This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by MOAB configure 3.0.0, which was generated by GNU Autoconf 2.61. Invocation command line was $ ./configure --with-hdf5=/homes/hongjun/5-1.8.2-linux-x86_64-shared --prefix=/homes/hongjun/MOAB ## --------- ## ## Platform. ## ## --------- ## hostname = itaps.mcs.anl.gov uname -m = x86_64 uname -r = 2.6.24-24-server uname -s = Linux uname -v = #1 SMP Wed Apr 15 15:41:09 UTC 2009 /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = unknown /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /bin PATH: /usr/bin PATH: /usr/sbin PATH: /usr/X11R6/bin PATH: /sbin PATH: /usr/local/bin PATH: /usr/local/sbin PATH: /mcs/bin PATH: /software/common/bin PATH: /soft/apps/bin PATH: /soft/gnu/bin PATH: /soft/com/bin PATH: /soft/adm/bin PATH: /homes/hongjun/bin/linux-Ubuntu_8.04-x86_64 PATH: /homes/hongjun/bin PATH: . ## ----------- ## ## Core tests. ## ## ----------- ## configure:2118: checking build system type configure:2136: result: x86_64-unknown-linux-gnu configure:2158: checking host system type configure:2173: result: x86_64-unknown-linux-gnu configure:2195: checking target system type configure:2210: result: x86_64-unknown-linux-gnu configure:2252: checking for a BSD-compatible install configure:2308: result: /usr/bin/install -c configure:2319: checking whether build environment is sane configure:2362: result: yes configure:2427: checking for gawk configure:2443: found /usr/bin/gawk configure:2454: result: gawk configure:2465: checking whether make sets $(MAKE) configure:2486: result: yes configure:2683: checking for style of include used by make configure:2711: result: GNU configure:2843: checking for cc configure:2859: found /usr/bin/cc configure:2870: result: cc configure:2906: checking for C compiler version configure:2913: cc --version >&5 cc (GCC) 4.2.4 (Ubuntu 4.2.4-1ubuntu3) Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:2916: $? = 0 configure:2923: cc -v >&5 Using built-in specs. Target: x86_64-linux-gnu Configured with: ../src/configure -v --enable-languages=c,c++,fortran,objc,obj-c++,treelang --prefix=/usr --enable-shared --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --enable-nls --with-gxx-include-dir=/usr/include/c++/4.2 --program-suffix=-4.2 --enable-clocale=gnu --enable-libstdcxx-debug --enable-objc-gc --enable-mpfr --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 4.2.4 (Ubuntu 4.2.4-1ubuntu3) configure:2926: $? = 0 configure:2933: cc -V >&5 cc: '-V' option must have argument configure:2936: $? = 1 configure:2959: checking for C compiler default output file name configure:2986: cc conftest.c >&5 configure:2989: $? = 0 configure:3027: result: a.out configure:3044: checking whether the C compiler works configure:3054: ./a.out configure:3057: $? = 0 configure:3074: result: yes configure:3081: checking whether we are cross compiling configure:3083: result: no configure:3086: checking for suffix of executables configure:3093: cc -o conftest conftest.c >&5 configure:3096: $? = 0 configure:3120: result: configure:3126: checking for suffix of object files configure:3152: cc -c conftest.c >&5 configure:3155: $? = 0 configure:3178: result: o configure:3182: checking whether we are using the GNU C compiler configure:3211: cc -c conftest.c >&5 configure:3217: $? = 0 configure:3234: result: yes configure:3239: checking whether cc accepts -g configure:3269: cc -c -g conftest.c >&5 configure:3275: $? = 0 configure:3374: result: yes configure:3391: checking for cc option to accept ISO C89 configure:3465: cc -c -g -O2 conftest.c >&5 configure:3471: $? = 0 configure:3494: result: none needed configure:3514: checking dependency style of cc configure:3604: result: gcc3 configure:3626: checking how to run the C preprocessor configure:3666: cc -E conftest.c configure:3672: $? = 0 configure:3703: cc -E conftest.c conftest.c:10:28: error: ac_nonexistent.h: No such file or directory configure:3709: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.0.0" | #define PACKAGE_STRING "MOAB 3.0.0" | #define PACKAGE_BUGREPORT "" | #define PACKAGE "moab" | #define VERSION "3.0.0" | /* end confdefs.h. */ | #include configure:3742: result: cc -E configure:3771: cc -E conftest.c configure:3777: $? = 0 configure:3808: cc -E conftest.c conftest.c:10:28: error: ac_nonexistent.h: No such file or directory configure:3814: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.0.0" | #define PACKAGE_STRING "MOAB 3.0.0" | #define PACKAGE_BUGREPORT "" | #define PACKAGE "moab" | #define VERSION "3.0.0" | /* end confdefs.h. */ | #include configure:3909: checking for CC configure:3939: result: no configure:3909: checking for aCC configure:3939: result: no configure:3909: checking for cxx configure:3939: result: no configure:3909: checking for xlC_r configure:3939: result: no configure:3909: checking for xlC configure:3939: result: no configure:3909: checking for c++ configure:3925: found /usr/bin/c++ configure:3936: result: c++ configure:3967: checking for C++ compiler version configure:3974: c++ --version >&5 c++ (GCC) 4.2.4 (Ubuntu 4.2.4-1ubuntu3) Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:3977: $? = 0 configure:3984: c++ -v >&5 Using built-in specs. Target: x86_64-linux-gnu Configured with: ../src/configure -v --enable-languages=c,c++,fortran,objc,obj-c++,treelang --prefix=/usr --enable-shared --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --enable-nls --with-gxx-include-dir=/usr/include/c++/4.2 --program-suffix=-4.2 --enable-clocale=gnu --enable-libstdcxx-debug --enable-objc-gc --enable-mpfr --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 4.2.4 (Ubuntu 4.2.4-1ubuntu3) configure:3987: $? = 0 configure:3994: c++ -V >&5 c++: '-V' option must have argument configure:3997: $? = 1 configure:4000: checking whether we are using the GNU C++ compiler configure:4029: c++ -c conftest.cpp >&5 configure:4035: $? = 0 configure:4052: result: yes configure:4057: checking whether c++ accepts -g configure:4087: c++ -c -g conftest.cpp >&5 configure:4093: $? = 0 configure:4192: result: yes configure:4217: checking dependency style of c++ configure:4307: result: gcc3 configure:4329: