[MOAB-dev] MOAB distcheck failed.
Nightly Test
kraftche at cae.wisc.edu
Tue Mar 31 02:03:24 CDT 2009
{ test ! -d moab-3.99 || { find moab-3.99 -type d ! -perm -200 -exec chmod u+w {} ';' && rm -fr moab-3.99; }; }
test -d moab-3.99 || mkdir moab-3.99
list='mhdf parallel . test tools doc doxygen'; for subdir in $list; do \
if test "$subdir" = .; then :; else \
test -d "moab-3.99/$subdir" \
|| /bin/mkdir -p "moab-3.99/$subdir" \
|| exit 1; \
distdir=`CDPATH="${ZSH_VERSION+.}:" && cd moab-3.99 && pwd`; \
top_distdir=`CDPATH="${ZSH_VERSION+.}:" && cd moab-3.99 && pwd`; \
(cd $subdir && \
make \
top_distdir="$top_distdir" \
distdir="$distdir/$subdir" \
am__remove_distdir=: \
am__skip_length_check=: \
distdir) \
|| exit 1; \
fi; \
done
make[1]: Entering directory `/home/jason/moab/test/dist/mhdf'
make[1]: Leaving directory `/home/jason/moab/test/dist/mhdf'
make[1]: Entering directory `/home/jason/moab/test/dist/parallel'
list=''; for subdir in $list; do \
if test "$subdir" = .; then :; else \
test -d "/home/jason/moab/test/dist/moab-3.99/parallel/$subdir" \
|| /bin/mkdir -p "/home/jason/moab/test/dist/moab-3.99/parallel/$subdir" \
|| exit 1; \
distdir=`CDPATH="${ZSH_VERSION+.}:" && cd /home/jason/moab/test/dist/moab-3.99/parallel && pwd`; \
top_distdir=`CDPATH="${ZSH_VERSION+.}:" && cd /home/jason/moab/test/dist/moab-3.99 && pwd`; \
(cd $subdir && \
make \
top_distdir="$top_distdir" \
distdir="$distdir/$subdir" \
am__remove_distdir=: \
am__skip_length_check=: \
distdir) \
|| exit 1; \
fi; \
done
make[1]: Leaving directory `/home/jason/moab/test/dist/parallel'
make[1]: Entering directory `/home/jason/moab/test/dist/test'
list='dual h5file obb perf'; for subdir in $list; do \
if test "$subdir" = .; then :; else \
test -d "/home/jason/moab/test/dist/moab-3.99/test/$subdir" \
|| /bin/mkdir -p "/home/jason/moab/test/dist/moab-3.99/test/$subdir" \
|| exit 1; \
distdir=`CDPATH="${ZSH_VERSION+.}:" && cd /home/jason/moab/test/dist/moab-3.99/test && pwd`; \
top_distdir=`CDPATH="${ZSH_VERSION+.}:" && cd /home/jason/moab/test/dist/moab-3.99 && pwd`; \
(cd $subdir && \
make \
top_distdir="$top_distdir" \
distdir="$distdir/$subdir" \
am__remove_distdir=: \
am__skip_length_check=: \
distdir) \
|| exit 1; \
fi; \
done
make[2]: Entering directory `/home/jason/moab/test/dist/test/dual'
make[2]: Leaving directory `/home/jason/moab/test/dist/test/dual'
make[2]: Entering directory `/home/jason/moab/test/dist/test/h5file'
make[2]: Leaving directory `/home/jason/moab/test/dist/test/h5file'
make[2]: Entering directory `/home/jason/moab/test/dist/test/obb'
make[2]: Leaving directory `/home/jason/moab/test/dist/test/obb'
make[2]: Entering directory `/home/jason/moab/test/dist/test/perf'
make[2]: Leaving directory `/home/jason/moab/test/dist/test/perf'
make[1]: Leaving directory `/home/jason/moab/test/dist/test'
make[1]: Entering directory `/home/jason/moab/test/dist/tools'
list='iMesh mbchaco mbcoupler mbzoltan mbperf mcnpmit qvdual dagmc'; for subdir in $list; do \
if test "$subdir" = .; then :; else \
test -d "/home/jason/moab/test/dist/moab-3.99/tools/$subdir" \
|| /bin/mkdir -p "/home/jason/moab/test/dist/moab-3.99/tools/$subdir" \
|| exit 1; \
distdir=`CDPATH="${ZSH_VERSION+.}:" && cd /home/jason/moab/test/dist/moab-3.99/tools && pwd`; \
top_distdir=`CDPATH="${ZSH_VERSION+.}:" && cd /home/jason/moab/test/dist/moab-3.99 && pwd`; \
(cd $subdir && \
make \
top_distdir="$top_distdir" \
distdir="$distdir/$subdir" \
am__remove_distdir=: \
am__skip_length_check=: \
distdir) \
|| exit 1; \
fi; \
done
make[2]: Entering directory `/home/jason/moab/test/dist/tools/iMesh'
list='. SIDL'; for subdir in $list; do \
if test "$subdir" = .; then :; else \
test -d "/home/jason/moab/test/dist/moab-3.99/tools/iMesh/$subdir" \
|| /bin/mkdir -p "/home/jason/moab/test/dist/moab-3.99/tools/iMesh/$subdir" \
|| exit 1; \
distdir=`CDPATH="${ZSH_VERSION+.}:" && cd /home/jason/moab/test/dist/moab-3.99/tools/iMesh && pwd`; \
top_distdir=`CDPATH="${ZSH_VERSION+.}:" && cd /home/jason/moab/test/dist/moab-3.99 && pwd`; \
(cd $subdir && \
make \
top_distdir="$top_distdir" \
distdir="$distdir/$subdir" \
am__remove_distdir=: \
am__skip_length_check=: \
distdir) \
|| exit 1; \
fi; \
done
make[3]: Entering directory `/home/jason/moab/test/dist/tools/iMesh/SIDL'
test -d /home/jason/moab/test/dist/moab-3.99/tools/iMesh/SIDL || /bin/mkdir -p /home/jason/moab/test/dist/moab-3.99/tools/iMesh/SIDL || exit 1
test -d /home/jason/moab/test/dist/moab-3.99/tools/iMesh/SIDL/mserver || /bin/mkdir -p /home/jason/moab/test/dist/moab-3.99/tools/iMesh/SIDL/mserver || exit 1
cp -p ../../../../src/tools/iMesh/SIDL/iBase.sidl /home/jason/moab/test/dist/moab-3.99/tools/iMesh/SIDL/iBase.sidl
cp -p ../../../../src/tools/iMesh/SIDL/iMesh.sidl /home/jason/moab/test/dist/moab-3.99/tools/iMesh/SIDL/iMesh.sidl
cp -p ../../../../src/tools/iMesh/SIDL/iMesh_SIDL.sidl /home/jason/moab/test/dist/moab-3.99/tools/iMesh/SIDL/iMesh_SIDL.sidl
cp -p ../../../../src/tools/iMesh/SIDL/mserver/iBase_Error_Impl.cc /home/jason/moab/test/dist/moab-3.99/tools/iMesh/SIDL/mserver/iBase_Error_Impl.cc
cp -p ../../../../src/tools/iMesh/SIDL/mserver/iBase_Error_Impl.hh /home/jason/moab/test/dist/moab-3.99/tools/iMesh/SIDL/mserver/iBase_Error_Impl.hh
cp -p ../../../../src/tools/iMesh/SIDL/mserver/iMesh_SIDL_MeshSidl_Impl.cc /home/jason/moab/test/dist/moab-3.99/tools/iMesh/SIDL/mserver/iMesh_SIDL_MeshSidl_Impl.cc
cp -p ../../../../src/tools/iMesh/SIDL/mserver/iMesh_SIDL_MeshSidl_Impl.hh /home/jason/moab/test/dist/moab-3.99/tools/iMesh/SIDL/mserver/iMesh_SIDL_MeshSidl_Impl.hh
cp -p ../../../../src/tools/iMesh/SIDL/mserver/iMesh_Factory_Impl.cc /home/jason/moab/test/dist/moab-3.99/tools/iMesh/SIDL/mserver/iMesh_Factory_Impl.cc
