[MOAB-dev] Build failed in Jenkins: moab_par_zoltan #4

[Iulian Grindeanu]

sorry about the false alarm 
wrong configuration settings :( 

----- Original Message -----

| See <https://jenkins-ci.mcs.anl.gov/job/moab_par_zoltan/4/>

| ------------------------------------------
| Started by an SCM change
| [EnvInject] - Loading node environment variables.
| Building remotely on churn.mcs.anl.gov in workspace
| <https://jenkins-ci.mcs.anl.gov/job/moab_par_zoltan/ws/>
| Checkout:moab_par_zoltan /
| <https://jenkins-ci.mcs.anl.gov/job/moab_par_zoltan/ws/> -
| hudson.remoting.Channel at 23940bf1:churn.mcs.anl.gov
| Using strategy: Default
| Last Built Revision: Revision
| eb9ac92ccd0af5fb762d42365b7bfd8f6b647a6a (origin/master)
| Fetching changes from 1 remote Git repository
| Fetching upstream changes from origin
| Commencing build of Revision eb9ac92ccd0af5fb762d42365b7bfd8f6b647a6a
| (origin/master)
| Checking out Revision eb9ac92ccd0af5fb762d42365b7bfd8f6b647a6a
| (origin/master)
| [EnvInject] - Executing scripts and injecting environment variables
| after the SCM step.
| [EnvInject] - Injecting as environment variables the properties
| content
| CUBIT13=/homes/fathom/3rdparty/cubit/Cubit64/Cubit-13.1
| INSTALLDIR=/home/autotest/jenkins
| HDF5PAR=/homes/fathom/3rdparty/hdf5-1.8.8-par-mpich2.1.5-gcc
| NETCDF_PATH=/homes/fathom/3rdparty/netcdf/netcdf-4.2.1.1/gcc
| PNETCDF_PATH=/homes/fathom/3rdparty/pnetcdf-mpich2-1.5
| ZOLTAN_PATH=/homes/fathom/3rdparty/Zoltan_v3.3
| PARMETIS_PATH=/homes/fathom/3rdparty/ParMETIS3_1/gcc
| LD_LIBRARY_PATH=$CUBIT13/bin:$HDF5PAR/lib:/usr/lib/jvm/java-6-openjdk-amd64/jre/lib/amd64/server:/usr/lib/jvm/java-6-openjdk-amd64/jre/lib/amd64:/usr/lib/jvm/java-6-openjdk-amd64/jre/../lib/amd64

