[MOAB-dev] Build failed in Jenkins: moab_serial #309

Mon May 19 14:23:33 CDT 2014

See <https://jenkins-ci.mcs.anl.gov/job/moab_serial/309/changes>

Changes:

[wuda] For NC reader, dimensions (coordinate variables) can be excluded from user specified variables as they are read to the file set by default.

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Started by an SCM change
[EnvInject] - Loading node environment variables.
Building remotely on churn.mcs.anl.gov in workspace <https://jenkins-ci.mcs.anl.gov/job/moab_serial/ws/>
Checkout:moab_serial / <https://jenkins-ci.mcs.anl.gov/job/moab_serial/ws/> - hudson.remoting.Channel at 696ed704:churn.mcs.anl.gov
Using strategy: Default
Last Built Revision: Revision cf2ba4e531d5d2db0753a5b0ffdefdcc17b05ddf (origin/master)
Fetching changes from 1 remote Git repository
Fetching upstream changes from origin
Commencing build of Revision 05cc593b26bb95145f827239ead0ce40f0d6e543 (origin/master)
Checking out Revision 05cc593b26bb95145f827239ead0ce40f0d6e543 (origin/master)
[EnvInject] - Executing scripts and injecting environment variables after the SCM step.
[EnvInject] - Injecting as environment variables the properties content 
INSTALLDIR=/home/autotest/jenkins
HDF5SH=/homes/sharp/3rdparty/hdf5/hdf5-1.8.3/serial/gcc
NETCDFSER=/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/serial/gcc
LD_LIBRARY_PATH=$HDF5SH/lib:$NETCDFSER/lib:/usr/lib/jvm/java-6-openjdk-amd64/jre/lib/amd64/server:/usr/lib/jvm/java-6-openjdk-amd64/jre/lib/amd64:/usr/lib/jvm/java-6-openjdk-amd64/jre/../lib/amd64

[EnvInject] - Variables injected successfully.
[moab_serial] $ /bin/sh -xe /tmp/hudson8457451716141929683.sh
+ autoreconf -fi
libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, `config'.
libtoolize: copying file `config/config.guess'
libtoolize: copying file `config/config.sub'
libtoolize: copying file `config/install-sh'
libtoolize: copying file `config/ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIR, `config'.
libtoolize: copying file `config/libtool.m4'
libtoolize: copying file `config/ltoptions.m4'
libtoolize: copying file `config/ltsugar.m4'
libtoolize: copying file `config/ltversion.m4'
libtoolize: copying file `config/lt~obsolete.m4'
MeshFiles/unittest/io/Makefile.am:8: whitespace following trailing backslash
+ ./configure --prefix=/home/autotest/jenkins/moab_ser --with-hdf5=/homes/sharp/3rdparty/hdf5/hdf5-1.8.3/serial/gcc --with-netcdf=/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/serial/gcc
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
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checking whether the f77 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
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checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
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checking for Fortran libraries of gfortran...  -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../.. -lgfortran -lm -lquadmath
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configure: creating ./config.lt
config.lt: creating libtool
checking ieeefp.h usability... no
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configure: error: "/homes/sharp/3rdparty/hdf5/hdf5-1.8.3/serial/gcc is not a directory."
Build step 'Execute shell' marked build as failure