checking how to run the C++ preprocessor configure:4365: c++ -E conftest.cpp configure:4371: $? = 0 configure:4402: c++ -E conftest.cpp conftest.cpp:10:28: error: ac_nonexistent.h: No such file or directory configure:4408: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.0.0" | #define PACKAGE_STRING "MOAB 3.0.0" | #define PACKAGE_BUGREPORT "" | #define PACKAGE "moab" | #define VERSION "3.0.0" | /* end confdefs.h. */ | #include configure:4441: result: c++ -E configure:4470: c++ -E conftest.cpp configure:4476: $? = 0 configure:4507: c++ -E conftest.cpp conftest.cpp:10:28: error: ac_nonexistent.h: No such file or directory configure:4513: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.0.0" | #define PACKAGE_STRING "MOAB 3.0.0" | #define PACKAGE_BUGREPORT "" | #define PACKAGE "moab" | #define VERSION "3.0.0" | /* end confdefs.h. */ | #include configure:4558: checking for known C compilers configure:5366: result: GNU configure:5374: checking for known compiler/OS combinations configure:5422: result: GNU:x86_64 configure:5429: checking for known c++ compilers configure:6204: result: GNU configure:6212: checking for known compiler/OS combinations configure:6262: result: GNU:x86_64 configure:6383: checking whether ln -s works configure:6387: result: yes configure:6394: checking whether make sets $(MAKE) configure:6415: result: yes configure:6502: checking for gfortran configure:6518: found /usr/bin/gfortran configure:6529: result: gfortran configure:6559: checking for Fortran compiler version configure:6566: gfortran --version >&5 GNU Fortran (GCC) 4.2.4 (Ubuntu 4.2.4-1ubuntu3) Copyright (C) 2007 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING configure:6569: $? = 0 configure:6576: gfortran -v >&5 Using built-in specs. Target: x86_64-linux-gnu Configured with: ../src/configure -v --enable-languages=c,c++,fortran,objc,obj-c++,treelang --prefix=/usr --enable-shared --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --enable-nls --with-gxx-include-dir=/usr/include/c++/4.2 --program-suffix=-4.2 --enable-clocale=gnu --enable-libstdcxx-debug --enable-objc-gc --enable-mpfr --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 4.2.4 (Ubuntu 4.2.4-1ubuntu3) configure:6579: $? = 0 configure:6586: gfortran -V >&5 gfortran: '-V' option must have argument configure:6589: $? = 1 configure:6597: checking whether we are using the GNU Fortran compiler configure:6616: gfortran -c conftest.F >&5 configure:6622: $? = 0 configure:6639: result: yes configure:6645: checking whether gfortran accepts -g configure:6662: gfortran -c -g conftest.f >&5 configure:6668: $? = 0 configure:6684: result: yes configure:6756: checking for a sed that does not truncate output configure:6810: result: /bin/sed configure:6813: checking for grep that handles long lines and -e configure:6887: result: /bin/grep configure:6892: checking for egrep configure:6970: result: /bin/grep -E configure:6986: checking for ld used by cc configure:7053: result: /usr/bin/ld configure:7062: checking if the linker (/usr/bin/ld) is GNU ld configure:7077: result: yes configure:7082: checking for /usr/bin/ld option to reload object files configure:7089: result: -r configure:7107: checking for BSD-compatible nm configure:7156: result: /usr/bin/nm -B configure:7160: checking how to recognise dependent libraries configure:7336: result: pass_all configure:7423: cc -c -Wall -pipe -O2 -DNDEBUG conftest.c >&5 configure:7426: $? = 0 configure:7565: checking for ANSI C header files configure:7595: cc -c -Wall -pipe -O2 -DNDEBUG conftest.c >&5 configure:7601: $? = 0 configure:7700: cc -o conftest -Wall -pipe -O2 -DNDEBUG conftest.c -lm >&5 configure:7703: $? = 0 configure:7709: ./conftest configure:7712: $? = 0 configure:7729: result: yes configure:7753: checking for sys/types.h configure:7774: cc -c -Wall -pipe -O2 -DNDEBUG conftest.c >&5 configure:7780: $? = 0 configure:7796: result: yes configure:7753: checking for sys/stat.h configure:7774: cc -c -Wall -pipe -O2 -DNDEBUG conftest.c >&5 configure:7780: $? = 0 configure:7796: result: yes configure:7753: checking for stdlib.h configure:7774: cc -c -Wall -pipe -O2 -DNDEBUG conftest.c >&5 configure:7780: $? = 0 configure:7796: result: yes configure:7753: checking for string.h configure:7774: cc -c -Wall -pipe -O2 -DNDEBUG conftest.c >&5 configure:7780: $? = 0 configure:7796: result: yes configure:7753: checking for memory.h configure:7774: cc -c -Wall -pipe -O2 -DNDEBUG conftest.c >&5 configure:7780: $? = 0 configure:7796: result: yes configure:7753: checking for strings.h configure:7774: cc -c -Wall -pipe -O2 -DNDEBUG conftest.c >&5 configure:7780: $? = 0 configure:7796: result: yes configure:7753: checking for inttypes.h configure:7774: cc -c -Wall -pipe -O2 -DNDEBUG conftest.c >&5 configure:7780: $? = 0 configure:7796: result: yes configure:7753: checking for stdint.h configure:7774: cc -c -Wall -pipe -O2 -DNDEBUG conftest.c >&5 configure:7780: $? = 0 configure:7796: result: yes configure:7753: checking for unistd.h configure:7774: cc -c -Wall -pipe -O2 -DNDEBUG conftest.c >&5 configure:7780: $? = 0 configure:7796: result: yes configure:7823: checking dlfcn.h usability configure:7840: cc -c -Wall -pipe -O2 -DNDEBUG conftest.c >&5 configure:7846: $? = 0 configure:7860: result: yes configure:7864: checking dlfcn.h presence configure:7879: cc -E conftest.c configure:7885: $? = 0 configure:7899: result: yes configure:7927: checking for dlfcn.h configure:7935: result: yes configure:7958: checking how to run the C++ preprocessor configure:8070: result: c++ -E configure:8099: c++ -E conftest.cpp configure:8105: $? = 0 configure:8136: c++ -E conftest.cpp conftest.cpp:21:28: error: ac_nonexistent.h: No such file or directory configure:8142: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.0.0" | #define PACKAGE_STRING "MOAB 3.0.0" | #define PACKAGE_BUGREPORT "" | #define PACKAGE "moab" | #define VERSION "3.0.