+0x1c2): undefined reference to `GM_PAGE_LEN'
gmpi_regcache.o(.text+0x1d5): undefined reference to `gm_register_memory'
gmpi_regcache.o(.text+0x211): undefined reference to `GM_PAGE_LEN'
gmpi_regcache.o(.text+0x226): undefined reference to `gm_register_memory'
gmpi_regcache.o(.text+0x25a): undefined reference to `gm_lookaside_alloc'
gmpi_regcache.o(.text+0x293): undefined reference to `GM_PAGE_LEN'
gmpi_regcache.o(.text+0x2ba): undefined reference to `gm_hash_insert'
/usr/local/parallel/mpich-gm.pgi/lib/libmpich.a(gmpi_regcache.o): In
function `gmpi_use_interval':
gmpi_regcache.o(.text+0x32b): undefined reference to `GM_PAGE_LEN'
gmpi_regcache.o(.text+0x3b7): undefined reference to `gm_hash_find'
gmpi_regcache.o(.text+0x3da): undefined reference to `GM_PAGE_LEN'
/usr/local/parallel/mpich-gm.pgi/lib/libmpich.a(gmpi_regcache.o): In
function `gmpi_unuse_interval':
gmpi_regcache.o(.text+0x49d): undefined reference to `GM_PAGE_LEN'
gmpi_regcache.o(.text+0x4cb): undefined reference to `gm_hash_find'
gmpi_regcache.o(.text+0x4d1): undefined reference to `GM_PAGE_LEN'
/usr/local/parallel/mpich-gm.pgi/lib/libmpich.a(gmpi_regcache.o): In
function `gmpi_clear_interval':
gmpi_regcache.o(.text+0x4ff): undefined reference to `GM_PAGE_LEN'
gmpi_regcache.o(.text+0x547): undefined reference to `gm_hash_find'
gmpi_regcache.o(.text+0x55f): undefined reference to `gm_hash_remove'
gmpi_regcache.o(.text+0x593): undefined reference to `gm_lookaside_free'
gmpi_regcache.o(.text+0x59c): undefined reference to `GM_PAGE_LEN'
/usr/local/parallel/mpich-gm.pgi/lib/libmpich.a(gmpi_regcache.o): In
function `gmpi_clear_all_intervals':
gmpi_regcache.o(.text+0x603): undefined reference to `gm_destroy_hash'
gmpi_regcache.o(.text+0x60f): undefined reference to `gm_destroy_lookaside'
/usr/local/parallel/mpich-gm.pgi/lib/libmpich.a(adi2init.o): In function
`MPID_Init':
adi2init.o(.text+0x1b1): undefined reference to `gm_get_host_name'
/usr/local/parallel/mpich-gm.pgi/lib/libmpich.a(gmpi_conf.o): In function
`gmpi_allocate_port':
gmpi_conf.o(.text+0xd6): undefined reference to `gm_open'
gmpi_conf.o(.text+0x14a): undefined reference to `gm_open'
/usr/local/parallel/mpich-gm.pgi/lib/libmpich.a(gmpi_conf.o): In function
`gmpi_getconf':
gmpi_conf.o(.text+0x4a2): undefined reference to
`gm_blocking_receive_no_spin'
gmpi_conf.o(.text+0x4ac): undefined reference to `gm_receive'
gmpi_conf.o(.text+0x542): undefined reference to `gm_get_node_id'
gmpi_conf.o(.text+0x564): undefined reference to `gm_node_id_to_unique_id'
gmpi_conf.o(.text+0x5bb): undefined reference to `gm_bzero'
gmpi_conf.o(.text+0x5cf): undefined reference to `gm_get_host_name'
gmpi_conf.o(.text+0x624): undefined reference to `gm_bzero'
gmpi_conf.o(.text+0x69f): undefined reference to `gm_bzero'
gmpi_conf.o(.text+0x832): undefined reference to `gm_get_host_name'
gmpi_conf.o(.text+0x86f): undefined reference to `gm_crc'
gmpi_conf.o(.text+0x88a): undefined reference to `gm_crc'
gmpi_conf.o(.text+0x9a2): undefined reference to `GM_PAGE_LEN'
gmpi_conf.o(.text+0xa3a): undefined reference to `GM_PAGE_LEN'
gmpi_conf.o(.text+0xace): undefined reference to `gm_unique_id_to_node_id'
