[MOAB-dev] make check returns error when installing moab

[the lily]

Hi Everyone,
I'm trying to install moab to use it with DIY http://www.mcs.anl.gov/~tpeterka/I tried the following commands to install moab
 ./configure --with-mpi --with-hdf5=/usr/local/hdf5 --prefix=/Users/lab/Documents/Code/moab-4.6.3/bld --disable-fortranmake make check but until now I was not able to install moab and Im getting the following errors 
ld: symbol(s) not found for architecture x86_64clang: error: linker command failed with exit code 1 (use -v to see invocation)make[4]: *** [testc_cbind] Error 1make[3]: *** [check-am] Error 2make[2]: *** [check] Error 2make[1]: *** [check-recursive] Error 1make: *** [check-recursive] Error 1

and now even diy is not working and I think it is something has to do with mpi because I'm trying to run a code that include some mpi call and I'm getting the following errors
      MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype const&), bool) in merge.old: symbol(s) not found for architecture x86_64clang: error: linker command failed with exit code 1 (use -v to see invocation)










make: *** [merge] Error 1
I hope someone call help me to fix this From: the.1.lily at hotmail.com
To: vijay.m at gmail.com
CC: iulian at mcs.anl.gov; moab-dev at mcs.anl.gov
Subject: RE: [MOAB-dev] make check returns error when installing moab
Date: Tue, 22 Jul 2014 02:11:45 +0300




when I run config I do not get any errors but when I do make and make check I get the following








ld: symbol(s) not found for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make[4]: *** [testc_cbind] Error 1
make[3]: *** [check-am] Error 2
make[2]: *** [check] Error 2
make[1]: *** [check-recursive] Error 1
make: *** [check-recursive] Error 1
Thanks.
> From: vijay.m at gmail.com
> Date: Mon, 21 Jul 2014 17:48:42 -0500
> Subject: Re: [MOAB-dev] make check returns error when installing moab
> To: the.1.lily at hotmail.com
> CC: iulian at mcs.anl.gov; moab-dev at mcs.anl.gov
> 
> The log shows that the fortran compiler is invalid in your OpenMPI
> installation. That is perfectly fine. We will have to disable fortran
> support if an appropriate compiler is not found.
> 
> Can you try again with ./configure --with-mpi
> --with-hdf5=/usr/local/hdf5
> --prefix=/Users/lab/Documents/Code/moab-4.6.3/bld --disable-fortran
> 
> Let us know if configure still fails, along with config logs.
> 
> Vijay
> 
> On Mon, Jul 21, 2014 at 5:41 PM, the lily <the.1.lily at hotmail.com> wrote:
> > Hi Grindeanu,
> >
> > Thank you for your help. Attached the config.log
> >
> > Thank you.
> >
> >
> >
> > ________________________________
> > From: iulian at mcs.anl.gov
> >
> > To: the.1.lily at hotmail.com; moab-dev at mcs.anl.gov
> > Subject: RE: [MOAB-dev] make check returns error when installing moab
> > Date: Mon, 21 Jul 2014 14:12:47 +0000
> >
> >
> > what version of moab did you try?
> > checkout a fresh clone from master
> > (git at bitbucket.org:fathomteam/moab.git)
> >
> > can you send your config.log ?
> >
> > Iulian
> > ________________________________
> > From: moab-dev-bounces at mcs.anl.gov [moab-dev-bounces at mcs.anl.gov] on behalf
> > of the lily [the.1.lily at hotmail.com]
> > Sent: Monday, July 21, 2014 3:07 AM
> > To: moab-dev at mcs.anl.gov
> > Subject: [MOAB-dev] make check returns error when installing moab
> >
> > Hi everyone,
> >
> > I keep getting an error when I try to install moab, here are the steps I did
> > and the output for each step,
> >
> > Step1: ./configure
> > output:
> >
> > configure: WARNING:
> >
> > *************************************************************************
> >
> > *            MOAB has been configured w/out the HDF5 library.
> >
> > *              Support for native file format is disabled!
> >
> > *************************************************************************
> >
> > configure: WARNING:
> >
> > *************************************************************************
> >
> > *           MOAB has been configured w/out the NetCDF library.
> >
> > *     Support for ExodusII/Genesis and other file formats is disabled!
> >
> > *************************************************************************
> >
> >
> > Step2: make
> >
> > output:
> >
> > make[3]: Nothing to be done for `all-am'.
> >
> > Making all in io
> >
> > make[3]: Nothing to be done for `all'.
> >
> > Making all in dual
> >
> > make[3]: Nothing to be done for `all'.
> >
> > Making all in obb
> >
> > make[3]: Nothing to be done for `all'.
> >
> > Making all in perf
> >
> > Making all in point_location
> >
> > make[4]: Nothing to be done for `all'.
> >
> > make[4]: Nothing to be done for `all-am'.
> >
> > Making all in dagmc
> >
> > make[3]: Nothing to be done for `all'.
> >
> > Making all in oldinc
> >
> > make[3]: Nothing to be done for `all'.
> >
> > Making all in doc
> >
> > make[2]: Nothing to be done for `all'.
> >
> > ./config.status --version | \
> >
> >   sed -e 's/.*options "\(.*\)"/\1/p' -e 'd' | \
> >
> >   tr "'" "\n" | \
> >
> >   sed -e '/^ *$/d' > moab.config
> >
> >
> > Step3: make check
> >
> > output:
> >
> > libtool: link: unrecognized option `-O2'
> >
> > libtool: link: Try `libtool --help' for more information.
> >
> > make[4]: *** [ScdMeshF90] Error 1
> >
> > make[3]: *** [check-am] Error 2
> >
> > make[2]: *** [check] Error 2
> >
> > make[1]: *** [check-recursive] Error 1
> >
> > make: *** [check-recursive] Error 1
> >
> >
> >
> > I do not know what exactly went wrong, do I need to install any libraries
> > before installing moab?
> >
> > Thank you.
 		 	   		   		 	   		  
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