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | /* end confdefs.h. */ | #include configure:8234: checking for g77 configure:8250: found /usr/bin/g77 configure:8261: result: g77 configure:8291: checking for Fortran 77 compiler version configure:8298: g77 --version >&5 GNU Fortran (GCC) 3.4.6 (Ubuntu 3.4.6-6ubuntu5) Copyright (C) 2006 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING or type the command `info -f g77 Copying'. configure:8301: $? = 0 configure:8308: g77 -v >&5 Reading specs from /usr/lib/gcc/x86_64-linux-gnu/3.4.6/specs Configured with: ../src/configure -v --enable-languages=c,c++,f77,pascal --prefix=/usr --libexecdir=/usr/lib --with-gxx-include-dir=/usr/include/c++/3.4 --enable-shared --with-system-zlib --enable-nls --without-included-gettext --program-suffix=-3.4 --enable-__cxa_atexit --enable-clocale=gnu --enable-libstdcxx-debug x86_64-linux-gnu Thread model: posix gcc version 3.4.6 (Ubuntu 3.4.6-6ubuntu5) configure:8311: $? = 0 configure:8318: g77 -V >&5 g77: `-V' option must have argument configure:8321: $? = 1 configure:8329: checking whether we are using the GNU Fortran 77 compiler configure:8348: g77 -c conftest.F >&5 configure:8354: $? = 0 configure:8371: result: yes configure:8377: checking whether g77 accepts -g configure:8394: g77 -c -g conftest.f >&5 configure:8400: $? = 0 configure:8416: result: yes configure:8446: checking the maximum length of command line arguments configure:8555: result: 32768 configure:8566: checking command to parse /usr/bin/nm -B output from cc object configure:8671: cc -c -Wall -pipe -O2 -DNDEBUG conftest.c >&5 configure:8674: $? = 0 configure:8678: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' \> conftest.nm configure:8681: $? = 0 configure:8733: cc -o conftest -Wall -pipe -O2 -DNDEBUG conftest.c conftstm.o >&5 configure:8736: $? = 0 configure:8774: result: ok configure:8778: checking for objdir configure:8793: result: .libs configure:8885: checking for ar configure:8901: found /usr/bin/ar configure:8912: result: ar configure:8981: checking for ranlib configure:8997: found /usr/bin/ranlib configure:9008: result: ranlib configure:9077: checking for strip configure:9093: found /usr/bin/strip configure:9104: result: strip configure:9390: checking if cc supports -fno-rtti -fno-exceptions configure:9408: cc -c -Wall -pipe -O2 -DNDEBUG -fno-rtti -fno-exceptions conftest.c >&5 cc1: warning: command line option "-fno-rtti" is valid for C++/ObjC++ but not for C configure:9412: $? = 0 configure:9425: result: no configure:9440: checking for cc option to produce PIC configure:9650: result: -fPIC configure:9658: checking if cc PIC flag -fPIC works configure:9676: cc -c -Wall -pipe -O2 -DNDEBUG -fPIC -DPIC conftest.c >&5 configure:9680: $? = 0 configure:9693: result: yes configure:9721: checking if cc static flag -static works configure:9749: result: yes configure:9759: checking if cc supports -c -o file.o configure:9780: cc -c -Wall -pipe -O2 -DNDEBUG -o out/conftest2.o conftest.c >&5 configure:9784: $? = 0 configure:9806: result: yes configure:9832: checking whether the cc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:10787: result: yes configure:10854: checking dynamic linker characteristics configure:11430: result: GNU/Linux ld.so configure:11439: checking how to hardcode library paths into programs configure:11464: result: immediate configure:11478: checking whether stripping libraries is possible configure:11483: result: yes configure:12284: checking if libtool supports shared libraries configure:12286: result: yes configure:12289: checking whether to build shared libraries configure:12310: result: no configure:12313: checking whether to build static libraries configure:12317: result: yes configure:12409: creating libtool configure:12997: checking for ld used by c++ configure:13064: result: /usr/bin/ld -m elf_x86_64 configure:13073: checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld configure:13088: result: yes configure:13139: checking whether the c++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:14073: result: yes configure:14091: c++ -c -Wall -pipe -O2 -DNDEBUG conftest.cpp >&5 configure:14094: $? = 0 configure:14213: checking for c++ option to produce PIC configure:14487: result: -fPIC configure:14495: checking if c++ PIC flag -fPIC works configure:14513: c++ -c -Wall -pipe -O2 -DNDEBUG -fPIC -DPIC conftest.cpp >&5 configure:14517: $? = 0 configure:14530: result: yes configure:14558: checking if c++ static flag -static works configure:14586: result: yes configure:14596: checking if c++ supports -c -o file.o configure:14617: c++ -c -Wall -pipe -O2 -DNDEBUG -o out/conftest2.o conftest.cpp >&5 configure:14621: $? = 0 configure:14643: result: yes configure:14669: checking whether the c++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:14697: result: yes configure:14764: checking dynamic linker characteristics configure:15340: result: GNU/Linux ld.so configure:15349: checking how to hardcode library paths into programs configure:15374: result: immediate configure:15900: checking if libtool supports shared libraries configure:15902: result: yes configure:15905: checking whether to build shared libraries configure:15925: result: no configure:15928: checking whether to build static libraries configure:15932: result: yes configure:15942: checking for g77 option to produce PIC configure:16152: result: -fPIC configure:16160: checking if g77 PIC flag -fPIC works configure:16178: g77 -c -g -O2 -fPIC conftest.f >&5 configure:16182: $? = 0 configure:16195: result: yes configure:16223: checking if g77 static flag -static works configure:16251: result: yes configure:16261: checking if g77 supports -c -o file.o configure:16282: g77 -c -g -O2 -o out/conftest2.o conftest.f >&5 configure:16286: $? = 0 configure:16308: result: yes configure:16334: checking whether the g77 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:17269: result: yes configure:17336: checking dynamic linker characteristics configure:17912: result: GNU/Linux ld.so configure:17921: checking how to hardcode library paths into programs configure:17946: result: immediate configure:21495: checking for gunzip configure:21511: found /bin/gunzip configure:21522: result: gunzip -c configure:21532: checking for gzip configure:21559: result: gunzip -c configure:21569: checking for zcat configure:21596: result: gunzip -c