cp -p ../../../../src/tools/iMesh/SIDL/iBase_SIDL_defs.h /home/jason/moab/test/dist/moab-3.99/tools/iMesh/SIDL/iBase_SIDL_defs.h
cp -p ../../../../src/tools/iMesh/SIDL/testcxx.cpp /home/jason/moab/test/dist/moab-3.99/tools/iMesh/SIDL/testcxx.cpp
cp -p ../../../../src/tools/iMesh/SIDL/mserver.make /home/jason/moab/test/dist/moab-3.99/tools/iMesh/SIDL/mserver.make
cp -p ../../../../src/tools/iMesh/SIDL/Cclient.make /home/jason/moab/test/dist/moab-3.99/tools/iMesh/SIDL/Cclient.make
cp -p ../../../../src/tools/iMesh/SIDL/Fclient.make /home/jason/moab/test/dist/moab-3.99/tools/iMesh/SIDL/Fclient.make
make[3]: Leaving directory `/home/jason/moab/test/dist/tools/iMesh/SIDL'
make[2]: Leaving directory `/home/jason/moab/test/dist/tools/iMesh'
make[2]: Entering directory `/home/jason/moab/test/dist/tools/mbchaco'
make[2]: Leaving directory `/home/jason/moab/test/dist/tools/mbchaco'
make[2]: Entering directory `/home/jason/moab/test/dist/tools/mbcoupler'
make[2]: Leaving directory `/home/jason/moab/test/dist/tools/mbcoupler'
make[2]: Entering directory `/home/jason/moab/test/dist/tools/mbzoltan'
make[2]: Leaving directory `/home/jason/moab/test/dist/tools/mbzoltan'
make[2]: Entering directory `/home/jason/moab/test/dist/tools/mbperf'
make[2]: Leaving directory `/home/jason/moab/test/dist/tools/mbperf'
make[2]: Entering directory `/home/jason/moab/test/dist/tools/mcnpmit'
make[2]: Leaving directory `/home/jason/moab/test/dist/tools/mcnpmit'
make[2]: Entering directory `/home/jason/moab/test/dist/tools/qvdual'
make[2]: Leaving directory `/home/jason/moab/test/dist/tools/qvdual'
make[2]: Entering directory `/home/jason/moab/test/dist/tools/dagmc'
make[2]: Leaving directory `/home/jason/moab/test/dist/tools/dagmc'
make[1]: Leaving directory `/home/jason/moab/test/dist/tools'
make[1]: Entering directory `/home/jason/moab/test/dist/doc'
make[1]: Leaving directory `/home/jason/moab/test/dist/doc'
make[1]: Entering directory `/home/jason/moab/test/dist/doxygen'
make[1]: Leaving directory `/home/jason/moab/test/dist/doxygen'
find moab-3.99 -type d ! -perm -777 -exec chmod a+rwx {} \; -o \
! -type d ! -perm -444 -links 1 -exec chmod a+r {} \; -o \
! -type d ! -perm -400 -exec chmod a+r {} \; -o \
! -type d ! -perm -444 -exec /bin/sh /home/jason/moab/test/src/install-sh -c -m a+r {} {} \; \
|| chmod -R a+r moab-3.99
tardir=moab-3.99 && /bin/sh /home/jason/moab/test/src/missing --run tar chof - "$tardir" | GZIP=--best gzip -c >moab-3.99.tar.gz
{ test ! -d moab-3.99 || { find moab-3.99 -type d ! -perm -200 -exec chmod u+w {} ';' && rm -fr moab-3.99; }; }
case 'moab-3.99.tar.gz' in \
*.tar.gz*) \
GZIP=--best gunzip -c moab-3.99.tar.gz | /bin/sh /home/jason/moab/test/src/missing --run tar xf - ;;\
*.tar.bz2*) \
bunzip2 -c moab-3.99.tar.bz2 | /bin/sh /home/jason/moab/test/src/missing --run tar xf - ;;\
*.tar.lzma*) \
unlzma -c moab-3.99.tar.lzma | /bin/sh /home/jason/moab/test/src/missing --run tar xf - ;;\
*.tar.Z*) \
uncompress -c moab-3.99.tar.Z | /bin/sh /home/jason/moab/test/src/missing --run tar xf - ;;\
*.shar.gz*) \
GZIP=--best gunzip -c moab-3.99.shar.gz | unshar ;;\
*.zip*) \
unzip moab-3.99.zip ;;\
esac
chmod -R a-w moab-3.99; chmod a+w moab-3.99
mkdir moab-3.99/_build
mkdir moab-3.99/_inst
chmod a-w moab-3.99
dc_install_base=`CDPATH="${ZSH_VERSION+.}:" && cd moab-3.99/_inst && pwd | sed -e 's,^[^:\\/]:[\\/],/,'` \
&& dc_destdir="${TMPDIR-/tmp}/am-dc-$$/" \
&& cd moab-3.99/_build \
&& ../configure --srcdir=.. --prefix="$dc_install_base" \
\
&& make \
&& make dvi \
&& make check \
&& make install \
&& make installcheck \
&& make uninstall \
&& make distuninstallcheck_dir="$dc_install_base" \
distuninstallcheck \
&& chmod -R a-w "$dc_install_base" \
&& ({ \
(cd ../.. && umask 077 && mkdir "$dc_destdir") \
&& make DESTDIR="$dc_destdir" install \
&& make DESTDIR="$dc_destdir" uninstall \
&& make DESTDIR="$dc_destdir" \
distuninstallcheck_dir="$dc_destdir" distuninstallcheck; \
} || { rm -rf "$dc_destdir"; exit 1; }) \
&& rm -rf "$dc_destdir" \
&& make dist \
&& rm -rf moab-3.99.tar.gz \
&& make distcleancheck
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking target system type... x86_64-unknown-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for sed... sed
checking for style of include used by make... GNU
checking for cc... cc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether cc accepts -g... yes
checking for cc option to accept ISO C89... none needed
checking dependency style of cc... gcc3
checking how to run the C preprocessor... cc -E
checking for CC... no
checking for aCC... no
checking for cxx... no
checking for xlC_r... no
checking for xlC... no
checking for c++... c++
checking whether we are using the GNU C++ compiler... yes
checking whether c++ accepts -g... yes
checking dependency style of c++... gcc3
checking how to run the C++ preprocessor... c++ -E
checking for gfortran... gfortran
checking whether we are using the GNU Fortran compiler... yes
checking whether gfortran accepts -g... yes
checking for gfortran... gfortran
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
checking for known C compilers... GNU
checking for known compiler/OS combinations... GNU:x86_64
checking for known c++ compilers... GNU
checking for known compiler/OS combinations... GNU:x86_64
checking whether ln -s works... yes
checking whether make sets $(MAKE)... (cached) yes
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ld used by cc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for /usr/bin/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/nm -B
checking how to recognize dependent libraries... pass_all
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking how to run the C++ preprocessor... c++ -E
