[MOAB-dev] Disable fortran in moab-5.0.0

Thu Nov 9 10:11:22 CST 2017

Hi Lorenzo,

Yes like Paul mentioned, we require BLAS/LAPACK libraries now for
configuring MOAB, and that unfortunately imposes requirements on the
Fortran compiler to see how the symbol mangling works.

I am unsure whether we can make an exception with OSX here since the
-framework vecLib linker options should take care of everything we
need. I'll play with this today and let you know whether we can push a
fix for this right away (specific for OSX).

Vijay

On Thu, Nov 9, 2017 at 6:46 AM, Paul Wilson <paul.wilson at wisc.edu> wrote:
> Hello Lorenzo
>
> As of v5.0 MOAB requires FORTRAN to link to lapack/blas.  I discovered this
> issue with building and the master branch does have this change in the CMAKE
> files.
>
> Paul
>
> -- ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ --
> Paul P.H. Wilson
> Grainger Professor of Nuclear Engineering
> 608-263-0807
> paul.wilson at wisc.edu
> 443 Engineering Research Bldg
> 1500 Engineering Dr, Madison, WI 53706
> calendar: http://go.wisc.edu/pphw-cal
>
> Computational Nuclear Engineering Research Group
> cnerg.engr.wisc.edu
>
> [sent from my iPad]
>
> On Nov 9, 2017, at 03:57, Lorenzo Botti <bottilorenzo at gmail.com> wrote:
>
> Dear all,
> I’d like to move to the latest moab but I’m having trouble disabling
> fortran.
> I tried to modify compiler.m4 but it seems that this is not enough, see
> below
>
> dlm249-190:moab-5.0.0 digihabia$ ./configure --disable-fortran
> --disable-imesh --with-mpi=/Users/digihabia/src2/openmpi-3.0.0/openmpi/
> --download-hdf5 --prefix=/Users/digihabia/src2/moab-5.0.0/moab/
> checking build system type... x86_64-apple-darwin17.2.0
> checking host system type... x86_64-apple-darwin17.2.0
> checking target system type... x86_64-apple-darwin17.2.0
> checking for a BSD-compatible install... /usr/bin/install -c
> checking whether build environment is sane... yes
> checking for a thread-safe mkdir -p... config/install-sh -c -d
> checking for gawk... no
> checking for mawk... no
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> checking for awk... awk
> checking whether make sets $(MAKE)... yes
> checking whether make supports nested variables... yes
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> checking whether ln -s works... yes
> checking for mkdir... /bin/mkdir
> checking whether make sets $(MAKE)... (cached) yes
> checking for style of include used by make... GNU
> checking for gcc... /Users/digihabia/src2/openmpi-3.0.0/openmpi//bin/mpicc
> checking whether the C compiler works... yes
> checking for C compiler default output file name... a.out
> checking for suffix of executables...
> checking whether we are cross compiling... no
> checking for suffix of object files... o
> checking whether we are using the GNU C compiler... yes
> checking whether /Users/digihabia/src2/openmpi-3.0.0/openmpi//bin/mpicc
> accepts -g... yes
> checking for /Users/digihabia/src2/openmpi-3.0.0/openmpi//bin/mpicc option
> to accept ISO C89... none needed
> checking whether /Users/digihabia/src2/openmpi-3.0.0/openmpi//bin/mpicc
> understands -c and -o together... yes
> checking dependency style of
> /Users/digihabia/src2/openmpi-3.0.0/openmpi//bin/mpicc... gcc3
> checking how to run the C preprocessor...
> /Users/digihabia/src2/openmpi-3.0.0/openmpi//bin/mpicc -E
> checking whether we are using the GNU C++ compiler... yes
> checking whether /Users/digihabia/src2/openmpi-3.0.0/openmpi//bin/mpicxx
> accepts -g... yes
> checking dependency style of
> /Users/digihabia/src2/openmpi-3.0.0/openmpi//bin/mpicxx... gcc3
> checking how to run the C++ preprocessor...
> /Users/digihabia/src2/openmpi-3.0.0/openmpi//bin/mpicxx -E
> checking how to get verbose linking output from ... configure: WARNING:
> compilation failed
>
> checking for Fortran 77 libraries of ...
> checking how to get verbose linking output from ... configure: WARNING:
> compilation failed
>
> checking for Fortran libraries of ...
> checking for known C compilers... Clang
> checking for known compiler/OS combinations... Clang:x86_64
> checking for known c++ compilers... Clang
> checking for known compiler/CPU/OS combinations... Clang:darwin17.2.0:x86_64
> checking if platform is IBM BlueGene... no
> checking whether ln -s works... yes
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> checking how to print strings... printf
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> checking for grep that handles long lines and -e... /usr/bin/grep
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> checking for ld used by
> /Users/digihabia/src2/openmpi-3.0.0/openmpi//bin/mpicc...
> /Library/Developer/CommandLineTools/usr/bin/ld
> checking if the linker (/Library/Developer/CommandLineTools/usr/bin/ld) is
> GNU ld... no
> checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
> checking the name lister (/usr/bin/nm -B) interface... BSD nm