configure:21684: checking for inttypes.h configure:21689: result: yes configure:21818: checking for stdint.h configure:21823: result: yes configure:21952: checking for sys/types.h configure:21957: result: yes configure:22095: checking stddef.h usability configure:22112: cc -c -Wall -pipe -O2 -DNDEBUG conftest.c >&5 configure:22118: $? = 0 configure:22132: result: yes configure:22136: checking stddef.h presence configure:22151: cc -E conftest.c configure:22157: $? = 0 configure:22171: result: yes configure:22199: checking for stddef.h configure:22206: result: yes configure:22220: checking for stdlib.h configure:22225: result: yes configure:22494: checking for size_t configure:22524: cc -c -Wall -pipe -O2 -DNDEBUG conftest.c >&5 configure:22530: $? = 0 configure:22545: result: yes configure:22559: checking for ptrdiff_t configure:22589: cc -c -Wall -pipe -O2 -DNDEBUG conftest.c >&5 configure:22595: $? = 0 configure:22610: result: yes configure:22680: checking for deflate in -lz configure:22715: cc -o conftest -Wall -pipe -O2 -DNDEBUG conftest.c -lz -lm >&5 configure:22721: $? = 0 configure:22739: result: yes configure:22776: checking for SZ_Decompress in -lsz configure:22811: cc -o conftest -Wall -pipe -O2 -DNDEBUG conftest.c -lsz -lm >&5 /usr/bin/ld: cannot find -lsz collect2: ld returned 1 exit status configure:22817: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.0.0" | #define PACKAGE_STRING "MOAB 3.0.0" | #define PACKAGE_BUGREPORT "" | #define PACKAGE "moab" | #define VERSION "3.0.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define MB_VERSION "3.0.0" | #define MB_VERSION_MAJOR 3 | #define MB_VERSION_MINOR 0 | #define MB_VERSION_PATCH 0 | #define MB_VERSION_STRING "MOAB 3.0.0" | #define MOAB_HAVE_INTTYPES_H | #define MOAB_HAVE_STDINT_H | #define MOAB_HAVE_SYS_TYPES_H | #define MOAB_HAVE_STDDEF_H | #define MOAB_HAVE_STDLIB_H | #define MOAB_HAVE_SIZE_T | #define MOAB_HAVE_PTRDIFF_T | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char SZ_Decompress (); | int | main () | { | return SZ_Decompress (); | ; | return 0; | } configure:22835: result: no configure:22873: checking if HDF5 support is enabled configure:22889: result: yes configure:23006: checking hdf5.h usability configure:23023: cc -c -Wall -pipe -O2 -DNDEBUG -I/homes/hongjun/5-1.8.2-linux-x86_64-shared/include conftest.c >&5 configure:23029: $? = 0 configure:23043: result: yes configure:23047: checking hdf5.h presence configure:23062: cc -E -I/homes/hongjun/5-1.8.2-linux-x86_64-shared/include conftest.c configure:23068: $? = 0 configure:23082: result: yes configure:23110: checking for hdf5.h configure:23118: result: yes configure:23136: checking for H5Fopen in -lhdf5 configure:23171: cc -o conftest -Wall -pipe -O2 -DNDEBUG conftest.c -lhdf5 -lm -L/homes/hongjun/5-1.8.2-linux-x86_64-shared/lib >&5 /usr/bin/ld: warning: libsz.so.2, needed by /homes/hongjun/5-1.8.2-linux-x86_64-shared/lib/libhdf5.so, not found (try using -rpath or -rpath-link) /homes/hongjun/5-1.8.2-linux-x86_64-shared/lib/libhdf5.so: undefined reference to `SZ_encoder_enabled' /homes/hongjun/5-1.8.2-linux-x86_64-shared/lib/libhdf5.so: undefined reference to `SZ_BufftoBuffCompress' /homes/hongjun/5-1.8.2-linux-x86_64-shared/lib/libhdf5.so: undefined reference to `SZ_BufftoBuffDecompress' collect2: ld returned 1 exit status configure:23177: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.0.0" | #define PACKAGE_STRING "MOAB 3.0.0" | #define PACKAGE_BUGREPORT "" | #define PACKAGE "moab" | #define VERSION "3.0.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define MB_VERSION "3.0.0" | #define MB_VERSION_MAJOR 3 | #define MB_VERSION_MINOR 0 | #define MB_VERSION_PATCH 0 | #define MB_VERSION_STRING "MOAB 3.0.0" | #define MOAB_HAVE_INTTYPES_H | #define MOAB_HAVE_STDINT_H | #define MOAB_HAVE_SYS_TYPES_H | #define MOAB_HAVE_STDDEF_H | #define MOAB_HAVE_STDLIB_H | #define MOAB_HAVE_SIZE_T | #define MOAB_HAVE_PTRDIFF_T | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char H5Fopen (); | int | main () | { | return H5Fopen (); | ; | return 0; | } configure:23195: result: no configure:23204: checking for H5Fopen in -lhdf5 configure:23239: cc -o conftest -Wall -pipe -O2 -DNDEBUG conftest.c -lhdf5 -lz -lm -L/homes/hongjun/5-1.8.2-linux-x86_64-shared/lib >&5 /usr/bin/ld: warning: libsz.so.2, needed by /homes/hongjun/5-1.8.2-linux-x86_64-shared/lib/libhdf5.so, not found (try using -rpath or -rpath-link) /homes/hongjun/5-1.8.2-linux-x86_64-shared/lib/libhdf5.so: undefined reference to `SZ_encoder_enabled' /homes/hongjun/5-1.8.2-linux-x86_64-shared/lib/libhdf5.so: undefined reference to `SZ_BufftoBuffCompress' /homes/hongjun/5-1.8.2-linux-x86_64-shared/lib/libhdf5.so: undefined reference to `SZ_BufftoBuffDecompress' collect2: ld returned 1 exit status configure:23245: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.0.0" | #define PACKAGE_STRING "MOAB 3.0.0" | #define PACKAGE_BUGREPORT "" | #define PACKAGE "moab" | #define VERSION "3.0.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define MB_VERSION "3.0.0" | #define MB_VERSION_MAJOR 3 | #define MB_VERSION_MINOR 0 | #define MB_VERSION_PATCH 0 | #define MB_VERSION_STRING "MOAB 3.0.0" | #define MOAB_HAVE_INTTYPES_H | #define MOAB_HAVE_STDINT_H | #define MOAB_HAVE_SYS_TYPES_H | #define MOAB_HAVE_STDDEF_H | #define MOAB_HAVE_STDLIB_H | #define MOAB_HAVE_SIZE_T | #define MOAB_HAVE_PTRDIFF_T | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char H5Fopen (); | int | main () | { | return H5Fopen (); | ; | return 0; | } configure:23263: result: no configure:23414: WARNING: Could not find HDF5 library (-lhdf5) configure:23429: WARNING: Support for native HDF5 file format disabled configure:23537: checking if NetCDF support is enabled configure:23554: result: yes configure:23583: checking strstream.h usability configure:23600: c++ -c -Wall -pipe -O2 -DNDEBUG conftest.cpp >&5 conftest.cpp:67:23: error: strstream.h: No such file or directory configure:23606: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.0.0" | #define PACKAGE_STRING "MOAB 3.0.0" | #define PACKAGE_BUGREPORT "" | #define PACKAGE "moab" | #define VERSION "3.0.