checking the maximum length of command line arguments... 98304
checking command to parse /usr/bin/nm -B output from cc object... ok
checking for objdir... .libs
checking for ar... ar
checking for ranlib... ranlib
checking for strip... strip
checking if cc supports -fno-rtti -fno-exceptions... no
checking for cc option to produce PIC... -fPIC
checking if cc PIC flag -fPIC works... yes
checking if cc static flag -static works... yes
checking if cc supports -c -o file.o... yes
checking whether the cc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
configure: creating libtool
appending configuration tag "CXX" to libtool
checking for ld used by c++... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the c++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for c++ option to produce PIC... -fPIC
checking if c++ PIC flag -fPIC works... yes
checking if c++ static flag -static works... yes
checking if c++ supports -c -o file.o... yes
checking whether the c++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
(cached) (cached) checking how to hardcode library paths into programs... immediate
appending configuration tag "F77" to libtool
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... yes
checking if gfortran supports -c -o file.o... yes
checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
(cached) (cached) checking how to hardcode library paths into programs... immediate
checking for gunzip... gunzip -c
checking for gzip... (cached) gunzip -c
checking for zcat... (cached) gunzip -c
checking if C++ compiler supports template class specialization... yes
checking if C++ compiler supports template function specialization... yes
checking how to get verbose linking output from gfortran... -v
checking for Fortran libraries of gfortran... -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../.. -lgfortranbegin -lgfortran -lm
checking for dummy main to link with Fortran libraries... none
checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore
checking for inttypes.h... (cached) yes
checking for stdint.h... (cached) yes
checking for sys/types.h... (cached) yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking for stdlib.h... (cached) yes
checking for size_t... yes
checking for ptrdiff_t... yes
checking ieeefp.h usability... no
checking ieeefp.h presence... no
checking for ieeefp.h... no
checking for C++ unordered_map... std::tr1
checking for deflate in -lz... yes
checking for SZ_Decompress in -lsz... no
checking if HDF5 support is enabled... yes
checking hdf5.h usability... yes
checking hdf5.h presence... yes
checking for hdf5.h... yes
checking for H5Fopen in -lhdf5... yes
checking if NetCDF support is enabled... yes
checking strstream.h usability... no
checking strstream.h presence... no
checking for strstream.h... no
checking sstream.h usability... no
checking sstream.h presence... no
checking for sstream.h... no
checking strstream usability... yes
checking strstream presence... yes
checking for strstream... yes
checking netcdf.h usability... yes
checking netcdf.h presence... yes
checking for netcdf.h... yes
checking for netcdf.hh... yes
checking for netcdf_c++ library... yes
checking if mbconvert is to be built... yes
checking if hexmodops is to be built... yes
checking if mbchaco is to be built... no
checking if mbperf is to be built... yes
checking if qvdual is to be built... no
checking if mbsize is to be built... yes
checking if mbskin is to be built... yes
checking if mbtagprop is to be built... yes
checking if mcnpmit is to be built... no
checking if mbcoupler is to be built... no
checking if spheredecomp is to be built... yes
checking if mbsurfplot is to be built... yes
checking if mbzoltan is to be built... no
checking if dagmc is to be built... yes
checking if gsets is to be built... yes
checking if iMesh support is to be built... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating moab.make
config.status: creating testdir.h
config.status: creating parallel/Makefile
config.status: creating mhdf/Makefile
config.status: creating test/Makefile
config.status: creating test/h5file/Makefile
config.status: creating test/dual/Makefile
config.status: creating test/obb/Makefile
config.status: creating test/perf/Makefile
config.status: creating tools/Makefile
config.status: creating tools/iMesh/Makefile
config.status: creating tools/iMesh/iMesh-Defs.inc
config.status: creating tools/iMesh/SIDL/iMesh-SIDL-Defs.inc
config.status: creating tools/iMesh/SIDL/Makefile
config.status: creating tools/iMesh/SIDL/common.make
config.status: creating tools/mbperf/Makefile
config.status: creating tools/mbchaco/Makefile
config.status: creating tools/mbcoupler/Makefile
config.status: creating tools/mbzoltan/Config.moab
config.status: creating tools/mbzoltan/Makefile
config.status: creating tools/mcnpmit/Makefile
config.status: creating tools/qvdual/Makefile
config.status: creating tools/dagmc/Makefile
config.status: creating tools/dagmc/dagmc.make
config.status: creating doc/Makefile
config.status: creating doxygen/Makefile
config.status: creating config.h
config.status: creating MBVersion.h
config.status: creating MBEntityHandle.h
config.status: creating MBCN_FCDefs.h
config.status: executing depfiles commands
C: cc -Wall -pipe -pedantic -O2 -DNDEBUG -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map
C++: c++ -Wall -pipe -pedantic -O2 -DNDEBUG -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map
Fortran: gfortran -g -O2 -O2 -DNDEBUG
make[1]: Entering directory `/home/jason/moab/test/dist/moab-3.99/_build'
make all-recursive
make[2]: Entering directory `/home/jason/moab/test/dist/moab-3.99/_build'
Making all in mhdf
make[3]: Entering directory `/home/jason/moab/test/dist/moab-3.99/_build/mhdf'