| [EnvInject] - Variables injected successfully.
| [moab_par_zoltan] $ /bin/sh -xe /tmp/hudson8817697125089741681.sh
| + autoreconf -fi
| libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, `config'.
| libtoolize: copying file `config/config.guess'
| libtoolize: copying file `config/config.sub'
| libtoolize: copying file `config/install-sh'
| libtoolize: copying file `config/ltmain.sh'
| libtoolize: putting macros in AC_CONFIG_MACRO_DIR, `config'.
| libtoolize: copying file `config/libtool.m4'
| libtoolize: copying file `config/ltoptions.m4'
| libtoolize: copying file `config/ltsugar.m4'
| libtoolize: copying file `config/ltversion.m4'
| libtoolize: copying file `config/lt~obsolete.m4'
| + ./configure --prefix=/home/autotest/jenkins/moab
| --with-hdf5=/homes/fathom/3rdparty/hdf5-1.8.8-par-mpich2.1.5-gcc
| --with-cgm=/home/autotest/jenkins/cgm --enable-mbcoupler
| --enable-mbcslam --with-netcdf=
| --with-pnetcdf=/homes/fathom/3rdparty/pnetcdf-mpich2-1.5
| --with-zoltan=ZOLTAN_PATH
| --with-parmetis=/homes/fathom/3rdparty/ParMETIS3_1/gcc
| checking build system type... x86_64-unknown-linux-gnu
| checking host system type... x86_64-unknown-linux-gnu
| checking target system type... x86_64-unknown-linux-gnu
| checking for a BSD-compatible install... /usr/bin/install -c
| checking whether build environment is sane... yes
| checking for a thread-safe mkdir -p... /bin/mkdir -p
| checking for gawk... gawk
| checking whether make sets $(MAKE)... yes
| checking for sed... sed
| checking for style of include used by make... GNU
| checking for gcc... gcc
| checking whether the C compiler works... yes
| checking for C compiler default output file name... a.out
| checking for suffix of executables...
| checking whether we are cross compiling... no
| checking for suffix of object files... o
| checking whether we are using the GNU C compiler... yes
| checking whether gcc accepts -g... yes
| checking for gcc option to accept ISO C89... none needed
| checking dependency style of gcc... gcc3
| checking how to run the C preprocessor... gcc -E
| checking for g++... g++
| checking whether we are using the GNU C++ compiler... yes
| checking whether g++ accepts -g... yes
| checking dependency style of g++... gcc3
| checking how to run the C++ preprocessor... g++ -E
| checking for gfortran... gfortran
| checking whether we are using the GNU Fortran compiler... yes
| checking whether gfortran accepts -g... yes
| checking for g77... no
| checking for xlf... no
| checking for f77... f77
| checking whether we are using the GNU Fortran 77 compiler... yes
| checking whether f77 accepts -g... yes
| checking whether ln -s works... yes
| checking whether make sets $(MAKE)... (cached) yes
| checking how to print strings... printf
| checking for a sed that does not truncate output... sed
| checking for grep that handles long lines and -e... /bin/grep
| checking for egrep... /bin/grep -E
| checking for fgrep... /bin/grep -F
| checking for ld used by gcc... /usr/bin/ld
| checking if the linker (/usr/bin/ld) is GNU ld... yes
| checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
| checking the name lister (/usr/bin/nm -B) interface... BSD nm
| checking the maximum length of command line arguments... 1572864
| checking whether the shell understands some XSI constructs... yes
| checking whether the shell understands "+="... yes
| checking how to convert x86_64-unknown-linux-gnu file names to
| x86_64-unknown-linux-gnu format... func_convert_file_noop
| checking how to convert x86_64-unknown-linux-gnu file names to
| toolchain format... func_convert_file_noop
| checking for /usr/bin/ld option to reload object files... -r
| checking for objdump... objdump
| checking how to recognize dependent libraries... pass_all
| checking for dlltool... no
| checking how to associate runtime and link libraries... printf %s\n
| checking for ar... ar
| checking for archiver @FILE support... @
| checking for strip... strip
| checking for ranlib... ranlib
| checking command to parse /usr/bin/nm -B output from gcc object... ok
| checking for sysroot... no
| checking for mt... mt
| checking if mt is a manifest tool... no
| checking for ANSI C header files... yes
| checking for sys/types.h... yes
| checking for sys/stat.h... yes
| checking for stdlib.h... yes
| checking for string.h... yes
| checking for memory.h... yes
| checking for strings.h... yes
| checking for inttypes.h... yes
| checking for stdint.h... yes
| checking for unistd.h... yes
| checking for dlfcn.h... yes
| checking for objdir... .libs
| checking if gcc supports -fno-rtti -fno-exceptions... no
| checking for gcc option to produce PIC... -fPIC -DPIC
| checking if gcc PIC flag -fPIC -DPIC works... yes
| checking if gcc static flag -static works... yes
| checking if gcc supports -c -o file.o... yes
| checking if gcc supports -c -o file.o... (cached) yes
| checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports
| shared libraries... yes
| checking dynamic linker characteristics... GNU/Linux ld.so
| checking how to hardcode library paths into programs... immediate
