[MOAB-dev] buildbot failure in Fathom on moab-par

[Iulian Grindeanu]

Sorry, I missed one file by one minute :(

----- Original Message -----
> The Fathomatic has detected a failed build of moab-par on Fathom.
> Full details are available at:
> http://gnep.mcs.anl.gov:8010/builders/moab-par/builds/430
> 
> Buildbot URL: http://gnep.mcs.anl.gov:8010/
> 
> Buildslave for this Build: gnep
> 
> Build Reason: The Nightly scheduler named 'nightly' triggered this
> build
> Build Source Stamp: None
> Blamelist:
> 
> BUILD FAILED: failed compile
> 
> LOG EXCERPT:
> mpiCC -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel
> -I../src -I/home/jvporter/packages/hdf5-x64-parallel/include -isystem
> /home/jvporter/packages/hdf5-x64-parallel/include
> -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION
> -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE
> -DHDF5_PARALLEL -DNETCDF_FILE -I../src -I../src -I../src/parallel
> -I../src/parallel -DUNORDERED_MAP_NS=std::tr1
> -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic
> -Wno-long-long -O2 -DNDEBUG -MT propagate_tags.o -MD -MP -MF
> .deps/propagate_tags.Tpo -c -o propagate_tags.o propagate_tags.cpp
> mv -f .deps/propagate_tags.Tpo .deps/propagate_tags.Po
> /bin/sh ../libtool --tag=CXX --mode=link mpiCC -Wall -pipe -pedantic
> -Wno-long-long -O2 -DNDEBUG
> -L/home/jvporter/packages/hdf5-x64-parallel/lib
> -L/home/jvporter/packages/hdf5-x64-parallel/lib
> -L/home/jvporter/packages/hdf5-x64-parallel/lib -o mbtagprop parse.o
> propagate_tags.o ../src/libMOAB.la -lm
> mpiCC -Wall -pipe -pedantic -Wno-long-long -O2 -DNDEBUG -o mbtagprop
> parse.o propagate_tags.o
> -L/home/jvporter/packages/hdf5-x64-parallel/lib ../src/.libs/libMOAB.a
> -lnetcdf /homes/jvporter/lib/libhdf5.a -lz -lm
> mpiCC -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel
> -I../src -I/home/jvporter/packages/hdf5-x64-parallel/include -isystem
> /home/jvporter/packages/hdf5-x64-parallel/include
> -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION
> -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE
> -DHDF5_PARALLEL -DNETCDF_FILE -I../src -I../src -I../src/parallel
> -I../src/parallel -DUNORDERED_MAP_NS=std::tr1
> -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic
> -Wno-long-long -O2 -DNDEBUG -MT mbmem.o -MD -MP -MF .deps/mbmem.Tpo -c
> -o mbmem.o mbmem.cpp
> mv -f .deps/mbmem.Tpo .deps/mbmem.Po
> /bin/sh ../libtool --tag=CXX --mode=link mpiCC -Wall -pipe -pedantic
> -Wno-long-long -O2 -DNDEBUG
> -L/home/jvporter/packages/hdf5-x64-parallel/lib
> -L/home/jvporter/packages/hdf5-x64-parallel/lib
> -L/home/jvporter/packages/hdf5-x64-parallel/lib -o mbmem mbmem.o
> ../src/libMOAB.la -lm
> mpiCC -Wall -pipe -pedantic -Wno-long-long -O2 -DNDEBUG -o mbmem
> mbmem.o -L/home/jvporter/packages/hdf5-x64-parallel/lib
> ../src/.libs/libMOAB.a -lnetcdf /homes/jvporter/lib/libhdf5.a -lz -lm
> mpiCC -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel
> -I../src -I/home/jvporter/packages/hdf5-x64-parallel/include -isystem
> /home/jvporter/packages/hdf5-x64-parallel/include
> -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION
> -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE
> -DHDF5_PARALLEL -DNETCDF_FILE -I../src -I../src -I../src/parallel
> -I../src/parallel -DUNORDERED_MAP_NS=std::tr1
> -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic
> -Wno-long-long -O2 -DNDEBUG -MT SphereDecomp.o -MD -MP -MF
> .deps/SphereDecomp.Tpo -c -o SphereDecomp.o SphereDecomp.cpp
> mv -f .deps/SphereDecomp.Tpo .deps/SphereDecomp.Po
> mpiCC -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel
> -I../src -I/home/jvporter/packages/hdf5-x64-parallel/include -isystem
> /home/jvporter/packages/hdf5-x64-parallel/include
> -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION
> -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE
> -DHDF5_PARALLEL -DNETCDF_FILE -I../src -I../src -I../src/parallel
> -I../src/parallel -DUNORDERED_MAP_NS=std::tr1
> -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic
> -Wno-long-long -O2 -DNDEBUG -MT sphere_decomp.o -MD -MP -MF
> .deps/sphere_decomp.Tpo -c -o sphere_decomp.o sphere_decomp.cpp
> mv -f .deps/sphere_decomp.Tpo .deps/sphere_decomp.Po
> /bin/sh ../libtool --tag=CXX --mode=link mpiCC -Wall -pipe -pedantic
> -Wno-long-long -O2 -DNDEBUG
> -L/home/jvporter/packages/hdf5-x64-parallel/lib
> -L/home/jvporter/packages/hdf5-x64-parallel/lib
> -L/home/jvporter/packages/hdf5-x64-parallel/lib -o spheredecomp
> SphereDecomp.o sphere_decomp.o ../src/libMOAB.la -lm
> mpiCC -Wall -pipe -pedantic -Wno-long-long -O2 -DNDEBUG -o
> spheredecomp SphereDecomp.o sphere_decomp.o
> -L/home/jvporter/packages/hdf5-x64-parallel/lib ../src/.libs/libMOAB.a
> -lnetcdf /homes/jvporter/lib/libhdf5.a -lz -lm
> mpiCC -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel
> -I../src -I/home/jvporter/packages/hdf5-x64-parallel/include -isystem
> /home/jvporter/packages/hdf5-x64-parallel/include
> -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION
> -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE
> -DHDF5_PARALLEL -DNETCDF_FILE -I../src -I../src -I../src/parallel
> -I../src/parallel -DUNORDERED_MAP_NS=std::tr1
> -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic
> -Wno-long-long -O2 -DNDEBUG -MT surfplot.o -MD -MP -MF
> .deps/surfplot.Tpo -c -o surfplot.o surfplot.cpp
> mv -f .deps/surfplot.Tpo .deps/surfplot.Po
> /bin/sh ../libtool --tag=CXX --mode=link mpiCC -Wall -pipe -pedantic
> -Wno-long-long -O2 -DNDEBUG
> -L/home/jvporter/packages/hdf5-x64-parallel/lib
> -L/home/jvporter/packages/hdf5-x64-parallel/lib
> -L/home/jvporter/packages/hdf5-x64-parallel/lib -o mbsurfplot
> surfplot.o ../src/libMOAB.la -lm
> mpiCC -Wall -pipe -pedantic -Wno-long-long -O2 -DNDEBUG -o mbsurfplot
> surfplot.o -L/home/jvporter/packages/hdf5-x64-parallel/lib
> ../src/.libs/libMOAB.a -lnetcdf /homes/jvporter/lib/libhdf5.a -lz -lm
> mpiCC -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel
> -I../src -I/home/jvporter/packages/hdf5-x64-parallel/include -isystem
> /home/jvporter/packages/hdf5-x64-parallel/include
> -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION
> -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE
> -DHDF5_PARALLEL -DNETCDF_FILE -I../src -I../src -I../src/parallel
> -I../src/parallel -DUNORDERED_MAP_NS=std::tr1
> -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic
> -Wno-long-long -O2 -DNDEBUG -MT gsets.o -MD -MP -MF .deps/gsets.Tpo -c
> -o gsets.o gsets.cc
> mv -f .deps/gsets.Tpo .deps/gsets.Po
> /bin/sh ../libtool --tag=CXX --mode=link mpiCC -Wall -pipe -pedantic
> -Wno-long-long -O2 -DNDEBUG
> -L/home/jvporter/packages/hdf5-x64-parallel/lib
> -L/home/jvporter/packages/hdf5-x64-parallel/lib