/bin/sh ../libtool --tag=CC --mode=compile cc -I../../mhdf/include -I. -I../../mhdf -I.. -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -O2 -DNDEBUG -MT adjacency.lo -MD -MP -MF .deps/adjacency.Tpo -c -o adjacency.lo `test -f 'src/adjacency.c' || echo '../../mhdf/'`src/adjacency.c
cc -I../../mhdf/include -I. -I../../mhdf -I.. -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -O2 -DNDEBUG -MT adjacency.lo -MD -MP -MF .deps/adjacency.Tpo -c ../../mhdf/src/adjacency.c -o adjacency.o
In file included from ../../mhdf/src/adjacency.c:19:
../../mhdf/include/mhdf.h:2253:3: warning: C++ style comments are not allowed in ISO C90
../../mhdf/include/mhdf.h:2253:3: warning: (this will be reported only once per input file)
In file included from ../../mhdf/src/util.h:22,
from ../../mhdf/src/adjacency.c:20:
../../mhdf/src/file-handle.h:42:3: warning: C++ style comments are not allowed in ISO C90
../../mhdf/src/file-handle.h:42:3: warning: (this will be reported only once per input file)
In file included from ../../mhdf/src/adjacency.c:20:
../../mhdf/src/util.h:158:3: warning: C++ style comments are not allowed in ISO C90
../../mhdf/src/util.h:158:3: warning: (this will be reported only once per input file)
mv -f .deps/adjacency.Tpo .deps/adjacency.Plo
/bin/sh ../libtool --tag=CC --mode=compile cc -I../../mhdf/include -I. -I../../mhdf -I.. -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -O2 -DNDEBUG -MT connectivity.lo -MD -MP -MF .deps/connectivity.Tpo -c -o connectivity.lo `test -f 'src/connectivity.c' || echo '../../mhdf/'`src/connectivity.c
cc -I../../mhdf/include -I. -I../../mhdf -I.. -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -O2 -DNDEBUG -MT connectivity.lo -MD -MP -MF .deps/connectivity.Tpo -c ../../mhdf/src/connectivity.c -o connectivity.o
In file included from ../../mhdf/src/connectivity.c:20:
../../mhdf/include/mhdf.h:2253:3: warning: C++ style comments are not allowed in ISO C90
../../mhdf/include/mhdf.h:2253:3: warning: (this will be reported only once per input file)
In file included from ../../mhdf/src/util.h:22,
from ../../mhdf/src/connectivity.c:21:
../../mhdf/src/file-handle.h:42:3: warning: C++ style comments are not allowed in ISO C90
../../mhdf/src/file-handle.h:42:3: warning: (this will be reported only once per input file)
In file included from ../../mhdf/src/connectivity.c:21:
../../mhdf/src/util.h:158:3: warning: C++ style comments are not allowed in ISO C90
../../mhdf/src/util.h:158:3: warning: (this will be reported only once per input file)
mv -f .deps/connectivity.Tpo .deps/connectivity.Plo
/bin/sh ../libtool --tag=CC --mode=compile cc -I../../mhdf/include -I. -I../../mhdf -I.. -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -O2 -DNDEBUG -MT file-handle.lo -MD -MP -MF .deps/file-handle.Tpo -c -o file-handle.lo `test -f 'src/file-handle.c' || echo '../../mhdf/'`src/file-handle.c
cc -I../../mhdf/include -I. -I../../mhdf -I.. -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -O2 -DNDEBUG -MT file-handle.lo -MD -MP -MF .deps/file-handle.Tpo -c ../../mhdf/src/file-handle.c -o file-handle.o
In file included from ../../mhdf/src/file-handle.h:23,
from ../../mhdf/src/file-handle.c:19:
../../mhdf/include/mhdf.h:2253:3: warning: C++ style comments are not allowed in ISO C90
../../mhdf/include/mhdf.h:2253:3: warning: (this will be reported only once per input file)
In file included from ../../mhdf/src/file-handle.c:19:
../../mhdf/src/file-handle.h:42:3: warning: C++ style comments are not allowed in ISO C90
../../mhdf/src/file-handle.h:42:3: warning: (this will be reported only once per input file)
In file included from ../../mhdf/src/file-handle.c:21:
../../mhdf/src/util.h:158:3: warning: C++ style comments are not allowed in ISO C90
../../mhdf/src/util.h:158:3: warning: (this will be reported only once per input file)
mv -f .deps/file-handle.Tpo .deps/file-handle.Plo
/bin/sh ../libtool --tag=CC --mode=compile cc -I../../mhdf/include -I. -I../../mhdf -I.. -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -O2 -DNDEBUG -MT file.lo -MD -MP -MF .deps/file.Tpo -c -o file.lo `test -f 'src/file.c' || echo '../../mhdf/'`src/file.c
cc -I../../mhdf/include -I. -I../../mhdf -I.. -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -O2 -DNDEBUG -MT file.lo -MD -MP -MF .deps/file.Tpo -c ../../mhdf/src/file.c -o file.o
In file included from ../../mhdf/src/file.c:25:
../../mhdf/include/mhdf.h:2253:3: warning: C++ style comments are not allowed in ISO C90
../../mhdf/include/mhdf.h:2253:3: warning: (this will be reported only once per input file)
In file included from ../../mhdf/src/util.h:22,
from ../../mhdf/src/file.c:28:
../../mhdf/src/file-handle.h:42:3: warning: C++ style comments are not allowed in ISO C90
../../mhdf/src/file-handle.h:42:3: warning: (this will be reported only once per input file)
In file included from ../../mhdf/src/file.c:28:
../../mhdf/src/util.h:158:3: warning: C++ style comments are not allowed in ISO C90
../../mhdf/src/util.h:158:3: warning: (this will be reported only once per input file)
mv -f .deps/file.Tpo .deps/file.Plo
/bin/sh ../libtool --tag=CC --mode=compile cc -I../../mhdf/include -I. -I../../mhdf -I.. -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -O2 -DNDEBUG -MT nodes.lo -MD -MP -MF .deps/nodes.Tpo -c -o nodes.lo `test -f 'src/nodes.c' || echo '../../mhdf/'`src/nodes.c
cc -I../../mhdf/include -I. -I../../mhdf -I.. -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -O2 -DNDEBUG -MT nodes.lo -MD -MP -MF .deps/nodes.Tpo -c ../../mhdf/src/nodes.c -o nodes.o
In file included from ../../mhdf/src/nodes.c:19:
../../mhdf/include/mhdf.h:2253:3: warning: C++ style comments are not allowed in ISO C90