gmpi_conf.o(.text+0xc9b): undefined reference to `gm_blocking_receive'
gmpi_conf.o(.text+0xcaa): undefined reference to `gm_receive'
gmpi_conf.o(.text+0x1006): undefined reference to
`gm_blocking_receive_no_spin'
gmpi_conf.o(.text+0x1010): undefined reference to `gm_receive'
gmpi_conf.o(.text+0x1091): undefined reference to `gm_get_node_id'
gmpi_conf.o(.text+0x10b3): undefined reference to `gm_node_id_to_unique_id'
gmpi_conf.o(.text+0x1105): undefined reference to `gm_bzero'
gmpi_conf.o(.text+0x1123): undefined reference to `gm_bcopy'
gmpi_conf.o(.text+0x122c): undefined reference to `gm_bzero'
gmpi_conf.o(.text+0x124a): undefined reference to `gm_bcopy'
gmpi_conf.o(.text+0x126f): undefined reference to `gm_ticks'
gmpi_conf.o(.text+0x129e): undefined reference to `gm_ticks'
gmpi_conf.o(.text+0x1435): undefined reference to `gm_bzero'
gmpi_conf.o(.text+0x1adf): undefined reference to `gm_blocking_receive'
gmpi_conf.o(.text+0x1aee): undefined reference to `gm_receive'
/usr/local/parallel/mpich-gm.pgi/lib/libmpich.a(gmpi_conf.o): In function
`MPID_GetConfigInfo':
gmpi_conf.o(.text+0x1c40): undefined reference to `gm_receive'
/usr/local/parallel/mpich-gm.pgi/lib/libmpich.a(gmpi_priv.o): In function
`gmpi_dma_alloc':
gmpi_priv.o(.text+0x10): undefined reference to `gm_dma_malloc'
/usr/local/parallel/mpich-gm.pgi/lib/libmpich.a(gmpi_priv.o): In function
`gmpi_dma_free':
gmpi_priv.o(.text+0x28): undefined reference to `gm_dma_free'
/usr/local/parallel/mpich-gm.pgi/lib/libmpich.a(gmpi_priv.o): In function
`gmpi_drop_send_packet_callback':
gmpi_priv.o(.text+0x2af): undefined reference to `gm_send_with_callback'
gmpi_priv.o(.text+0x2c5): undefined reference to `gm_strerror'
/usr/local/parallel/mpich-gm.pgi/lib/libmpich.a(gmpi_priv.o): In function
`gmpi_drop_put_data_callback':
gmpi_priv.o(.text+0x353): undefined reference to
`gm_directed_send_with_callback'
gmpi_priv.o(.text+0x369): undefined reference to `gm_strerror'
/usr/local/parallel/mpich-gm.pgi/lib/libmpich.a(gmpi_priv.o): In function
`gmpi_flush_fifo':
gmpi_priv.o(.text+0x6bc): undefined reference to
`gm_directed_send_with_callback'
gmpi_priv.o(.text+0x724): undefined reference to `gm_send_with_callback'
/usr/local/parallel/mpich-gm.pgi/lib/libmpich.a(gmpi_priv.o): In function
`gmpi_send_packet':
gmpi_priv.o(.text+0x9d6): undefined reference to `gm_send_with_callback'
/usr/local/parallel/mpich-gm.pgi/lib/libmpich.a(gmpi_priv.o): In function
`gmpi_put_data':
gmpi_priv.o(.text+0xb5d): undefined reference to
`gm_directed_send_with_callback'
/usr/local/parallel/mpich-gm.pgi/lib/libmpich.a(gmpi_priv.o): In function
`gmpi_net_lookup':
gmpi_priv.o(.text+0xbd6): undefined reference to `gm_receive'
gmpi_priv.o(.text+0xc15): undefined reference to `gm_unknown'
gmpi_priv.o(.text+0xcb0): undefined reference to `gm_provide_receive_buffer'
/usr/local/parallel/mpich-gm.pgi/lib/libmpich.a(gmpi_priv.o): In function
`gmpi_init':
gmpi_priv.o(.text+0xd69): undefined reference to
`gm_allow_remote_memory_access'
gmpi_priv.o(.text+0xd82): undefined reference to `gm_num_send_tokens'
gmpi_priv.o(.text+0xd99): undefined reference to `gm_num_receive_tokens'
gmpi_priv.o(.text+0xe4b): undefined reference to `gm_dma_malloc'