> -L/home/jvporter/packages/hdf5-x64-parallel/lib -o mbgsets gsets.o
> ../src/libMOAB.la -lm
> mpiCC -Wall -pipe -pedantic -Wno-long-long -O2 -DNDEBUG -o mbgsets
> gsets.o -L/home/jvporter/packages/hdf5-x64-parallel/lib
> ../src/.libs/libMOAB.a -lnetcdf /homes/jvporter/lib/libhdf5.a -lz -lm
> mpiCC -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel
> -I../src -I/home/jvporter/packages/hdf5-x64-parallel/include -isystem
> /home/jvporter/packages/hdf5-x64-parallel/include
> -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION
> -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE
> -DHDF5_PARALLEL -DNETCDF_FILE -I../src -I../src -I../src/parallel
> -I../src/parallel -DUNORDERED_MAP_NS=std::tr1
> -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic
> -Wno-long-long -O2 -DNDEBUG -MT parread.o -MD -MP -MF
> .deps/parread.Tpo -c -o parread.o parread.cpp
> mv -f .deps/parread.Tpo .deps/parread.Po
> /bin/sh ../libtool --tag=CXX --mode=link mpiCC -Wall -pipe -pedantic
> -Wno-long-long -O2 -DNDEBUG
> -L/home/jvporter/packages/hdf5-x64-parallel/lib
> -L/home/jvporter/packages/hdf5-x64-parallel/lib
> -L/home/jvporter/packages/hdf5-x64-parallel/lib -o parread parread.o
> ../src/libMOAB.la -lm
> mpiCC -Wall -pipe -pedantic -Wno-long-long -O2 -DNDEBUG -o parread
> parread.o -L/home/jvporter/packages/hdf5-x64-parallel/lib
> ../src/.libs/libMOAB.a -lnetcdf /homes/jvporter/lib/libhdf5.a -lz -lm
> ...
> Making all in dagmc
> make[4]: Entering directory
> `/disk/itaps-buildslave/moab-par/build/tools/dagmc'
> /bin/sh ../../libtool --tag=CXX --mode=compile mpiCC -DHAVE_CONFIG_H
> -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src
> -I/home/jvporter/packages/hdf5-x64-parallel/include -isystem
> /home/jvporter/packages/hdf5-x64-parallel/include
> -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION
> -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE
> -DHDF5_PARALLEL -DNETCDF_FILE -I../../src -I../../src -I../../tools
> -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map
> -Wall -pipe -pedantic -Wno-long-long -O2 -DNDEBUG -MT DagMC.lo -MD -MP
> -MF .deps/DagMC.Tpo -c -o DagMC.lo DagMC.cpp
> mpiCC -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab
> -I../../src/parallel -I../../src
> -I/home/jvporter/packages/hdf5-x64-parallel/include -isystem
> /home/jvporter/packages/hdf5-x64-parallel/include
> -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION
> -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE
> -DHDF5_PARALLEL -DNETCDF_FILE -I../../src -I../../src -I../../tools
> -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map
> -Wall -pipe -pedantic -Wno-long-long -O2 -DNDEBUG -MT DagMC.lo -MD -MP
> -MF .deps/DagMC.Tpo -c DagMC.cpp -o DagMC.o
> mv -f .deps/DagMC.Tpo .deps/DagMC.Plo
> /bin/sh ../../libtool --tag=CXX --mode=link mpiCC -Wall -pipe
> -pedantic -Wno-long-long -O2 -DNDEBUG
> -L/home/jvporter/packages/hdf5-x64-parallel/lib
> -L/home/jvporter/packages/hdf5-x64-parallel/lib
> -L/home/jvporter/packages/hdf5-x64-parallel/lib -o libdagmc.la -rpath
> /usr/local/lib DagMC.lo -lm
> mkdir .libs
> ar cru .libs/libdagmc.a DagMC.o
> ranlib .libs/libdagmc.a
> creating libdagmc.la
> (cd .libs && rm -f libdagmc.la && ln -s ../libdagmc.la libdagmc.la)
> mpiCC -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab
> -I../../src/parallel -I../../src