../../mhdf/include/mhdf.h:2253:3: warning: (this will be reported only once per input file)
In file included from ../../mhdf/src/util.h:22,
from ../../mhdf/src/nodes.c:22:
../../mhdf/src/file-handle.h:42:3: warning: C++ style comments are not allowed in ISO C90
../../mhdf/src/file-handle.h:42:3: warning: (this will be reported only once per input file)
In file included from ../../mhdf/src/nodes.c:22:
../../mhdf/src/util.h:158:3: warning: C++ style comments are not allowed in ISO C90
../../mhdf/src/util.h:158:3: warning: (this will be reported only once per input file)
mv -f .deps/nodes.Tpo .deps/nodes.Plo
/bin/sh ../libtool --tag=CC --mode=compile cc -I../../mhdf/include -I. -I../../mhdf -I.. -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -O2 -DNDEBUG -MT sets.lo -MD -MP -MF .deps/sets.Tpo -c -o sets.lo `test -f 'src/sets.c' || echo '../../mhdf/'`src/sets.c
cc -I../../mhdf/include -I. -I../../mhdf -I.. -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -O2 -DNDEBUG -MT sets.lo -MD -MP -MF .deps/sets.Tpo -c ../../mhdf/src/sets.c -o sets.o
In file included from ../../mhdf/src/sets.c:21:
../../mhdf/include/mhdf.h:2253:3: warning: C++ style comments are not allowed in ISO C90
../../mhdf/include/mhdf.h:2253:3: warning: (this will be reported only once per input file)
In file included from ../../mhdf/src/util.h:22,
from ../../mhdf/src/sets.c:22:
../../mhdf/src/file-handle.h:42:3: warning: C++ style comments are not allowed in ISO C90
../../mhdf/src/file-handle.h:42:3: warning: (this will be reported only once per input file)
In file included from ../../mhdf/src/sets.c:22:
../../mhdf/src/util.h:158:3: warning: C++ style comments are not allowed in ISO C90
../../mhdf/src/util.h:158:3: warning: (this will be reported only once per input file)
../../mhdf/src/sets.c: In function ‘mhdf_readwriteSetMeta’:
../../mhdf/src/sets.c:214: warning: initializer element is not computable at load time
mv -f .deps/sets.Tpo .deps/sets.Plo
/bin/sh ../libtool --tag=CC --mode=compile cc -I../../mhdf/include -I. -I../../mhdf -I.. -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -O2 -DNDEBUG -MT status.lo -MD -MP -MF .deps/status.Tpo -c -o status.lo `test -f 'src/status.c' || echo '../../mhdf/'`src/status.c
cc -I../../mhdf/include -I. -I../../mhdf -I.. -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -O2 -DNDEBUG -MT status.lo -MD -MP -MF .deps/status.Tpo -c ../../mhdf/src/status.c -o status.o
In file included from ../../mhdf/src/status.h:19,
from ../../mhdf/src/status.c:20:
../../mhdf/include/mhdf.h:2253:3: warning: C++ style comments are not allowed in ISO C90
../../mhdf/include/mhdf.h:2253:3: warning: (this will be reported only once per input file)
mv -f .deps/status.Tpo .deps/status.Plo
/bin/sh ../libtool --tag=CC --mode=compile cc -I../../mhdf/include -I. -I../../mhdf -I.. -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -O2 -DNDEBUG -MT tags.lo -MD -MP -MF .deps/tags.Tpo -c -o tags.lo `test -f 'src/tags.c' || echo '../../mhdf/'`src/tags.c
cc -I../../mhdf/include -I. -I../../mhdf -I.. -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -O2 -DNDEBUG -MT tags.lo -MD -MP -MF .deps/tags.Tpo -c ../../mhdf/src/tags.c -o tags.o
In file included from ../../mhdf/src/status.h:19,
from ../../mhdf/src/tags.c:24:
../../mhdf/include/mhdf.h:2253:3: warning: C++ style comments are not allowed in ISO C90
../../mhdf/include/mhdf.h:2253:3: warning: (this will be reported only once per input file)
In file included from ../../mhdf/src/tags.c:25:
../../mhdf/src/file-handle.h:42:3: warning: C++ style comments are not allowed in ISO C90
../../mhdf/src/file-handle.h:42:3: warning: (this will be reported only once per input file)
In file included from ../../mhdf/src/tags.c:27:
../../mhdf/src/util.h:158:3: warning: C++ style comments are not allowed in ISO C90
../../mhdf/src/util.h:158:3: warning: (this will be reported only once per input file)
mv -f .deps/tags.Tpo .deps/tags.Plo
/bin/sh ../libtool --tag=CC --mode=compile cc -I../../mhdf/include -I. -I../../mhdf -I.. -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -O2 -DNDEBUG -MT util.lo -MD -MP -MF .deps/util.Tpo -c -o util.lo `test -f 'src/util.c' || echo '../../mhdf/'`src/util.c
cc -I../../mhdf/include -I. -I../../mhdf -I.. -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -O2 -DNDEBUG -MT util.lo -MD -MP -MF .deps/util.Tpo -c ../../mhdf/src/util.c -o util.o
In file included from ../../mhdf/src/status.h:19,
from ../../mhdf/src/util.h:21,
from ../../mhdf/src/util.c:21:
../../mhdf/include/mhdf.h:2253:3: warning: C++ style comments are not allowed in ISO C90
../../mhdf/include/mhdf.h:2253:3: warning: (this will be reported only once per input file)
In file included from ../../mhdf/src/util.h:22,
from ../../mhdf/src/util.c:21:
../../mhdf/src/file-handle.h:42:3: warning: C++ style comments are not allowed in ISO C90
../../mhdf/src/file-handle.h:42:3: warning: (this will be reported only once per input file)
In file included from ../../mhdf/src/util.c:21:
../../mhdf/src/util.h:158:3: warning: C++ style comments are not allowed in ISO C90
../../mhdf/src/util.h:158:3: warning: (this will be reported only once per input file)
mv -f .deps/util.Tpo .deps/util.Plo
/bin/sh ../libtool --tag=CC --mode=link cc -Wall -pipe -pedantic -O2 -DNDEBUG -o libmhdf.la adjacency.lo connectivity.lo file-handle.lo file.lo nodes.lo sets.lo status.lo tags.lo util.lo -lhdf5 -lm
mkdir .libs
ar cru .libs/libmhdf.a adjacency.o connectivity.o file-handle.o file.o nodes.o sets.o status.o tags.o util.o
ranlib .libs/libmhdf.a
creating libmhdf.la
(cd .libs && rm -f libmhdf.la && ln -s ../libmhdf.la libmhdf.la)
make[3]: Leaving directory `/home/jason/moab/test/dist/moab-3.99/_build/mhdf'
Making all in .