gmpi_priv.o(.text+0xe62): undefined reference to `gm_dma_malloc'
gmpi_priv.o(.text+0xeab): undefined reference to `gm_set_acceptable_sizes'
gmpi_priv.o(.text+0xec9): undefined reference to `gm_set_acceptable_sizes'
gmpi_priv.o(.text+0x1018): undefined reference to
`gm_provide_receive_buffer_with_tag'
gmpi_priv.o(.text+0x1071): undefined reference to `gm_perror'
gmpi_priv.o(.text+0x10a5): undefined reference to `gm_perror'
gmpi_priv.o(.text+0x10d9): undefined reference to `gm_num_receive_tokens'
gmpi_priv.o(.text+0x10ef): undefined reference to `gm_perror'
/usr/local/parallel/mpich-gm.pgi/lib/libmpich.a(gmpi_priv.o): In function
`gmpi_finish':
gmpi_priv.o(.text+0x11e2): undefined reference to `gm_close'
/usr/local/parallel/mpich-gm.pgi/lib/libmpich.a(gmpi_priv.o): In function
`gmpi_send_packet_fifo':
gmpi_priv.o(.text+0x1526): undefined reference to `gm_send_with_callback'
/usr/local/parallel/mpich-gm.pgi/lib/libmpich.a(gmpi_priv.o): In function
`gmpi_check_send_status':
gmpi_priv.o(.text+0x15a6): undefined reference to `gm_node_id_to_host_name'
gmpi_priv.o(.text+0x15db): undefined reference to `gm_node_id_to_unique_id'
gmpi_priv.o(.text+0x1613): undefined reference to `gm_strerror'
gmpi_priv.o(.text+0x169b): undefined reference to `gm_send_with_callback'
gmpi_priv.o(.text+0x16d6): undefined reference to
`gm_directed_send_with_callback'
gmpi_priv.o(.text+0x1726): undefined reference to `gm_drop_sends'
/usr/local/parallel/mpich-gm.pgi/lib/libmpich.a(gmpi_priv.o): In function
`gmpi_packet_recv_event':
gmpi_priv.o(.text+0x1771): undefined reference to `gm_node_id_to_unique_id'
/usr/local/parallel/mpich-gm.pgi/lib/libmpich.a(gmpi_chself.o): In function
`MPID_CH_Self_isend':
gmpi_chself.o(.text+0x162): undefined reference to `gm_bcopy'
/usr/local/parallel/mpich-gm.pgi/lib/libmpich.a(gmpi_chself.o): In function
`MPID_CH_Self_send':
gmpi_chself.o(.text+0x27a): undefined reference to `gm_bcopy'
/usr/local/parallel/mpich-gm.pgi/lib/libmpich.a(gmpi_smppriv.o): In function
`smpi_queue_send':
gmpi_smppriv.o(.text+0x1f6): undefined reference to `gm_lookaside_alloc'
/usr/local/parallel/mpich-gm.pgi/lib/libmpich.a(gmpi_smppriv.o): In function
`MPID_SMP_Check_incoming':
gmpi_smppriv.o(.text+0x85b): undefined reference to `gm_lookaside_free'
/usr/local/parallel/mpich-gm.pgi/lib/libmpich.a(gmpi_smppriv.o): In function
`smpi_init':
gmpi_smppriv.o(.text+0x8cf): undefined reference to `gm_create_lookaside'
gmpi_smppriv.o(.text+0x951): undefined reference to `GM_PAGE_LEN'
gmpi_smppriv.o(.text+0xa21): undefined reference to `GM_PAGE_LEN'
gmpi_smppriv.o(.text+0xb0f): undefined reference to `GM_PAGE_LEN'
gmpi_smppriv.o(.text+0xc8a): undefined reference to `GM_PAGE_LEN'
/usr/local/parallel/mpich-gm.pgi/lib/libmpich.a(gmpi_smppriv.o): In function
`smpi_finish':
gmpi_smppriv.o(.text+0xfff): undefined reference to `GM_PAGE_LEN'
gmpi_smppriv.o(.text+0x103f): undefined reference to `gm_destroy_lookaside'
collect2: ld returned 1 exit status
make[1]: *** [../../../../hpcc] Error 1
make[1]: Leaving directory `/users/joumon/hpcc0.8beta/hpl/lib/arch/build'
make: *** [all] Error 2
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