> -I/home/jvporter/packages/hdf5-x64-parallel/include -isystem
> /home/jvporter/packages/hdf5-x64-parallel/include
> -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION
> -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE
> -DHDF5_PARALLEL -DNETCDF_FILE -I../../src -I../../src -I../../tools
> -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map
> -Wall -pipe -pedantic -Wno-long-long -O2 -DNDEBUG -MT dagmc_preproc.o
> -MD -MP -MF .deps/dagmc_preproc.Tpo -c -o dagmc_preproc.o
> dagmc_preproc.cpp
> mv -f .deps/dagmc_preproc.Tpo .deps/dagmc_preproc.Po
> /bin/sh ../../libtool --tag=CXX --mode=link mpiCC -Wall -pipe
> -pedantic -Wno-long-long -O2 -DNDEBUG
> -L/home/jvporter/packages/hdf5-x64-parallel/lib
> -L/home/jvporter/packages/hdf5-x64-parallel/lib
> -L/home/jvporter/packages/hdf5-x64-parallel/lib -o dagmc_preproc
> dagmc_preproc.o libdagmc.la ../../src/libMOAB.la ../libprogram_opt.la
> -lm
> mpiCC -Wall -pipe -pedantic -Wno-long-long -O2 -DNDEBUG -o
> dagmc_preproc dagmc_preproc.o
> -L/home/jvporter/packages/hdf5-x64-parallel/lib ./.libs/libdagmc.a
> ../../src/.libs/libMOAB.a -lnetcdf /homes/jvporter/lib/libhdf5.a -lz
> ../.libs/libprogram_opt.a -lm
> mpiCC -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab
> -I../../src/parallel -I../../src
> -I/home/jvporter/packages/hdf5-x64-parallel/include -isystem
> /home/jvporter/packages/hdf5-x64-parallel/include
> -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION
> -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE
> -DHDF5_PARALLEL -DNETCDF_FILE -I../../src -I../../src -I../../tools
> -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map
> -Wall -pipe -pedantic -Wno-long-long -O2 -DNDEBUG -MT
> quads_to_tris_driver.o -MD -MP -MF .deps/quads_to_tris_driver.Tpo -c
> -o quads_to_tris_driver.o quads_to_tris_driver.cpp
> mv -f .deps/quads_to_tris_driver.Tpo .deps/quads_to_tris_driver.Po
> mpiCC -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab
> -I../../src/parallel -I../../src
> -I/home/jvporter/packages/hdf5-x64-parallel/include -isystem
> /home/jvporter/packages/hdf5-x64-parallel/include
> -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION
> -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE
> -DHDF5_PARALLEL -DNETCDF_FILE -I../../src -I../../src -I../../tools
> -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map
> -Wall -pipe -pedantic -Wno-long-long -O2 -DNDEBUG -MT quads_to_tris.o
> -MD -MP -MF .deps/quads_to_tris.Tpo -c -o quads_to_tris.o
> quads_to_tris.cpp
> mv -f .deps/quads_to_tris.Tpo .deps/quads_to_tris.Po
> /bin/sh ../../libtool --tag=CXX --mode=link mpiCC -Wall -pipe
> -pedantic -Wno-long-long -O2 -DNDEBUG
> -L/home/jvporter/packages/hdf5-x64-parallel/lib
> -L/home/jvporter/packages/hdf5-x64-parallel/lib
> -L/home/jvporter/packages/hdf5-x64-parallel/lib -o quads_to_tris
> quads_to_tris_driver.o quads_to_tris.o ../../src/libMOAB.la -lm
> mpiCC -Wall -pipe -pedantic -Wno-long-long -O2 -DNDEBUG -o
> quads_to_tris quads_to_tris_driver.o quads_to_tris.o
> -L/home/jvporter/packages/hdf5-x64-parallel/lib
> ../../src/.libs/libMOAB.a -lnetcdf /homes/jvporter/lib/libhdf5.a -lz
> -lm
> ...
> Making all in mbfacetgeom
> make[4]: Entering directory
> `/disk/itaps-buildslave/moab-par/build/tools/mbfacetgeom'
> make[4]: *** No rule to make target `Makefile.am', needed by
> `Makefile.in'. Stop.
> 
> sincerely,
> -The Fathomatic