make[3]: Entering directory `/home/jason/moab/test/dist/moab-3.99/_build'
/bin/sh ./libtool --tag=CXX --mode=compile c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT AEntityFactory.lo -MD -MP -MF .deps/AEntityFactory.Tpo -c -o AEntityFactory.lo ../AEntityFactory.cpp
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT AEntityFactory.lo -MD -MP -MF .deps/AEntityFactory.Tpo -c ../AEntityFactory.cpp -o AEntityFactory.o
mv -f .deps/AEntityFactory.Tpo .deps/AEntityFactory.Plo
/bin/sh ./libtool --tag=CXX --mode=compile c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT DualTool.lo -MD -MP -MF .deps/DualTool.Tpo -c -o DualTool.lo ../DualTool.cpp
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT DualTool.lo -MD -MP -MF .deps/DualTool.Tpo -c ../DualTool.cpp -o DualTool.o
../DualTool.cpp: In member function ‘MBErrorCode DualTool::split_pair_nonmanifold(MBEntityHandle*, MBEntityHandle*, MBEntityHandle*, std::vector<long unsigned int, std::allocator<long unsigned int> >*, std::vector<long unsigned int, std::allocator<long unsigned int> >*, MBEntityHandle*, MBEntityHandle*, MBEntityHandle*, MBEntityHandle*, MBEntityHandle*)’:
../DualTool.cpp:1976: warning: unused variable ‘cond1’
../DualTool.cpp:1985: warning: unused variable ‘cond2’
../DualTool.cpp: In member function ‘MBErrorCode DualTool::foc_get_stars(MBEntityHandle*, MBEntityHandle*, std::vector<long unsigned int, std::allocator<long unsigned int> >*, std::vector<long unsigned int, std::allocator<long unsigned int> >*)’:
../DualTool.cpp:2096: warning: ‘on_bdy’ may be used uninitialized in this function
mv -f .deps/DualTool.Tpo .deps/DualTool.Plo
/bin/sh ./libtool --tag=CXX --mode=compile c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT EntitySequence.lo -MD -MP -MF .deps/EntitySequence.Tpo -c -o EntitySequence.lo ../EntitySequence.cpp
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT EntitySequence.lo -MD -MP -MF .deps/EntitySequence.Tpo -c ../EntitySequence.cpp -o EntitySequence.o
mv -f .deps/EntitySequence.Tpo .deps/EntitySequence.Plo
/bin/sh ./libtool --tag=CXX --mode=compile c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT ExoIIUtil.lo -MD -MP -MF .deps/ExoIIUtil.Tpo -c -o ExoIIUtil.lo ../ExoIIUtil.cpp
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT ExoIIUtil.lo -MD -MP -MF .deps/ExoIIUtil.Tpo -c ../ExoIIUtil.cpp -o ExoIIUtil.o
mv -f .deps/ExoIIUtil.Tpo .deps/ExoIIUtil.Plo
/bin/sh ./libtool --tag=CXX --mode=compile c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT FileOptions.lo -MD -MP -MF .deps/FileOptions.Tpo -c -o FileOptions.lo ../FileOptions.cpp
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT FileOptions.lo -MD -MP -MF .deps/FileOptions.Tpo -c ../FileOptions.cpp -o FileOptions.o
mv -f .deps/FileOptions.Tpo .deps/FileOptions.Plo
/bin/sh ./libtool --tag=CXX --mode=compile c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT FileTokenizer.lo -MD -MP -MF .deps/FileTokenizer.Tpo -c -o FileTokenizer.lo ../FileTokenizer.cpp
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT FileTokenizer.lo -MD -MP -MF .deps/FileTokenizer.Tpo -c ../FileTokenizer.cpp -o FileTokenizer.o
mv -f .deps/FileTokenizer.Tpo .deps/FileTokenizer.Plo
/bin/sh ./libtool --tag=CXX --mode=compile c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT GeomTopoTool.lo -MD -MP -MF .deps/GeomTopoTool.Tpo -c -o GeomTopoTool.lo ../GeomTopoTool.cpp
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT GeomTopoTool.lo -MD -MP -MF .deps/GeomTopoTool.Tpo -c ../GeomTopoTool.cpp -o GeomTopoTool.o
mv -f .deps/GeomTopoTool.Tpo .deps/GeomTopoTool.Plo
/bin/sh ./libtool --tag=CXX --mode=compile c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT HigherOrderFactory.lo -MD -MP -MF .deps/HigherOrderFactory.Tpo -c -o HigherOrderFactory.lo ../HigherOrderFactory.cpp
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT HigherOrderFactory.lo -MD -MP -MF .deps/HigherOrderFactory.Tpo -c ../HigherOrderFactory.cpp -o HigherOrderFactory.o
mv -f .deps/HigherOrderFactory.Tpo .deps/HigherOrderFactory.Plo
/bin/sh ./libtool --tag=CXX --mode=compile c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT HomXform.lo -MD -MP -MF .deps/HomXform.Tpo -c -o HomXform.lo ../HomXform.cpp
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT HomXform.lo -MD -MP -MF .deps/HomXform.Tpo -c ../HomXform.cpp -o HomXform.o
mv -f .deps/HomXform.Tpo .deps/HomXform.Plo
/bin/sh ./libtool --tag=CXX --mode=compile c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT MBAdaptiveKDTree.lo -MD -MP -MF .deps/MBAdaptiveKDTree.Tpo -c -o MBAdaptiveKDTree.lo ../MBAdaptiveKDTree.cpp
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT MBAdaptiveKDTree.lo -MD -MP -MF .deps/MBAdaptiveKDTree.Tpo -c ../MBAdaptiveKDTree.cpp -o MBAdaptiveKDTree.o
../MBAdaptiveKDTree.cpp:1717: warning: ‘MBErrorCode closest_to_triangles(MBInterface*, MBEntityHandle, double, const MBCartVect&, std::vector<long unsigned int, std::allocator<long unsigned int> >&, std::vector<MBCartVect, std::allocator<MBCartVect> >&)’ defined but not used
mv -f .deps/MBAdaptiveKDTree.Tpo .deps/MBAdaptiveKDTree.Plo
/bin/sh ./libtool --tag=CXX --mode=compile c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT MBAffineXform.lo -MD -MP -MF .deps/MBAffineXform.Tpo -c -o MBAffineXform.lo ../MBAffineXform.cpp
