[MOAB-dev] buildbot failure in moab-cgns: failed shell test install
Iulian Grindeanu
iulian at mcs.anl.gov
Tue Nov 26 09:12:18 CST 2013
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- Next message: [MOAB-dev] commit/MOAB: danwu: In ScdNCHelper::read_scd_variable_to_nonset(), the values of ni and nj are incorrectly swapped. Fortunately, this have not caused any bugs so far, as we can verify or even prove that kji_to_jik(ni, nj, nk, ...) produces the same result as kji_to_jik(nj, ni, nk, ...). For code clarity and consistency, ni, nj and nk are set such that ni stands for lon (or slon), nj stands for lat (or slat) and nk stands for lev.
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configuration/buildbot error, you can safely ignore.
----- Original Message -----
| Fathom : moab-cgns build #5
| Results: failed shell test install
| Buildslave: gnep
| Revision: None
| Reason: The Nightly scheduler named 'moab-cgns' triggered this build
| Log Excerpt
| make[1]: Entering directory `/disks/itaps-buildslave/moab-cgns/build'
| Making install in src
| make[2]: Entering directory
| `/disks/itaps-buildslave/moab-cgns/build/src'
| make install-recursive
| make[3]: Entering directory
| `/disks/itaps-buildslave/moab-cgns/build/src'
| Making install in parallel
| make[4]: Entering directory
| `/disks/itaps-buildslave/moab-cgns/build/src/parallel'
| make[5]: Entering directory
| `/disks/itaps-buildslave/moab-cgns/build/src/parallel'
| make[5]: Nothing to be done for `install-exec-am'.
| test -z "/homes/fathom/install/occparsta/moabcslam/include" ||
| /bin/mkdir -p "/homes/fathom/install/occparsta/moabcslam/include"
| /usr/bin/install -c -m 644 moab_mpi.h moab_mpi_config.h
| MBParallelConventions.h WriteHDF5Parallel.hpp
| '/homes/fathom/install/occparsta/moabcslam/include/.'
| /bin/mkdir -p
| '/homes/fathom/install/occparsta/moabcslam/include/moab'
| /usr/bin/install -c -m 644 moab/gs.hpp moab/ParallelComm.hpp
| moab/ParallelMergeMesh.hpp moab/ProcConfig.hpp moab/ParallelData.hpp
| moab/TupleList.hpp
| '/homes/fathom/install/occparsta/moabcslam/include/moab'
| ...Making install in io
| make[4]: Entering directory
| `/disks/itaps-buildslave/moab-cgns/build/src/io'
| Making install in mhdf
| make[5]: Entering directory
| `/disks/itaps-buildslave/moab-cgns/build/src/io/mhdf'
| make[6]: Entering directory
| `/disks/itaps-buildslave/moab-cgns/build/src/io/mhdf'
| test -z "/homes/fathom/install/occparsta/moabcslam/bin" || /bin/mkdir
| -p "/homes/fathom/install/occparsta/moabcslam/bin"
| /bin/sh ../../../libtool --mode=install /usr/bin/install -c h5minfo
| h5mvalidate '/homes/fathom/install/occparsta/moabcslam/bin'
| libtool: install: /usr/bin/install -c h5minfo
| /homes/fathom/install/occparsta/moabcslam/bin/h5minfo
| libtool: install: /usr/bin/install -c h5mvalidate
| /homes/fathom/install/occparsta/moabcslam/bin/h5mvalidate
| make[6]: Nothing to be done for `install-data-am'.
| ...Making install in .
| make[5]: Entering directory
| `/disks/itaps-buildslave/moab-cgns/build/src/io'
| /bin/sh ../../libtool --tag=CXX --mode=compile
| /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx
| -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel
| -I../../src -I/homes/fathom/3rdparty/cgns/cgns314/include
| -I/homes/iulian/lib/pnetcdf/include
| -I/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/include
| -I/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/include
| -isystem /homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/include
| -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION
| -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE
| -DHDF5_PARALLEL -DNETCDF_FILE -DPNETCDF_FILE -DCGNS_FILE
| -DHAVE_ZOLTAN -DCGM -DIS_BUILDING_MB -I.. -I./.. -I./../parallel
| -I./../../tools/mbzoltan -I/home/fathom/3rdparty/Zoltan_v3.3/include
| -I./mhdf/include -DTEMPLATE_DEFS_INCLUDED -DHAVE_OCC
| -DHAVE_OCC_IGES -DHAVE_OCC_STEP -DHAVE_OCC_STL
| -I/homes/fathom/3rdparty/occ/OpenCASCADE6.5.3/gccGnep/inc -D_OCC64
| -DHAVE_IOSTREAM -DHAVE_IOMANIP -DHAVE_F
| STREAM -DHAVE_LIMITS_H -I/homes/fathom/install/occparsta/cgm/include
| -DCGM -DUNORDERED_MAP_NS=std::tr1
| -DHAVE_UNORDERED_MAP=tr1/unordered_map
| -DHAVE_UNORDERED_SET=tr1/unordered_set -Wall -pipe -pedantic
| -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat
| -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -MT
| ReadCGM.lo -MD -MP -MF .deps/ReadCGM.Tpo -c -o ReadCGM.lo
| ReadCGM.cpp
| libtool: compile:
| /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx
| -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel
| -I../../src -I/homes/fathom/3rdparty/cgns/cgns314/include
| -I/homes/iulian/lib/pnetcdf/include
| -I/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/include
| -I/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/include
| -isystem /homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/include
| -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION
| -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE
| -DHDF5_PARALLEL -DNETCDF_FILE -DPNETCDF_FILE -DCGNS_FILE
| -DHAVE_ZOLTAN -DCGM -DIS_BUILDING_MB -I.. -I./.. -I./../parallel
| -I./../../tools/mbzoltan -I/home/fathom/3rdparty/Zoltan_v3.3/include
| -I./mhdf/include -DTEMPLATE_DEFS_INCLUDED -DHAVE_OCC -DHAVE_OCC_IGES
| -DHAVE_OCC_STEP -DHAVE_OCC_STL
| -I/homes/fathom/3rdparty/occ/OpenCASCADE6.5.3/gccGnep/inc -D_OCC64
| -DHAVE_IOSTREAM -DHAVE_IOMANIP -DHAVE_FSTREAM -DHAVE_LIMITS_H
| -I/homes/fathom/i
| nstall/occparsta/cgm/include -DCGM -DUNORDERED_MAP_NS=std::tr1
| -DHAVE_UNORDERED_MAP=tr1/unordered_map
| -DHAVE_UNORDERED_SET=tr1/unordered_set -Wall -pipe -pedantic
| -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat
| -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -MT
| ReadCGM.lo -MD -MP -MF .deps/ReadCGM.Tpo -c ReadCGM.cpp -o ReadCGM.o
| ReadCGM.cpp:19:25: error: cgm_version.h: No such file or directory
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- Previous message: [MOAB-dev] buildbot failure in moab-cgns: failed shell test install
- Next message: [MOAB-dev] commit/MOAB: danwu: In ScdNCHelper::read_scd_variable_to_nonset(), the values of ni and nj are incorrectly swapped. Fortunately, this have not caused any bugs so far, as we can verify or even prove that kji_to_jik(ni, nj, nk, ...) produces the same result as kji_to_jik(nj, ni, nk, ...). For code clarity and consistency, ni, nj and nk are set such that ni stands for lon (or slon), nj stands for lat (or slat) and nk stands for lev.
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