> checking the maximum length of command line arguments... 196608
> checking how to convert x86_64-apple-darwin17.2.0 file names to
> x86_64-apple-darwin17.2.0 format... func_convert_file_noop
> checking how to convert x86_64-apple-darwin17.2.0 file names to toolchain
> format... func_convert_file_noop
> checking for /Library/Developer/CommandLineTools/usr/bin/ld option to reload
> object files... -r
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> checking for ranlib... ranlib
> checking command to parse /usr/bin/nm -B output from
> /Users/digihabia/src2/openmpi-3.0.0/openmpi//bin/mpicc object... ok
> checking for sysroot... no
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> checking how to truncate binary pipes... /bin/dd bs=4096 count=1
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> checking for objdir... .libs
> checking if /Users/digihabia/src2/openmpi-3.0.0/openmpi//bin/mpicc supports
> -fno-rtti -fno-exceptions... yes
> checking for /Users/digihabia/src2/openmpi-3.0.0/openmpi//bin/mpicc option
> to produce PIC... -fno-common -DPIC
> checking if /Users/digihabia/src2/openmpi-3.0.0/openmpi//bin/mpicc PIC flag
> -fno-common -DPIC works... yes
> checking if /Users/digihabia/src2/openmpi-3.0.0/openmpi//bin/mpicc static
> flag -static works... no
> checking if /Users/digihabia/src2/openmpi-3.0.0/openmpi//bin/mpicc supports
> -c -o file.o... yes
> checking if /Users/digihabia/src2/openmpi-3.0.0/openmpi//bin/mpicc supports
> -c -o file.o... (cached) yes
> checking whether the /Users/digihabia/src2/openmpi-3.0.0/openmpi//bin/mpicc
> linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared
> libraries... yes
> checking dynamic linker characteristics... darwin17.2.0 dyld
> checking how to hardcode library paths into programs... immediate
> checking for dlopen in -ldl... yes
> checking whether a program can dlopen itself... yes
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> checking whether stripping libraries is possible... yes
> checking if libtool supports shared libraries... yes
> checking whether to build shared libraries... no
> checking whether to build static libraries... yes
> checking how to run the C++ preprocessor...
> /Users/digihabia/src2/openmpi-3.0.0/openmpi//bin/mpicxx -E
> checking for ld used by
> /Users/digihabia/src2/openmpi-3.0.0/openmpi//bin/mpicxx...
> /Library/Developer/CommandLineTools/usr/bin/ld
> checking if the linker (/Library/Developer/CommandLineTools/usr/bin/ld) is
> GNU ld... no
> checking whether the /Users/digihabia/src2/openmpi-3.0.0/openmpi//bin/mpicxx
> linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared
> libraries... yes
> checking for /Users/digihabia/src2/openmpi-3.0.0/openmpi//bin/mpicxx option
> to produce PIC... -fno-common -DPIC
> checking if /Users/digihabia/src2/openmpi-3.0.0/openmpi//bin/mpicxx PIC flag
> -fno-common -DPIC works... yes
> checking if /Users/digihabia/src2/openmpi-3.0.0/openmpi//bin/mpicxx static
> flag -static works... no
> checking if /Users/digihabia/src2/openmpi-3.0.0/openmpi//bin/mpicxx supports
> -c -o file.o... yes
> checking if /Users/digihabia/src2/openmpi-3.0.0/openmpi//bin/mpicxx supports
> -c -o file.o... (cached) yes
> checking whether the /Users/digihabia/src2/openmpi-3.0.0/openmpi//bin/mpicxx
> linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared
> libraries... yes
> checking dynamic linker characteristics... darwin17.2.0 dyld
> checking how to hardcode library paths into programs... immediate
> checking whether byte ordering is bigendian... no
> checking for gunzip... gunzip -c
> checking for gzip... (cached) gunzip -c
> checking for zcat... (cached) gunzip -c
> checking if C++ compiler supports template class specialization... yes
> checking if C++ compiler supports template function specialization... yes
> checking if /Users/digihabia/src2/openmpi-3.0.0/openmpi//bin/mpicxx works...
> yes
> checking for vsnprintf... yes
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> checking for clock... yes
> checking for times... yes
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> checking if std::vector has templatized insert method... yes
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> checking fcntl.h usability... yes
> checking fcntl.h presence... yes
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> checking sys/file.h usability... yes
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> checking sys/time.h usability... yes
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> checking size of void *... 8
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> checking for dlopen in -ldl... (cached) yes
> checking for compress in -lz... yes
> checking for pow in -lm... yes
> checking for dummy main to link with Fortran libraries... none
> checking for Fortran name-mangling scheme... configure: error: in
> `/Users/digihabia/src2/moab-5.0.0':
> configure: error: cannot compile a simple Fortran program
> See `config.log' for more details