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT MBAffineXform.lo -MD -MP -MF .deps/MBAffineXform.Tpo -c ../MBAffineXform.cpp -o MBAffineXform.o
mv -f .deps/MBAffineXform.Tpo .deps/MBAffineXform.Plo
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c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT WriteAns.lo -MD -MP -MF .deps/WriteAns.Tpo -c ../WriteAns.cpp -o WriteAns.o
mv -f .deps/WriteAns.Tpo .deps/WriteAns.Plo
/bin/sh ./libtool --tag=CXX --mode=compile c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT WriteGMV.lo -MD -MP -MF .deps/WriteGMV.Tpo -c -o WriteGMV.lo ../WriteGMV.cpp
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT WriteGMV.lo -MD -MP -MF .deps/WriteGMV.Tpo -c ../WriteGMV.cpp -o WriteGMV.o
mv -f .deps/WriteGMV.Tpo .deps/WriteGMV.Plo
/bin/sh ./libtool --tag=CXX --mode=compile c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT WriteGmsh.lo -MD -MP -MF .deps/WriteGmsh.Tpo -c -o WriteGmsh.lo ../WriteGmsh.cpp
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT WriteGmsh.lo -MD -MP -MF .deps/WriteGmsh.Tpo -c ../WriteGmsh.cpp -o WriteGmsh.o
mv -f .deps/WriteGmsh.Tpo .deps/WriteGmsh.Plo
/bin/sh ./libtool --tag=CXX --mode=compile c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT WriteSTL.lo -MD -MP -MF .deps/WriteSTL.Tpo -c -o WriteSTL.lo ../WriteSTL.cpp
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT WriteSTL.lo -MD -MP -MF .deps/WriteSTL.Tpo -c ../WriteSTL.cpp -o WriteSTL.o
mv -f .deps/WriteSTL.Tpo .deps/WriteSTL.Plo
/bin/sh ./libtool --tag=CXX --mode=compile c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT WriteTemplate.lo -MD -MP -MF .deps/WriteTemplate.Tpo -c -o WriteTemplate.lo ../WriteTemplate.cpp
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT WriteTemplate.lo -MD -MP -MF .deps/WriteTemplate.Tpo -c ../WriteTemplate.cpp -o WriteTemplate.o
mv -f .deps/WriteTemplate.Tpo .deps/WriteTemplate.Plo
/bin/sh ./libtool --tag=CXX --mode=compile c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT WriteVtk.lo -MD -MP -MF .deps/WriteVtk.Tpo -c -o WriteVtk.lo ../WriteVtk.cpp
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT WriteVtk.lo -MD -MP -MF .deps/WriteVtk.Tpo -c ../WriteVtk.cpp -o WriteVtk.o
mv -f .deps/WriteVtk.Tpo .deps/WriteVtk.Plo
/bin/sh ./libtool --tag=CXX --mode=compile c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT ReadNCDF.lo -MD -MP -MF .deps/ReadNCDF.Tpo -c -o ReadNCDF.lo ../ReadNCDF.cpp
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT ReadNCDF.lo -MD -MP -MF .deps/ReadNCDF.Tpo -c ../ReadNCDF.cpp -o ReadNCDF.o
../ReadNCDF.cpp: In member function ‘MBErrorCode ReadNCDF::update(const char*, const FileOptions&)’:
../ReadNCDF.cpp:1987: warning: ‘op’ may be used uninitialized in this function
../ReadNCDF.cpp:2034: warning: ‘coordz’ may be used uninitialized in this function
../ReadNCDF.cpp:2080: warning: ‘coord3’ may be used uninitialized in this function
mv -f .deps/ReadNCDF.Tpo .deps/ReadNCDF.Plo
/bin/sh ./libtool --tag=CXX --mode=compile c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT WriteNCDF.lo -MD -MP -MF .deps/WriteNCDF.Tpo -c -o WriteNCDF.lo ../WriteNCDF.cpp
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT WriteNCDF.lo -MD -MP -MF .deps/WriteNCDF.Tpo -c ../WriteNCDF.cpp -o WriteNCDF.o
mv -f .deps/WriteNCDF.Tpo .deps/WriteNCDF.Plo
/bin/sh ./libtool --tag=CXX --mode=compile c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT WriteSLAC.lo -MD -MP -MF .deps/WriteSLAC.Tpo -c -o WriteSLAC.lo ../WriteSLAC.cpp
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT WriteSLAC.lo -MD -MP -MF .deps/WriteSLAC.Tpo -c ../WriteSLAC.cpp -o WriteSLAC.o
mv -f .deps/WriteSLAC.Tpo .deps/WriteSLAC.Plo
/bin/sh ./libtool --tag=CXX --mode=compile c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT ReadHDF5.lo -MD -MP -MF .deps/ReadHDF5.Tpo -c -o ReadHDF5.lo ../ReadHDF5.cpp
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT ReadHDF5.lo -MD -MP -MF .deps/ReadHDF5.Tpo -c ../ReadHDF5.cpp -o ReadHDF5.o
mv -f .deps/ReadHDF5.Tpo .deps/ReadHDF5.Plo
/bin/sh ./libtool --tag=CXX --mode=compile c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT WriteHDF5.lo -MD -MP -MF .deps/WriteHDF5.Tpo -c -o WriteHDF5.lo ../WriteHDF5.cpp
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT WriteHDF5.lo -MD -MP -MF .deps/WriteHDF5.Tpo -c ../WriteHDF5.cpp -o WriteHDF5.o
mv -f .deps/WriteHDF5.Tpo .deps/WriteHDF5.Plo
/bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o libMOAB.la -rpath /home/jason/moab/test/dist/moab-3.99/_inst/lib AEntityFactory.lo DualTool.lo EntitySequence.lo ExoIIUtil.lo FileOptions.lo FileTokenizer.lo GeomTopoTool.lo HigherOrderFactory.lo HomXform.lo MBAdaptiveKDTree.lo MBAffineXform.lo MBAlloc.lo MBAxisBox.lo MBBits.lo MBBSPTree.lo MBCN.lo MBCartVect.lo MBMatrix3.lo MBCore.lo MBFactory.lo MBGeomUtil.lo MBMeshSet.lo MBOrientedBox.lo MBOrientedBoxTreeTool.lo MBRange.lo MBRangeSeqIntersectIter.lo MBReadUtil.lo MBReaderWriterSet.lo MBSkinner.lo MBSysUtil.lo MBUtil.lo MBWriteUtil.lo MeshSetSequence.lo MeshTopoUtil.lo PolyElementSeq.lo ReadGmsh.lo ReadSms.lo ReadSTL.lo ReadVtk.lo ReadIDEAS.lo ReadTetGen.lo ScdElementData.lo ScdVertexData.lo SequenceData.lo SequenceManager.lo SparseTagSuperCollection.lo SparseTagCollection.lo StructuredElementSeq.lo SweptElementSeq.lo TagInfo.lo TagServer.lo Tqdcfr.lo TypeSequenceManager.lo UnstructuredE!