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define MB_VERSION "3.0.0" | #define MB_VERSION_MAJOR 3 | #define MB_VERSION_MINOR 0 | #define MB_VERSION_PATCH 0 | #define MB_VERSION_STRING "MOAB 3.0.0" | #define MOAB_HAVE_INTTYPES_H | #define MOAB_HAVE_STDINT_H | #define MOAB_HAVE_SYS_TYPES_H | #define MOAB_HAVE_STDDEF_H | #define MOAB_HAVE_STDLIB_H | #define MOAB_HAVE_SIZE_T | #define MOAB_HAVE_PTRDIFF_T | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:23620: result: no configure:23624: checking strstream.h presence configure:23639: c++ -E conftest.cpp conftest.cpp:34:23: error: strstream.h: No such file or directory configure:23645: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.0.0" | #define PACKAGE_STRING "MOAB 3.0.0" | #define PACKAGE_BUGREPORT "" | #define PACKAGE "moab" | #define VERSION "3.0.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define MB_VERSION "3.0.0" | #define MB_VERSION_MAJOR 3 | #define MB_VERSION_MINOR 0 | #define MB_VERSION_PATCH 0 | #define MB_VERSION_STRING "MOAB 3.0.0" | #define MOAB_HAVE_INTTYPES_H | #define MOAB_HAVE_STDINT_H | #define MOAB_HAVE_SYS_TYPES_H | #define MOAB_HAVE_STDDEF_H | #define MOAB_HAVE_STDLIB_H | #define MOAB_HAVE_SIZE_T | #define MOAB_HAVE_PTRDIFF_T | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | #include configure:23659: result: no configure:23687: checking for strstream.h configure:23694: result: no configure:23712: checking sstream.h usability configure:23729: c++ -c -Wall -pipe -O2 -DNDEBUG conftest.cpp >&5 conftest.cpp:67:21: error: sstream.h: No such file or directory configure:23735: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.0.0" | #define PACKAGE_STRING "MOAB 3.0.0" | #define PACKAGE_BUGREPORT "" | #define PACKAGE "moab" | #define VERSION "3.0.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define MB_VERSION "3.0.0" | #define MB_VERSION_MAJOR 3 | #define MB_VERSION_MINOR 0 | #define MB_VERSION_PATCH 0 | #define MB_VERSION_STRING "MOAB 3.0.0" | #define MOAB_HAVE_INTTYPES_H | #define MOAB_HAVE_STDINT_H | #define MOAB_HAVE_SYS_TYPES_H | #define MOAB_HAVE_STDDEF_H | #define MOAB_HAVE_STDLIB_H | #define MOAB_HAVE_SIZE_T | #define MOAB_HAVE_PTRDIFF_T | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:23749: result: no configure:23753: checking sstream.h presence configure:23768: c++ -E conftest.cpp conftest.cpp:34:21: error: sstream.h: No such file or directory configure:23774: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.0.0" | #define PACKAGE_STRING "MOAB 3.0.0" | #define PACKAGE_BUGREPORT "" | #define PACKAGE "moab" | #define VERSION "3.0.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define MB_VERSION "3.0.0" | #define MB_VERSION_MAJOR 3 | #define MB_VERSION_MINOR 0 | #define MB_VERSION_PATCH 0 | #define MB_VERSION_STRING "MOAB 3.0.0" | #define MOAB_HAVE_INTTYPES_H | #define MOAB_HAVE_STDINT_H | #define MOAB_HAVE_SYS_TYPES_H | #define MOAB_HAVE_STDDEF_H | #define MOAB_HAVE_STDLIB_H | #define MOAB_HAVE_SIZE_T | #define MOAB_HAVE_PTRDIFF_T | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | #include configure:23788: result: no configure:23816: checking for sstream.h configure:23823: result: no configure:23841: checking strstream usability configure:23858: c++ -c -Wall -pipe -O2 -DNDEBUG conftest.cpp >&5 In file included from /usr/include/c++/4.2/backward/strstream:51, from conftest.cpp:67: /usr/include/c++/4.2/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header. Please consider using one of the 32 headers found in section 17.4.1.2 of the C++ standard. Examples include substituting the header for the header for C++ includes, or instead of the deprecated header . To disable this warning use -Wno-deprecated. configure:23864: $? = 0 configure:23878: result: yes configure:23882: checking strstream presence configure:23897: c++ -E conftest.cpp In file included from /usr/include/c++/4.2/backward/strstream:51, from conftest.cpp:34: /usr/include/c++/4.2/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header. Please consider using one of the 32 headers found in section 17.4.1.2 of the C++ standard. Examples include substituting the header for the header for C++ includes, or instead of the deprecated header . To disable this warning use -Wno-deprecated. configure:23903: $? = 0 configure:23917: result: yes configure:23945: checking for strstream configure:23952: result: yes configure:24149: checking netcdf.h usability configure:24166: cc -c -Wall -pipe -O2 -DNDEBUG -I/homes/hongjun/5-1.8.2-linux-x86_64-shared/include conftest.c >&5 configure:24172: $? = 0 configure:24186: result: yes configure:24190: checking netcdf.h presence configure:24205: cc -E -I/homes/hongjun/5-1.8.2-linux-x86_64-shared/include conftest.c configure:24211: $? = 0 configure:24225: result: yes configure:24253: checking for netcdf.h configure:24261: result: yes configure:24277: checking for netcdf.hh configure:24308: c++ -c -Wall -pipe -O2 -DNDEBUG -I/homes/hongjun/5-1.8.2-linux-x86_64-shared/include -I/homes/hongjun/5-1.8.2-linux-x86_64-shared/include conftest.cpp >&5 configure:24314: $? = 0 configure:24370: result: yes configure:24381: checking for netcdf_c++ library configure:24405: c++ -o conftest -Wall -pipe -O2 -DNDEBUG -I/homes/hongjun/5-1.8.2-linux-x86_64-shared/include -I/homes/hongjun/5-1.8.2-linux-x86_64-shared/include conftest.cpp -lm -lnetcdf_c++ -lnetcdf >&5 configure:24411: $? = 0 configure:24417: result: yes configure:24630: checking if mbconvert is to be built configure:24632: result: yes configure:24659: checking if hexmodops is to be built configure:24661: result: no configure:24688: checking if mbchaco is to be built configure:24690: result: no configure:24717: checking if mbperf is to be built configure:24719: result: no configure:24746: checking if qvdual is to be built configure:24748: result: no configure:24775: checking if mbsize is to be built configure:24777: result: no configure:24804: checking if mbskin is to be built configure:24806: result: no configure:24833: checking if mbtagprop is to be built configure:24835: result: no configure:24862: checking if spheredecomp is to be built configure:24864: result: no configure:24891: checking if mbsurfplot is to be built configure:24893: result: no configure:24920: checking if mbzoltan is to be built configure:24922: result: no configure:24949: checking if dagmc is to be built configure:24951: result: no configure:24975: checking how to get verbose linking output from gfortran configure:24991: gfortran -c -g -O2 conftest.f >&5 configure:24997: $? = 0 configure:25019: gfortran -o conftest -g -O2 -v conftest.f -lm -lnetcdf_c++ -lnetcdf Using built-in specs. Target: x86_64-linux-gnu Configured with: ../src/configure -v --enable-languages=c,c++,fortran,objc,obj-c++,treelang --prefix=/usr --enable-shared --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --enable-nls --with-gxx-include-dir=/usr/include/c++/4.2 --program-suffix=-4.2 --enable-clocale=gnu --enable-libstdcxx-debug --enable-objc-gc --enable-mpfr --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 4.2.4 (Ubuntu 4.2.4-1ubuntu3) /usr/lib/gcc/x86_64-linux-gnu/4.2.4/f951 conftest.f -ffixed-form -quiet -dumpbase conftest.f -mtune=generic -auxbase conftest -g -O2 -version -fstack-protector -I /usr/lib/gcc/x86_64-linux-gnu/4.2.4/finclude -o /tmp/cccI0CQT.s GNU F95 version 4.2.4 (Ubuntu 4.2.4-1ubuntu3) (x86_64-linux-gnu) compiled by GNU C version 4.2.4 (Ubuntu 4.2.4-1ubuntu3). GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 as --traditional-format -V -Qy -o /tmp/cc48vbrG.o /tmp/cccI0CQT.s GNU assembler version 2.18.0 (x86_64-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.18.0.20080103 /usr/lib/gcc/x86_64-linux-gnu/4.2.4/collect2 --eh-frame-hdr -m elf_x86_64 --hash-style=both -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o conftest /usr/lib/gcc/x86_64-linux-gnu/4.2.4/../../../../lib/crt1.o /usr/lib/gcc/x86_64-linux-gnu/4.2.4/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.2.4/crtbegin.o -L/usr/lib/gcc/x86_64-linux-gnu/4.2.4 -L/usr/lib/gcc/x86_64-linux-gnu/4.2.4 -L/usr/lib/gcc/x86_64-linux-gnu/4.2.4/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.2.4/../../.. /tmp/cc48vbrG.o -lgfortranbegin -lgfortran -lm -lnetcdf_c++ -lnetcdf -lgfortran -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/4.2.4/crtend.o /usr/lib/gcc/x86_64-linux-gnu/4.2.4/../../../../lib/crtn.o configure:25085: result: -v configure:25087: checking for Fortran libraries of gfortran configure:25110: gfortran -o conftest -g -O2 -v conftest.f -lm -lnetcdf_c++ -lnetcdf Using built-in specs. Target: x86_64-linux-gnu Configured with: ../src/configure -v --enable-languages=c,c++,fortran,objc,obj-c++,treelang --prefix=/usr --enable-shared --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --enable-nls --with-gxx-include-dir=/usr/include/c++/4.2 --program-suffix=-4.2 --enable-clocale=gnu --enable-libstdcxx-debug --enable-objc-gc --enable-mpfr --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 4.2.4 (Ubuntu 4.2.4-1ubuntu3) /usr/lib/gcc/x86_64-linux-gnu/4.2.4/f951 conftest.f -ffixed-form -quiet -dumpbase conftest.f -mtune=generic -auxbase conftest -g -O2 -version -fstack-protector -I /usr/lib/gcc/x86_64-linux-gnu/4.2.4/finclude -o /tmp/ccb8564j.s GNU F95 version 4.2.4 (Ubuntu 4.2.4-1ubuntu3) (x86_64-linux-gnu) compiled by GNU C version 4.2.4 (Ubuntu 4.2.4-1ubuntu3). GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 as --traditional-format -V -Qy -o /tmp/ccUwcGBs.o /tmp/ccb8564j.s GNU assembler version 2.18.0 (x86_64-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.18.0.20080103 /usr/lib/gcc/x86_64-linux-gnu/4.2.4/collect2 --eh-frame-hdr -m elf_x86_64 --hash-style=both -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o conftest /usr/lib/gcc/x86_64-linux-gnu/4.2.4/../../../../lib/crt1.o /usr/lib/gcc/x86_64-linux-gnu/4.2.4/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.2.4/crtbegin.o -L/usr/lib/gcc/x86_64-linux-gnu/4.2.4 -L/usr/lib/gcc/x86_64-linux-gnu/4.2.4 -L/usr/lib/gcc/x86_64-linux-gnu/4.2.4/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.2.4/../../.. /tmp/ccUwcGBs.o -lgfortranbegin -lgfortran -lm -lnetcdf_c++ -lnetcdf -lgfortran -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/4.2.4/crtend.o /usr/lib/gcc/x86_64-linux-gnu/4.2.4/../../../../lib/crtn.o configure:25284: result: -L/usr/lib/gcc/x86_64-linux-gnu/4.2.4 -L/usr/lib/gcc/x86_64-linux-gnu/4.2.4/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.2.4/../../.. -lgfortranbegin -lgfortran -lm -lnetcdf_c++ -lnetcdf configure:25300: checking for dummy main to link with Fortran libraries configure:25344: cc -o conftest -Wall -pipe -O2 -DNDEBUG conftest.c -lm -lnetcdf_c++ -lnetcdf -L/usr/lib/gcc/x86_64-linux-gnu/4.2.4 -L/usr/lib/gcc/x86_64-linux-gnu/4.2.4/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.2.4/../../.. -lgfortranbegin -lgfortran -lm -lnetcdf_c++ -lnetcdf >&5 configure:25350: $? = 0 configure:25431: result: none configure:25468: checking for Fortran name-mangling scheme configure:25487: gfortran -c -g -O2 conftest.f >&5 configure:25493: $? = 0 configure:25548: cc -o conftest -Wall -pipe -O2 -DNDEBUG conftest.c cfortran_test.o -lm -lnetcdf_c++ -lnetcdf -L/usr/lib/gcc/x86_64-linux-gnu/4.2.4 -L/usr/lib/gcc/x86_64-linux-gnu/4.2.4/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.2.4/../../.. -lgfortranbegin -lgfortran -lm -lnetcdf_c++ -lnetcdf >&5 /tmp/ccs0xr93.o: In function `main': conftest.c:(.text+0x7): undefined reference to `foobar' collect2: ld returned 1 exit status configure:25554: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.0.0" | #define PACKAGE_STRING "MOAB 3.0.0" | #define PACKAGE_BUGREPORT "" | #define PACKAGE "moab" | #define VERSION "3.0.