[MOAB-dev] buildbot failure in Fathom on moab-32bit

Tue Jan 26 00:14:32 CST 2010

The Fathomatic has detected a failed build of moab-32bit on Fathom.
Full details are available at:
 http://gnep.mcs.anl.gov:8010/builders/moab-32bit/builds/5

Buildbot URL: http://gnep.mcs.anl.gov:8010/

Buildslave for this Build: gnep

Build Reason: The Nightly scheduler named 'nightly' triggered this build
Build Source Stamp: None
Blamelist: 

BUILD FAILED: failed compile

LOG EXCERPT:
 c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DIS_BUILDING_MB -I. -I./parallel -I. -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=. -Wall -pipe -O2 -DNDEBUG -m32 -MT WriteGMV.lo -MD -MP -MF .deps/WriteGMV.Tpo -c WriteGMV.cpp -o WriteGMV.o
mv -f .deps/WriteGMV.Tpo .deps/WriteGMV.Plo
/bin/sh ./libtool --tag=CXX   --mode=compile c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DIS_BUILDING_MB -I. -I./parallel -I.    -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map  -DSRCDIR=.  -Wall -pipe -O2 -DNDEBUG -m32 -MT WriteGmsh.lo -MD -MP -MF .deps/WriteGmsh.Tpo -c -o WriteGmsh.lo WriteGmsh.cpp
 c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DIS_BUILDING_MB -I. -I./parallel -I. -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=. -Wall -pipe -O2 -DNDEBUG -m32 -MT WriteGmsh.lo -MD -MP -MF .deps/WriteGmsh.Tpo -c WriteGmsh.cpp -o WriteGmsh.o
mv -f .deps/WriteGmsh.Tpo .deps/WriteGmsh.Plo
/bin/sh ./libtool --tag=CXX   --mode=compile c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DIS_BUILDING_MB -I. -I./parallel -I.    -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map  -DSRCDIR=.  -Wall -pipe -O2 -DNDEBUG -m32 -MT WriteSTL.lo -MD -MP -MF .deps/WriteSTL.Tpo -c -o WriteSTL.lo WriteSTL.cpp
 c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DIS_BUILDING_MB -I. -I./parallel -I. -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=. -Wall -pipe -O2 -DNDEBUG -m32 -MT WriteSTL.lo -MD -MP -MF .deps/WriteSTL.Tpo -c WriteSTL.cpp -o WriteSTL.o
mv -f .deps/WriteSTL.Tpo .deps/WriteSTL.Plo
/bin/sh ./libtool --tag=CXX   --mode=compile c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DIS_BUILDING_MB -I. -I./parallel -I.    -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map  -DSRCDIR=.  -Wall -pipe -O2 -DNDEBUG -m32 -MT WriteTemplate.lo -MD -MP -MF .deps/WriteTemplate.Tpo -c -o WriteTemplate.lo WriteTemplate.cpp
 c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DIS_BUILDING_MB -I. -I./parallel -I. -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=. -Wall -pipe -O2 -DNDEBUG -m32 -MT WriteTemplate.lo -MD -MP -MF .deps/WriteTemplate.Tpo -c WriteTemplate.cpp -o WriteTemplate.o
mv -f .deps/WriteTemplate.Tpo .deps/WriteTemplate.Plo
/bin/sh ./libtool --tag=CXX   --mode=compile c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DIS_BUILDING_MB -I. -I./parallel -I.    -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map  -DSRCDIR=.  -Wall -pipe -O2 -DNDEBUG -m32 -MT WriteVtk.lo -MD -MP -MF .deps/WriteVtk.Tpo -c -o WriteVtk.lo WriteVtk.cpp
 c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DIS_BUILDING_MB -I. -I./parallel -I. -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=. -Wall -pipe -O2 -DNDEBUG -m32 -MT WriteVtk.lo -MD -MP -MF .deps/WriteVtk.Tpo -c WriteVtk.cpp -o WriteVtk.o
mv -f .deps/WriteVtk.Tpo .deps/WriteVtk.Plo
/bin/sh ./libtool --tag=CXX   --mode=link c++  -Wall -pipe -O2 -DNDEBUG -m32   -o libMOAB.la -rpath /usr/local/lib AEntityFactory.lo BitTagServer.lo DualTool.lo EntitySequence.lo ExoIIUtil.lo FileOptions.lo FileTokenizer.lo GeomTopoTool.lo GmshUtil.lo HigherOrderFactory.lo HomXform.lo MBAdaptiveKDTree.lo MBAffineXform.lo MBAlloc.lo MBAxisBox.lo MBBSPTree.lo MBCN.lo MBCartVect.lo MBMatrix3.lo MBCore.lo MBFactory.lo MBGeomUtil.lo MBMeshSet.lo MBOrientedBox.lo MBOrientedBoxTreeTool.lo BSPTreePoly.lo MBRange.lo MBRangeSeqIntersectIter.lo MBReadUtil.lo MBReaderWriterSet.lo MBSkinner.lo MBSysUtil.lo MBUtil.lo MBWriteUtil.lo MeshSetSequence.lo MeshTopoUtil.lo PolyElementSeq.lo ReadGmsh.lo ReadSms.lo ReadSTL.lo ReadVtk.lo ReadIDEAS.lo ReadMCNP5.lo ReadNASTRAN.lo ReadABAQUS.lo ReadTetGen.lo ScdElementData.lo ScdVertexData.lo SequenceData.lo SequenceManager.lo SparseTagSuperCollection.lo SparseTagCollection.lo StructuredElementSeq.lo SweptElementData.lo SweptElementSeq.lo SweptVertexDa