| checking whether stripping libraries is possible... yes
| checking if libtool supports shared libraries... yes
| checking whether to build shared libraries... no
| checking whether to build static libraries... yes
| checking how to run the C++ preprocessor... g++ -E
| checking for ld used by g++... /usr/bin/ld -m elf_x86_64
| checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
| checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports
| shared libraries... yes
| checking for g++ option to produce PIC... -fPIC -DPIC
| checking if g++ PIC flag -fPIC -DPIC works... yes
| checking if g++ static flag -static works... yes
| checking if g++ supports -c -o file.o... yes
| checking if g++ supports -c -o file.o... (cached) yes
| checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports
| shared libraries... yes
| checking dynamic linker characteristics... (cached) GNU/Linux ld.so
| checking how to hardcode library paths into programs... immediate
| checking if libtool supports shared libraries... yes
| checking whether to build shared libraries... no
| checking whether to build static libraries... yes
| checking for f77 option to produce PIC... -fPIC
| checking if f77 PIC flag -fPIC works... yes
| checking if f77 static flag -static works... yes
| checking if f77 supports -c -o file.o... yes
| checking if f77 supports -c -o file.o... (cached) yes
| checking whether the f77 linker (/usr/bin/ld -m elf_x86_64) supports
| shared libraries... yes
| checking dynamic linker characteristics... (cached) GNU/Linux ld.so
| checking how to hardcode library paths into programs... immediate
| checking if libtool supports shared libraries... yes
| checking whether to build shared libraries... no
| checking whether to build static libraries... yes
| checking for gfortran option to produce PIC... -fPIC
| checking if gfortran PIC flag -fPIC works... yes
| checking if gfortran static flag -static works... yes
| checking if gfortran supports -c -o file.o... yes
| checking if gfortran supports -c -o file.o... (cached) yes
| checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64)
| supports shared libraries... yes
| checking dynamic linker characteristics... (cached) GNU/Linux ld.so
| checking how to hardcode library paths into programs... immediate
| checking for known C compilers... GNU
| checking for known compiler/OS combinations... GNU:x86_64
| checking for known c++ compilers... GNU
| checking for known compiler/OS combinations... GNU:x86_64
| checking whether make supports nested variables... yes
| checking whether byte ordering is bigendian... no
| checking if platform is IBM BlueGene... no
| checking for gunzip... gunzip -c
| checking for gzip... (cached) gunzip -c
| checking for zcat... (cached) gunzip -c
| checking if C++ compiler supports template class specialization...
| yes
| checking if C++ compiler supports template function specialization...
| yes
| checking if g++ works... yes
| checking how to get verbose linking output from gfortran... -v
| checking for Fortran libraries of gfortran...
| -L/usr/lib/gcc/x86_64-linux-gnu/4.6
| -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu
| -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib
| -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu
| -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../..
| -lgfortran -lm -lquadmath
| checking for dummy main to link with Fortran libraries... none
| checking for Fortran name-mangling scheme... lower case, underscore,
| no extra underscore
| checking whether Fortran 77 supports Cray-style pointer... yes
| checking for Fortran 77 compiler flag for Cray-style pointer...
| -fcray-pointer
| checking whether Fortran 90 supports Cray-style pointer... yes
| checking for Fortran 90 compiler flag for Cray-style pointer...
| -fcray-pointer
| checking for vsnprintf... yes
| checking if std::vector has templatized insert method... yes
| checking if std::copy must be old SGI format... no
| checking for inttypes.h... (cached) yes
| checking for stdint.h... (cached) yes
| checking for sys/types.h... (cached) yes
| checking stddef.h usability... yes
| checking stddef.h presence... yes
| checking for stddef.h... yes
| checking for stdlib.h... (cached) yes
| checking size of void *... 8
| checking for size_t... yes
| checking for ptrdiff_t... yes
| checking size of EntityHandle... 8
| checking if iMesh support is to be built... yes
| checking if iGeom support is to be built... no
| configure: creating ./config.lt
| config.lt: creating libtool
| checking ieeefp.h usability... no
| checking ieeefp.h presence... no
| checking for ieeefp.h... no
| checking for C++ unordered_map... std::tr1
| checking for deflate in -lz... yes
| checking for SZ_Decompress in -lsz... no
| checking if HDF5 support is enabled... yes
| checking hdf5.h usability... no
| checking hdf5.h presence... no
| checking for hdf5.h... no
| checking for H5Fopen in -lhdf5... yes
| configure: error: HDF5 library not found or not usable.
| Build step 'Execute shell' marked build as failure
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