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define MB_VERSION "3.0.0" | #define MB_VERSION_MAJOR 3 | #define MB_VERSION_MINOR 0 | #define MB_VERSION_PATCH 0 | #define MB_VERSION_STRING "MOAB 3.0.0" | #define MOAB_HAVE_INTTYPES_H | #define MOAB_HAVE_STDINT_H | #define MOAB_HAVE_SYS_TYPES_H | #define MOAB_HAVE_STDDEF_H | #define MOAB_HAVE_STDLIB_H | #define MOAB_HAVE_SIZE_T | #define MOAB_HAVE_PTRDIFF_T | #define HAVE_HDF5_H 1 | #define HAVE_NETCDF_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char foobar (); | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | return foobar (); | ; | return 0; | } configure:25548: cc -o conftest -Wall -pipe -O2 -DNDEBUG conftest.c cfortran_test.o -lm -lnetcdf_c++ -lnetcdf -L/usr/lib/gcc/x86_64-linux-gnu/4.2.4 -L/usr/lib/gcc/x86_64-linux-gnu/4.2.4/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.2.4/../../.. -lgfortranbegin -lgfortran -lm -lnetcdf_c++ -lnetcdf >&5 configure:25554: $? = 0 configure:25633: cc -o conftest -Wall -pipe -O2 -DNDEBUG conftest.c cfortran_test.o -lm -lnetcdf_c++ -lnetcdf -L/usr/lib/gcc/x86_64-linux-gnu/4.2.4 -L/usr/lib/gcc/x86_64-linux-gnu/4.2.4/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.2.4/../../.. -lgfortranbegin -lgfortran -lm -lnetcdf_c++ -lnetcdf >&5 configure:25639: $? = 0 configure:25696: result: lower case, underscore, no extra underscore configure:25811: checking if iMesh support is to be built configure:25813: result: yes configure:31672: creating ./config.status ## ---------------------- ## ## Running config.status. ## ## ---------------------- ## This file was extended by MOAB config.status 3.0.0, which was generated by GNU Autoconf 2.61. Invocation command line was CONFIG_FILES = CONFIG_HEADERS = CONFIG_LINKS = CONFIG_COMMANDS = $ ./config.status on itaps.mcs.anl.gov config.status:772: creating Makefile config.status:772: creating moab.make config.status:772: creating testdir.h config.status:772: creating mhdf/Makefile config.status:772: creating test/Makefile config.status:772: creating test/h5file/Makefile config.status:772: creating test/dual/Makefile config.status:772: creating test/obb/Makefile config.status:772: creating tools/Makefile config.status:772: creating tools/converter/Makefile config.status:772: creating tools/hexmodops/Makefile config.status:772: creating tools/iMesh/Makefile config.status:772: creating tools/iMesh/iMesh-Defs.inc config.status:772: creating tools/iMesh/SIDL/iMesh-SIDL-Defs.inc config.status:772: creating tools/iMesh/SIDL/Makefile config.status:772: creating tools/iMesh/SIDL/common.make config.status:772: creating tools/mbperf/Makefile config.status:772: creating tools/mbchaco/Makefile config.status:772: creating tools/mbzoltan/Config.moab config.status:772: creating tools/mbzoltan/Makefile config.status:772: creating tools/qvdual/Makefile config.status:772: creating tools/size/Makefile config.status:772: creating tools/skin/Makefile config.status:772: creating tools/tagprop/Makefile config.status:772: creating tools/spheredecomp/Makefile config.status:772: creating tools/surfplot/Makefile config.status:772: creating tools/dagmc/Makefile config.status:772: creating tools/dagmc/dagmc.make config.status:772: creating doc/Makefile config.status:772: creating doxygen/Makefile config.status:772: creating config.h config.status:1009: config.h is unchanged config.status:772: creating MBVersion.h config.status:1009: MBVersion.h is unchanged config.status:772: creating MBEntityHandle.h config.status:1009: MBEntityHandle.h is unchanged config.status:772: creating tools/iMesh/iBase_FCDefs.h config.status:1009: tools/iMesh/iBase_FCDefs.h is unchanged config.status:1055: executing depfiles commands configure:33049: result: C: cc -Wall -pipe -O2 -DNDEBUG configure:33051: result: C++: c++ -Wall -pipe -O2 -DNDEBUG configure:33078: WARNING: ************************************************************************* * MOAB has been compiled w/out the HDF5 library. * Support for native file format disabled! ************************************************************************* ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-unknown-linux-gnu ac_cv_c_compiler_gnu=yes ac_cv_cxx_compiler_gnu=yes ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set= ac_cv_env_CFLAGS_value= ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_F77_set= ac_cv_env_F77_value= ac_cv_env_FCFLAGS_set= ac_cv_env_FCFLAGS_value= ac_cv_env_FC_set= ac_cv_env_FC_value= ac_cv_env_FFLAGS_set= ac_cv_env_FFLAGS_value= ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_QTDIR_set= ac_cv_env_QTDIR_value= ac_cv_env_XMKMF_set= ac_cv_env_XMKMF_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_f77_compiler_gnu=yes ac_cv_fc_compiler_gnu=yes ac_cv_fc_dummy_main=none ac_cv_fc_libs=' -L/usr/lib/gcc/x86_64-linux-gnu/4.2.4 -L/usr/lib/gcc/x86_64-linux-gnu/4.2.4/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.2.4/../../.. -lgfortranbegin -lgfortran -lm -lnetcdf_c++ -lnetcdf' ac_cv_fc_mangling='lower case, underscore, no extra underscore' ac_cv_fortran_dummy_main=none ac_cv_header_dlfcn_h=yes ac_cv_header_hdf5_h=yes ac_cv_header_inttypes_h=yes ac_cv_header_memory_h=yes ac_cv_header_netcdf_h=yes ac_cv_header_sstream_h=no ac_cv_header_stdc=yes ac_cv_header_stddef_h=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_strstream=yes ac_cv_header_strstream_h=no ac_cv_header_sys_stat_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_unistd_h=yes ac_cv_host=x86_64-unknown-linux-gnu ac_cv_lib_hdf5_H5Fopen=no ac_cv_lib_sz_SZ_Decompress=no ac_cv_lib_z_deflate=yes ac_cv_objext=o ac_cv_path_EGREP='/bin/grep -E' ac_cv_path_GREP=/bin/grep ac_cv_path_install='/usr/bin/install -c' ac_cv_prog_AWK=gawk ac_cv_prog_CPP='cc -E' ac_cv_prog_CXXCPP='c++ -E' ac_cv_prog_ZCAT='gunzip -c' ac_cv_prog_ac_ct_AR=ar ac_cv_prog_ac_ct_CC=cc ac_cv_prog_ac_ct_CXX=c++ ac_cv_prog_ac_ct_F77=g77 ac_cv_prog_ac_ct_FC=gfortran ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_ac_ct_STRIP=strip ac_cv_prog_cc_c89= ac_cv_prog_cc_g=yes ac_cv_prog_cxx_g=yes ac_cv_prog_f77_g=yes ac_cv_prog_fc_g=yes ac_cv_prog_fc_v=-v ac_cv_prog_make_make_set=yes ac_cv_target=x86_64-unknown-linux-gnu ac_cv_type_ptrdiff_t=yes ac_cv_type_size_t=yes am_cv_CC_dependencies_compiler_type=gcc3 am_cv_CXX_dependencies_compiler_type=gcc3 lt_cv_deplibs_check_method=pass_all lt_cv_file_magic_cmd='$MAGIC_CMD' lt_cv_file_magic_test_file= lt_cv_ld_reload_flag=-r lt_cv_objdir=.libs lt_cv_path_LD=/usr/bin/ld lt_cv_path_LDCXX='/usr/bin/ld -m elf_x86_64' lt_cv_path_NM='/usr/bin/nm -B' lt_cv_path_SED=/bin/sed lt_cv_prog_compiler_c_o=yes lt_cv_prog_compiler_c_o_CXX=yes lt_cv_prog_compiler_c_o_F77=yes lt_cv_prog_compiler_rtti_exceptions=no lt_cv_prog_gnu_ld=yes lt_cv_prog_gnu_ldcxx=yes lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\''' lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (lt_ptr) 0},/p'\'' -e '\''s/^[BCDEGRST] \([^ ]*\) \([^ ]*\)$/ {"\2", (lt_ptr) \&\2},/p'\''' lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^. .