 ta.lo TagInfo.lo TagServer.lo Tqdcfr.lo TypeSequenceManager.lo UnstructuredElemSeq.lo VertexSequence.lo VtkUtil.lo WriteAns.lo WriteGMV.lo WriteGmsh.lo WriteSTL.lo WriteTemplate.lo WriteVtk.lo         -lm
mkdir .libs
ar cru .libs/libMOAB.a  AEntityFactory.o BitTagServer.o DualTool.o EntitySequence.o ExoIIUtil.o FileOptions.o FileTokenizer.o GeomTopoTool.o GmshUtil.o HigherOrderFactory.o HomXform.o MBAdaptiveKDTree.o MBAffineXform.o MBAlloc.o MBAxisBox.o MBBSPTree.o MBCN.o MBCartVect.o MBMatrix3.o MBCore.o MBFactory.o MBGeomUtil.o MBMeshSet.o MBOrientedBox.o MBOrientedBoxTreeTool.o BSPTreePoly.o MBRange.o MBRangeSeqIntersectIter.o MBReadUtil.o MBReaderWriterSet.o MBSkinner.o MBSysUtil.o MBUtil.o MBWriteUtil.o MeshSetSequence.o MeshTopoUtil.o PolyElementSeq.o ReadGmsh.o ReadSms.o ReadSTL.o ReadVtk.o ReadIDEAS.o ReadMCNP5.o ReadNASTRAN.o ReadABAQUS.o ReadTetGen.o ScdElementData.o ScdVertexData.o SequenceData.o SequenceManager.o SparseTagSuperCollection.o SparseTagCollection.o StructuredElementSeq.o SweptElementData.o SweptElementSeq.o SweptVertexData.o TagInfo.o TagServer.o Tqdcfr.o TypeSequenceManager.o UnstructuredElemSeq.o VertexSequence.o VtkUtil.o WriteAns.o WriteGMV.o WriteGmsh.o Write
 STL.o WriteTemplate.o WriteVtk.o
ranlib .libs/libMOAB.a
creating libMOAB.la
(cd .libs && rm -f libMOAB.la && ln -s ../libMOAB.la libMOAB.la)
./config.status --version | \
	  sed -e 's/.*options "\(.*\)"/\1/p' -e 'd' | \
	  sed -e "s/'[[:space:]]'/'\n'/g" >moab.config
cd . && /bin/sh ./config.status config.h
config.status: creating config.h
config.status: config.h is unchanged
 ...
Making all in test
make[3]: Entering directory `/nfs/mcs-homes15/jvporter/buildslave1/moab-32bit/build/test'
Making all in dual
make[4]: Entering directory `/nfs/mcs-homes15/jvporter/buildslave1/moab-32bit/build/test/dual'
make[4]: Nothing to be done for `all'.
 ...
Making all in h5file
make[4]: Entering directory `/nfs/mcs-homes15/jvporter/buildslave1/moab-32bit/build/test/h5file'
make[4]: Nothing to be done for `all'.
 ...
Making all in obb
make[4]: Entering directory `/nfs/mcs-homes15/jvporter/buildslave1/moab-32bit/build/test/obb'
make[4]: Nothing to be done for `all'.
 ...
Making all in perf
make[4]: Entering directory `/nfs/mcs-homes15/jvporter/buildslave1/moab-32bit/build/test/perf'
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -I. -I../.. -I../../parallel -I../.. -I../../mhdf/include -I../.. -I../../tools/iMesh -I../../tools/iMesh  -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map  -Wall -pipe -O2 -DNDEBUG -m32 -MT point_in_elem.o -MD -MP -MF .deps/point_in_elem.Tpo -c -o point_in_elem.o point_in_elem.cpp
mv -f .deps/point_in_elem.Tpo .deps/point_in_elem.Po
/bin/sh ../../libtool --tag=CXX   --mode=link c++  -Wall -pipe -O2 -DNDEBUG -m32   -o point_in_elem point_in_elem.o ../../libMOAB.la -lm
mkdir .libs
c++ -Wall -pipe -O2 -DNDEBUG -m32 -o point_in_elem point_in_elem.o  ../../.libs/libMOAB.a -lm  
/usr/bin/ld: skipping incompatible /usr/lib/gcc/x86_64-linux-gnu/4.2.4/libstdc++.so when searching for -lstdc++
/usr/bin/ld: skipping incompatible /usr/lib/gcc/x86_64-linux-gnu/4.2.4/libstdc++.a when searching for -lstdc++
/usr/bin/ld: skipping incompatible /usr/lib/gcc/x86_64-linux-gnu/4.2.4/libstdc++.so when searching for -lstdc++
/usr/bin/ld: skipping incompatible /usr/lib/gcc/x86_64-linux-gnu/4.2.4/libstdc++.a when searching for -lstdc++
/usr/bin/ld: cannot find -lstdc++
collect2: ld returned 1 exit status

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 -The Fathomatic