[MOAB-dev] mbconvert and HDF5-1.10

[Rob Latham]

I tried running mbconvert with the recently released HDF5-1.10 library. 
  That library seems unable to read MeshFiles/unittest/64bricks_12ktet.h5m ?

I built my own HDF5-1.10, so maybe I needed to configure with an extra 
backwards compatibility flag?

HDF5:
../configure --prefix=/homes/robl/soft/hdf5-1.10.0 CC=mpicc \
	--enable-parallel

MOAB:
../configure CC=mpicc CXX=mpicxx \
      --with-hdf5=/homes/robl/soft/hdf5-1.10.0 \
      --with-mpi=/homes/robl/soft/mpich \
      --prefix=/homes/robl/soft/moab-logfs

and finally, mbconvert:

mpiexec -np $((PBS_NNODES*4)) ./build-1.8.17/tools/mbconvert \
                 -O PARALLEL=READ_PART -O PARTITION=PARALLEL_PARTITION \
                 -O PARALLEL_RESOLVE_SHARED_ENTS -o PARALLEL=WRITE_PART \
                 MeshFiles/unittest/64bricks_12ktet.h5m 
/lcrc/project/radix/robl/moab/out-gpfs

But when I do that, I get this error:

HDF5-DIAG: Error detected in HDF5 (1.10.0) MPI-process 0:
   #000: ../../src/H5F.c line 575 in H5Fopen(): can't set access and 
transfer property lists
     major: File accessibilty
     minor: Can't set value
   #001: ../../src/H5Pint.c line 5506 in H5P_verify_apl_and_dxpl(): not 
the required access property list
     major: Property lists
     minor: Inappropriate type
   #002: ../../src/H5Pint.c line 3767 in H5P_isa_class(): not a property 
list
     major: Invalid arguments to routine
     minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.10.0) MPI-process 0:
   #000: ../../src/H5G.c line 464 in H5Gopen2(): not a location
     major: Invalid arguments to routine
     minor: Inappropriate type
   #001: ../../src/H5Gloc.c line 253 in H5G_loc(): invalid object ID
     major: Invalid arguments to routine
     minor: Bad value
HDF5-DIAG: Error detected in HDF5 (1.10.0) MPI-process 0:
   #000: ../../src/H5F.c line 749 in H5Fclose(): not a file ID
     major: Invalid arguments to routine
     minor: Inappropriate type
[0]MOAB ERROR: --------------------- Error Message 
------------------------------------
[0]MOAB ERROR: NULL file handle.!
[0]MOAB ERROR: is_error() line 133 in src/io/ReadHDF5.hpp
[0]MOAB ERROR: --------------------- Error Message 
------------------------------------
[0]MOAB ERROR: Failed to load file after trying all possible readers!
[0]MOAB ERROR: serial_load_file() line 635 in src/Core.cpp
[0]MOAB ERROR: --------------------- Error Message 
------------------------------------
[0]MOAB ERROR: Failed in step PARALLEL READ PART!
[0]MOAB ERROR: load_file() line 553 in src/parallel/ReadParallel.cpp
[0]MOAB ERROR: load_file() line 252 in src/parallel/ReadParallel.cpp
[0]MOAB ERROR: load_file() line 515 in src/Core.cpp


==rob