* \(.*\)$/extern int \1;/p'\''' lt_cv_sys_max_cmd_len=32768 lt_lt_cv_prog_compiler_c_o='"yes"' lt_lt_cv_prog_compiler_c_o_CXX='"yes"' lt_lt_cv_prog_compiler_c_o_F77='"yes"' lt_lt_cv_sys_global_symbol_pipe='"sed -n -e '\''s/^.*[ ]\\([ABCDGIRSTW][ABCDGIRSTW]*\\)[ ][ ]*\\([_A-Za-z][_A-Za-z0-9]*\\)\$/\\1 \\2 \\2/p'\''"' lt_lt_cv_sys_global_symbol_to_c_name_address='"sed -n -e '\''s/^: \\([^ ]*\\) \$/ {\\\"\\1\\\", (lt_ptr) 0},/p'\'' -e '\''s/^[BCDEGRST] \\([^ ]*\\) \\([^ ]*\\)\$/ {\"\\2\", (lt_ptr) \\&\\2},/p'\''"' lt_lt_cv_sys_global_symbol_to_cdecl='"sed -n -e '\''s/^. .* \\(.*\\)\$/extern int \\1;/p'\''"' ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /homes/hongjun/MOAB_DIR/moab-3.0.0/missing --run aclocal-1.9' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='${SHELL} /homes/hongjun/MOAB_DIR/moab-3.0.0/missing --run tar' AR='ar' AUTOCONF='${SHELL} /homes/hongjun/MOAB_DIR/moab-3.0.0/missing --run autoconf' AUTOHEADER='${SHELL} /homes/hongjun/MOAB_DIR/moab-3.0.0/missing --run autoheader' AUTOMAKE='${SHELL} /homes/hongjun/MOAB_DIR/moab-3.0.0/missing --run automake-1.9' AWK='gawk' BABEL_DIR='' CC='cc' CCDEPMODE='depmode=gcc3' CFLAGS=' -Wall -pipe -O2 -DNDEBUG' CGM_CONFIG_OPTIONS='' CGM_DIR='' CHACO_INCLUDES='' CHACO_LIBS='' CPP='cc -E' CPPFLAGS='' CXX='c++' CXXCPP='c++ -E' CXXDEPMODE='depmode=gcc3' CXXFLAGS=' -Wall -pipe -O2 -DNDEBUG' CYGPATH_W='echo' DAGMC_CONFIG_OPTIONS='' DEFINES=' -DNETCDF_FILE -DNETCDF_FILE' DEFS='-DHAVE_CONFIG_H' DEPDIR='.deps' DISTCHECK_CONFIGURE_FLAGS=' --with-hdf5="/homes/hongjun/5-1.8.2-linux-x86_64-shared"' DOXYGEN='' ECHO='echo' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/bin/grep -E' ENABLE_DOXYGEN_FALSE='' ENABLE_DOXYGEN_TRUE='#' ENABLE_dagmc_FALSE='' ENABLE_dagmc_TRUE='#' ENABLE_hexmodops_FALSE='' ENABLE_hexmodops_TRUE='#' ENABLE_imesh_FALSE='#' ENABLE_imesh_TRUE='' ENABLE_mbchaco_FALSE='' ENABLE_mbchaco_TRUE='#' ENABLE_mbconvert_FALSE='#' ENABLE_mbconvert_TRUE='' ENABLE_mbperf_FALSE='' ENABLE_mbperf_TRUE='#' ENABLE_mbsize_FALSE='' ENABLE_mbsize_TRUE='#' ENABLE_mbskin_FALSE='' ENABLE_mbskin_TRUE='#' ENABLE_mbsurfplot_FALSE='' ENABLE_mbsurfplot_TRUE='#' ENABLE_mbtagprop_FALSE='' ENABLE_mbtagprop_TRUE='#' ENABLE_mbzoltan_FALSE='' ENABLE_mbzoltan_TRUE='#' ENABLE_qvdual_FALSE='' ENABLE_qvdual_TRUE='#' ENABLE_spheredecomp_FALSE='' ENABLE_spheredecomp_TRUE='#' EXEEXT='' F77='g77' FC='gfortran' FCFLAGS='-g -O2' FCLIBS=' -L/usr/lib/gcc/x86_64-linux-gnu/4.2.4 -L/usr/lib/gcc/x86_64-linux-gnu/4.2.4/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.2.4/../../.. -lgfortranbegin -lgfortran -lm -lnetcdf_c++ -lnetcdf' FFLAGS='-g -O2' GREP='/bin/grep' HAVE_CGM_FALSE='' HAVE_CGM_TRUE='#' HAVE_ZCAT_FALSE='' HAVE_ZCAT_TRUE='#' HDF5_FILE_FALSE='' HDF5_FILE_TRUE='#' INCLUDES=' -I/homes/hongjun/5-1.8.2-linux-x86_64-shared/include' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='${SHELL} $(install_sh) -c -s' LDFLAGS='' LIBOBJS='' LIBS='-lm -lnetcdf_c++ -lnetcdf' LIBTOOL='$(SHELL) $(top_builddir)/libtool' LN_S='ln -s' LTLIBOBJS='' MAKEINFO='${SHELL} /homes/hongjun/MOAB_DIR/moab-3.0.0/missing --run makeinfo' MOAB_CXX_LDFLAGS='-L/usr/lib/gcc/x86_64-linux-gnu/4.2.4 -L/usr/lib/gcc/x86_64-linux-gnu/4.2.4 -L/usr/lib/gcc/x86_64-linux-gnu/4.2.4/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.2.4/../../..' MOAB_CXX_LIBS='-lstdc++ -lm -lgcc_s -lc -lgcc_s' MOC='' NETCDF_FILE_FALSE='#' NETCDF_FILE_TRUE='' OBJEXT='o' PACKAGE='moab' PACKAGE_BUGREPORT='' PACKAGE_NAME='MOAB' PACKAGE_STRING='MOAB 3.0.0' PACKAGE_TARNAME='moab' PACKAGE_VERSION='3.0.0' PARALLEL_FALSE='' PARALLEL_HDF5_FALSE='' PARALLEL_HDF5_TRUE='#' PARALLEL_TRUE='#' PATH_SEPARATOR=':' QTDIR='' QVDUAL_INCLUDES='' QVDUAL_LIBS='' RANLIB='ranlib' SET_MAKE='' SHELL='/bin/sh' STRIP='strip' UIC='' USE_BABEL='no' USE_BABEL_FALSE='' USE_BABEL_TRUE='#' USE_MPI_FALSE='' USE_MPI_TRUE='#' VERSION='3.0.0' VTK_LIB_DIR='' XMKMF='' X_CFLAGS='' X_EXTRA_LIBS='' X_LIBS='' X_PRE_LIBS='' ZCAT='gunzip -c' ZOLTAN_ARCH='' ZOLTAN_DIR='' ZOLTAN_INCLUDES='' ZOLTAN_LIBS='' ac_ct_CC='cc' ac_ct_CXX='c++' ac_ct_F77='g77' ac_ct_FC='gfortran' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' am__fastdepCXX_FALSE='#' am__fastdepCXX_TRUE='' am__include='include' am__leading_dot='.' am__quote='' am__tar='${AMTAR} chof - "$$tardir"' am__untar='${AMTAR} xf -' bindir='${exec_prefix}/bin' build='x86_64-unknown-linux-gnu' build_alias='' build_cpu='x86_64' build_os='linux-gnu' build_vendor='unknown' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='${prefix}' host='x86_64-unknown-linux-gnu' host_alias='' host_cpu='x86_64' host_os='linux-gnu' host_vendor='unknown' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='/homes/hongjun/MOAB_DIR/moab-3.0.0/install-sh' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' mkdir_p='mkdir -p --' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/homes/hongjun/MOAB' program_transform_name='s,x,x,' psdir='${docdir}' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' sysconfdir='${prefix}/etc' target='x86_64-unknown-linux-gnu' target_alias='' target_cpu='x86_64' target_os='linux-gnu' target_vendor='unknown' ## ----------- ## ## confdefs.h. ## ## ----------- ## #define PACKAGE_NAME "MOAB" #define PACKAGE_TARNAME "moab" #define PACKAGE_VERSION "3.0.0" #define PACKAGE_STRING "MOAB 3.0.0" #define PACKAGE_BUGREPORT "" #define PACKAGE "moab" #define VERSION "3.0.0" #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define HAVE_DLFCN_H 1 #define MB_VERSION "3.0.0" #define MB_VERSION_MAJOR 3 #define MB_VERSION_MINOR 0 #define MB_VERSION_PATCH 0 #define MB_VERSION_STRING "MOAB 3.0.0" #define MOAB_HAVE_INTTYPES_H #define MOAB_HAVE_STDINT_H #define MOAB_HAVE_SYS_TYPES_H #define MOAB_HAVE_STDDEF_H #define MOAB_HAVE_STDLIB_H #define MOAB_HAVE_SIZE_T #define MOAB_HAVE_PTRDIFF_T #define HAVE_HDF5_H 1 #define HAVE_NETCDF_H 1 #define FC_FUNC(name,NAME) name ## _ #define FC_FUNC_(name,NAME) name ## _ configure: exit 0