[MOAB-dev] Build failed in Jenkins: moab_serial #309

Mon May 19 14:28:44 CDT 2014

Iulian, the hdf5 and netcdf dependencies for the Jenkins build need to
be updated (or at least the config in gnep). And make sure both the
serial and parallel builds + tests are run after every commit/merge.

Vijay

On Tue, May 20, 2014 at 12:53 AM,  <jenkins-ci at mcs.anl.gov> wrote:
> See <https://jenkins-ci.mcs.anl.gov/job/moab_serial/309/changes>
>
> Changes:
>
> [wuda] For NC reader, dimensions (coordinate variables) can be excluded from user specified variables as they are read to the file set by default.
>
> ------------------------------------------
> Started by an SCM change
> [EnvInject] - Loading node environment variables.
> Building remotely on churn.mcs.anl.gov in workspace <https://jenkins-ci.mcs.anl.gov/job/moab_serial/ws/>
> Checkout:moab_serial / <https://jenkins-ci.mcs.anl.gov/job/moab_serial/ws/> - hudson.remoting.Channel at 696ed704:churn.mcs.anl.gov
> Using strategy: Default
> Last Built Revision: Revision cf2ba4e531d5d2db0753a5b0ffdefdcc17b05ddf (origin/master)
> Fetching changes from 1 remote Git repository
> Fetching upstream changes from origin
> Commencing build of Revision 05cc593b26bb95145f827239ead0ce40f0d6e543 (origin/master)
> Checking out Revision 05cc593b26bb95145f827239ead0ce40f0d6e543 (origin/master)
> [EnvInject] - Executing scripts and injecting environment variables after the SCM step.
> [EnvInject] - Injecting as environment variables the properties content
> INSTALLDIR=/home/autotest/jenkins
> HDF5SH=/homes/sharp/3rdparty/hdf5/hdf5-1.8.3/serial/gcc
> NETCDFSER=/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/serial/gcc
> LD_LIBRARY_PATH=$HDF5SH/lib:$NETCDFSER/lib:/usr/lib/jvm/java-6-openjdk-amd64/jre/lib/amd64/server:/usr/lib/jvm/java-6-openjdk-amd64/jre/lib/amd64:/usr/lib/jvm/java-6-openjdk-amd64/jre/../lib/amd64
>
> [EnvInject] - Variables injected successfully.
> [moab_serial] $ /bin/sh -xe /tmp/hudson8457451716141929683.sh
> + autoreconf -fi
> libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, `config'.
> libtoolize: copying file `config/config.guess'
> libtoolize: copying file `config/config.sub'
> libtoolize: copying file `config/install-sh'
> libtoolize: copying file `config/ltmain.sh'
> libtoolize: putting macros in AC_CONFIG_MACRO_DIR, `config'.
> libtoolize: copying file `config/libtool.m4'
> libtoolize: copying file `config/ltoptions.m4'
> libtoolize: copying file `config/ltsugar.m4'
> libtoolize: copying file `config/ltversion.m4'
> libtoolize: copying file `config/lt~obsolete.m4'
> MeshFiles/unittest/io/Makefile.am:8: whitespace following trailing backslash
> + ./configure --prefix=/home/autotest/jenkins/moab_ser --with-hdf5=/homes/sharp/3rdparty/hdf5/hdf5-1.8.3/serial/gcc --with-netcdf=/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/serial/gcc
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> configure: error: "/homes/sharp/3rdparty/hdf5/hdf5-1.8.3/serial/gcc is not a directory."
> Build step 'Execute shell' marked build as failure