[MOAB-dev] Hi! This is Hong-Jun

[Hong-Jun Kim]

Hi! Folks.

When I install MOAB with HDF5 I have a problem to find libhdf5.so as follows.

-----------------------------------------------
> checking if HDF5 support is enabled... yes
> checking hdf5.h usability... yes
> checking hdf5.h presence... yes
> checking for hdf5.h... yes
> checking for H5Fopen in -lhdf5... no
> checking for H5Fopen in -lhdf5... no
> configure: WARNING: Could not find HDF5 library (-lhdf5)
> configure: WARNING: Support for native HDF5 file format disabled
> ------------------------------------------------------------------

I used "configure" for installing with following information.

1. configure line
  itaps:~/MOAB_DIR/moab-3.0.0> ./configure --with-hdf5=$HOME/5-1.8.2-linux-x86_64-shared --prefix=$HOME/MOAB

2. top-level hdf5 install directory
  ~/5-1.8.2-linux-x86_64-shared

3. status of libhdf5.so in my computer
 itaps:~/5-1.8.2-linux-x86_64-shared/lib> ls -l
   lrwxrwxrwx 1 hongjun collab      16 2009-05-06 16:00 libhdf5.so -> libhdf5.so.6.0.1
   -rwxr-xr-x 1 hongjun collab 2977705 2008-11-11 12:58 libhdf5.so.6.0.1

Can anybody give me an advice why MOAB "configure" can not find libhdf5.so?
I also attached my config.log file.
Thank you.

Hong-Jun

----- Original Message -----
From: "Tim Tautges" <tautges at mcs.anl.gov>
To: "Hong-Jun Kim" <hongjun at mcs.anl.gov>
Sent: Thursday, May 7, 2009 10:48:08 AM GMT -06:00 US/Canada Central
Subject: Re: Hi! This is Hong-Jun

Hmm, can you send the configure line you used and a listing of the 
top-level hdf5 install directory?  Also, send the output of config.log. 
  Finally, send these messages to moab-dev at mcs.anl.gov, so other moab 
people see them.

- tim

Hong-Jun Kim wrote:
> Dear Tim
> 
> I would like to ask a question about installing MOAB, if you didn't depart from Madison yet?
> When I use "configure" for MOAB, even though I put HDF5 directory path, I got warning signs as follows.
> I think HDF5 directory is assigned correctly, because it can find hdf5.h file, but I don't know why it can not find libhdf5.so in HDF5 lib directory.
> Can you give me an advice for me?
> Thank you and see you soon.
> 
> Hong-Jun
> -----------------------------------------------
> checking if HDF5 support is enabled... yes
> checking hdf5.h usability... yes
> checking hdf5.h presence... yes
> checking for hdf5.h... yes
> checking for H5Fopen in -lhdf5... no
> checking for H5Fopen in -lhdf5... no
> configure: WARNING: Could not find HDF5 library (-lhdf5)
> configure: WARNING: Support for native HDF5 file format disabled
> ------------------------------------------------------------------
> 
> ----- Original Message -----
> From: "Tim Tautges" <tautges at mcs.anl.gov>
> To: "Hong-Jun Kim" <hongjun at mcs.anl.gov>
> Sent: Wednesday, May 6, 2009 3:30:40 PM GMT -06:00 US/Canada Central
> Subject: Re: Hi! This is Hong-Jun
> 
> No, but you can now build cgm off of the cubit shared libraries, you 
> just need to point the configure script to it (using --with-cubit= 
> option).  On harley.mcs.anl.gov, cubit is in /sandbox/tautges/Cubit. 
> Or, you can grab /sandbox/tautges/cubit10.2.64bit.tar.gz and install it 
> on your desktop machine under your personal space.
> 
> - tim
> 
> Hong-Jun Kim wrote:
>> Dear Tim
>>
>> Is there ACIS library in MCS?
>> Thanks.
>>
>> Hong-Jun
>>
>> ----- Original Message -----
>> From: "Tim Tautges" <tautges at mcs.anl.gov>
>> To: "Hong-Jun Kim" <hongjun at mcs.anl.gov>
>> Sent: Tuesday, May 5, 2009 3:48:01 PM GMT -06:00 US/Canada Central
>> Subject: Re: Hi! This is Hong-Jun
>>
>> Welcome!  I will be down the day after tomorrow.  In the mean time, 
>> please try installing MOAB and CGM under your space on the machine; you 
>> might have to build your own hdf5, not sure if it's in the green build 
>> of the OS on your machine.  For instructions, see my ITAPS wiki (just 
>> google it).
>>
>> - tim
>>
>> Hong-Jun Kim wrote:
>>> Dear Tim
>>>
>>> I finished my 2 day long orientation today and finally my computer is set up correctly.
>>> It is my first e-mail sent from this computer.
>>>
>>> I remember you will visit here, argonne this week and I think we can talk about my work at that time.
>>> Otherwise, please let me know to talk to you by e-mail.
>>> Thank you.
>>>
>>> Hong-Jun
>>>
> 

-- 
================================================================
"You will keep in perfect peace him whose mind is
   steadfast, because he trusts in you."               Isaiah 26:3

              Tim Tautges            Argonne National Laboratory
          (tautges at mcs.anl.gov)      (telecommuting from UW-Madison)
          phone: (608) 263-8485      1500 Engineering Dr.
            fax: (608) 263-4499      Madison, WI 53706

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