[MOAB-dev] [Nek5000-users] MOAB partitioning

[Popov, Emilian L.]

Hello Vijay,

Is there any resolution on the below.

Thanks,
-emilian

From: nek5000-users-bounces at lists.mcs.anl.gov [mailto:nek5000-users-bounces at lists.mcs.anl.gov] On Behalf Of nek5000-users at lists.mcs.anl.gov
Sent: Tuesday, October 27, 2015 2:59 PM
To: nek5000-users at lists.mcs.anl.gov; moab-dev at mcs.anl.gov
Subject: Re: [Nek5000-users] MOAB partitioning

Emilian,

Let's fix the MOAB related issues first on the MOAB mailing list. Please send us your config.log file so that we can provide pointers to fix the configuration problems. Once this is done, we can revisit NEK-MOAB.

Vijay

On Monday, October 26, 2015, <nek5000-users at lists.mcs.anl.gov<mailto:nek5000-users at lists.mcs.anl.gov>> wrote:
Vijay,
I downloaded moab-4.8.2 and configured and then ran ‘make’, but am getting errors from missing ‘mpi.h’ and metis.h, perhaps the configuration is not OK?


Thanks,
-emilian

From: nek5000-users-bounces at lists.mcs.anl.gov<javascript:_e(%7B%7D,'cvml','nek5000-users-bounces at lists.mcs.anl.gov');> [mailto:nek5000-users-bounces at lists.mcs.anl.gov<javascript:_e(%7B%7D,'cvml','nek5000-users-bounces at lists.mcs.anl.gov');>] On Behalf Of nek5000-users at lists.mcs.anl.gov<javascript:_e(%7B%7D,'cvml','nek5000-users at lists.mcs.anl.gov');>
Sent: Friday, October 23, 2015 12:24 PM
To: nek5000-users at lists.mcs.anl.gov<javascript:_e(%7B%7D,'cvml','nek5000-users at lists.mcs.anl.gov');>
Subject: Re: [Nek5000-users] MOAB partitioning

What version of MOAB are you using ? It should be available with the last MOAB 4.8.2 release [1] I think. Let us know if you have problems.

Vijay

[1] http://ftp.mcs.anl.gov/pub/fathom/moab-4.8.2.tar.gz

On Friday, October 23, 2015, <nek5000-users at lists.mcs.anl.gov<javascript:_e(%7B%7D,'cvml','nek5000-users at lists.mcs.anl.gov');>> wrote:
Thanks Vijay, however the option ‘—with-metis’ does not seem to exist, please advice.


-emilian

From: nek5000-users-bounces at lists.mcs.anl.gov<mailto:nek5000-users-bounces at lists.mcs.anl.gov> [mailto:nek5000-users-bounces at lists.mcs.anl.gov] On Behalf Of nek5000-users at lists.mcs.anl.gov<mailto:nek5000-users at lists.mcs.anl.gov>
Sent: Friday, October 23, 2015 11:35 AM
To: nek5000-users at lists.mcs.anl.gov<mailto:nek5000-users at lists.mcs.anl.gov>
Subject: Re: [Nek5000-users] MOAB partitioning

Emilian,

If you want the partitioner tools, you need to configure MOAB with either metis (--with-metis=DIR) or with zoltan and optionally parmetis. Let us know if you have questions. The metis installation route is extremely straightforward and you should not encounter any issues.

Vijay

On Friday, October 23, 2015, <nek5000-users at lists.mcs.anl.gov<mailto:nek5000-users at lists.mcs.anl.gov>> wrote:
Dear Nek/Moab users,

I built Moab, but in the bin folder the ‘mbpart’ code is missing and I need it to partition an .h5m mesh file for Nek.

Any suggestions?

Thanks,
-emilian

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