[MOAB-dev] build error on mcs machines

Iulian Grindeanu iulian at mcs.anl.gov
Mon Feb 21 15:53:06 CST 2011


Hello,
I was wondering if anybody has a good build on MCS machines now. 
I am getting errors I did not have last week, and I do not know the cause

It seems to be related to hdf5 library and dependency on netcdf. Hong Jun and I have the same problems, for parallel or serial builds. It is fine on my laptop, where I have only one hdf5 version.

Does anybody have a suggestion?

Iulian


Making all in .
make[3]: Entering directory `/nfs/mcs-homes129/iulian/serial/MOAB/tools'
  CXXLD  mbconvert
/usr/bin/ld: warning: libstdc++.so.5, needed by /home/fathom/3rdparty/cubit/Cubit64/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6
/home/fathom/3rdparty/netcdf/netcdf-4.0.1/serial/gcc/lib/libnetcdf.so: undefined reference to `H5DSget_num_scales'
/home/fathom/3rdparty/netcdf/netcdf-4.0.1/serial/gcc/lib/libnetcdf.so: undefined reference to `H5DSset_scale'
/home/fathom/3rdparty/netcdf/netcdf-4.0.1/serial/gcc/lib/libnetcdf.so: undefined reference to `H5DSget_scale_name'
/home/fathom/3rdparty/netcdf/netcdf-4.0.1/serial/gcc/lib/libnetcdf.so: undefined reference to `H5DSis_scale'
/home/fathom/3rdparty/netcdf/netcdf-4.0.1/serial/gcc/lib/libnetcdf.so: undefined reference to `H5DSdetach_scale'
/home/fathom/3rdparty/netcdf/netcdf-4.0.1/serial/gcc/lib/libnetcdf.so: undefined reference to `H5DSiterate_scales'
/home/fathom/3rdparty/netcdf/netcdf-4.0.1/serial/gcc/lib/libnetcdf.so: undefined reference to `H5DSattach_scale'


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