lemSeq.lo VertexSequence.lo VtkUtil.lo WriteAns.lo WriteGMV.lo WriteGmsh.lo WriteSTL.lo WriteTemplate.lo WriteVtk.lo ReadNCDF.lo WriteNCDF.lo WriteSLAC.lo ReadHDF5.lo WriteHDF5.lo -lnetcdf_c++ -lnetcdf -lhdf5 ./mhdf/libmhdf.la -lm
mkdir .libs
rm -fr .libs/libMOAB.lax
mkdir .libs/libMOAB.lax
rm -fr .libs/libMOAB.lax/libmhdf.a
mkdir .libs/libMOAB.lax/libmhdf.a
(cd .libs/libMOAB.lax/libmhdf.a && ar x /home/jason/moab/test/dist/moab-3.99/_build/./mhdf/.libs/libmhdf.a)
ar cru .libs/libMOAB.a AEntityFactory.o DualTool.o EntitySequence.o ExoIIUtil.o FileOptions.o FileTokenizer.o GeomTopoTool.o HigherOrderFactory.o HomXform.o MBAdaptiveKDTree.o MBAffineXform.o MBAlloc.o MBAxisBox.o MBBits.o MBBSPTree.o MBCN.o MBCartVect.o MBMatrix3.o MBCore.o MBFactory.o MBGeomUtil.o MBMeshSet.o MBOrientedBox.o MBOrientedBoxTreeTool.o MBRange.o MBRangeSeqIntersectIter.o MBReadUtil.o MBReaderWriterSet.o MBSkinner.o MBSysUtil.o MBUtil.o MBWriteUtil.o MeshSetSequence.o MeshTopoUtil.o PolyElementSeq.o ReadGmsh.o ReadSms.o ReadSTL.o ReadVtk.o ReadIDEAS.o ReadTetGen.o ScdElementData.o ScdVertexData.o SequenceData.o SequenceManager.o SparseTagSuperCollection.o SparseTagCollection.o StructuredElementSeq.o SweptElementSeq.o TagInfo.o TagServer.o Tqdcfr.o TypeSequenceManager.o UnstructuredElemSeq.o VertexSequence.o VtkUtil.o WriteAns.o WriteGMV.o WriteGmsh.o WriteSTL.o WriteTemplate.o WriteVtk.o ReadNCDF.o WriteNCDF.o WriteSLAC.o ReadHDF5.o WriteHDF5.o .libs/libMOAB.!
lax/libmhdf.a/adjacency.o .libs/libMOAB.lax/libmhdf.a/file-handle.o .libs/libMOAB.lax/libmhdf.a/status.o .libs/libMOAB.lax/libmhdf.a/tags.o .libs/libMOAB.lax/libmhdf.a/file.o .libs/libMOAB.lax/libmhdf.a/nodes.o .libs/libMOAB.lax/libmhdf.a/sets.o .libs/libMOAB.lax/libmhdf.a/connectivity.o .libs/libMOAB.lax/libmhdf.a/util.o
ranlib .libs/libMOAB.a
rm -fr .libs/libMOAB.lax
creating libMOAB.la
(cd .libs && rm -f libMOAB.la && ln -s ../libMOAB.la libMOAB.la)
make[3]: Leaving directory `/home/jason/moab/test/dist/moab-3.99/_build'
Making all in test
make[3]: Entering directory `/home/jason/moab/test/dist/moab-3.99/_build/test'
Making all in dual
make[4]: Entering directory `/home/jason/moab/test/dist/moab-3.99/_build/test/dual'
make[4]: Nothing to be done for `all'.
make[4]: Leaving directory `/home/jason/moab/test/dist/moab-3.99/_build/test/dual'
Making all in h5file
make[4]: Entering directory `/home/jason/moab/test/dist/moab-3.99/_build/test/h5file'
make[4]: Nothing to be done for `all'.
make[4]: Leaving directory `/home/jason/moab/test/dist/moab-3.99/_build/test/h5file'
Making all in obb
make[4]: Entering directory `/home/jason/moab/test/dist/moab-3.99/_build/test/obb'
make[4]: Nothing to be done for `all'.
make[4]: Leaving directory `/home/jason/moab/test/dist/moab-3.99/_build/test/obb'
Making all in perf
make[4]: Entering directory `/home/jason/moab/test/dist/moab-3.99/_build/test/perf'
make[4]: Nothing to be done for `all'.
make[4]: Leaving directory `/home/jason/moab/test/dist/moab-3.99/_build/test/perf'
make[4]: Entering directory `/home/jason/moab/test/dist/moab-3.99/_build/test'
make[4]: Nothing to be done for `all-am'.
make[4]: Leaving directory `/home/jason/moab/test/dist/moab-3.99/_build/test'
make[3]: Leaving directory `/home/jason/moab/test/dist/moab-3.99/_build/test'
Making all in tools
make[3]: Entering directory `/home/jason/moab/test/dist/moab-3.99/_build/tools'
Making all in iMesh
make[4]: Entering directory `/home/jason/moab/test/dist/moab-3.99/_build/tools/iMesh'
make all-recursive
make[5]: Entering directory `/home/jason/moab/test/dist/moab-3.99/_build/tools/iMesh'
Making all in .
make[6]: Entering directory `/home/jason/moab/test/dist/moab-3.99/_build/tools/iMesh'
/bin/sh ../../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DSRCDIR=../../../tools/iMesh -I. -I../../../tools/iMesh -I../.. -I../../.. -I../.. -I. -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -O2 -DNDEBUG -MT iMesh_MOAB.lo -MD -MP -MF .deps/iMesh_MOAB.Tpo -c -o iMesh_MOAB.lo ../../../tools/iMesh/iMesh_MOAB.cpp
c++ -DHAVE_CONFIG_H -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DSRCDIR=../../../tools/iMesh -I. -I../../../tools/iMesh -I../.. -I../../.. -I../.. -I. -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -O2 -DNDEBUG -MT iMesh_MOAB.lo -MD -MP -MF .deps/iMesh_MOAB.Tpo -c ../../../tools/iMesh/iMesh_MOAB.cpp -o iMesh_MOAB.o
../../../tools/iMesh/iMesh_MOAB.cpp: In function ‘void imesh_getentsbytagsrec_(iMesh_Instance_Private*, iBase_EntitySetHandle_Private*, int, int, iBase_TagHandle_Private* const*, const char* const*, int, int, iBase_EntityHandle_Private***, int*, int*, int*)’:
../../../tools/iMesh/iMesh_MOAB.cpp:2770: warning: ‘result’ may be used uninitialized in this function
mv -f .deps/iMesh_MOAB.Tpo .deps/iMesh_MOAB.Plo
/bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o libiMesh.la -rpath /home/jason/moab/test/dist/moab-3.99/_inst/lib iMesh_MOAB.lo ../../libMOAB.la -lm
mkdir .libs
ar cru .libs/libiMesh.a iMesh_MOAB.o
ranlib .libs/libiMesh.a
creating libiMesh.la
(cd .libs && rm -f libiMesh.la && ln -s ../libiMesh.la libiMesh.la)
make[6]: Leaving directory `/home/jason/moab/test/dist/moab-3.99/_build/tools/iMesh'
make[5]: Leaving directory `/home/jason/moab/test/dist/moab-3.99/_build/tools/iMesh'
make[4]: Leaving directory `/home/jason/moab/test/dist/moab-3.99/_build/tools/iMesh'
Making all in mbperf
make[4]: Entering directory `/home/jason/moab/test/dist/moab-3.99/_build/tools/mbperf'
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I../../../tools/mbperf -I../.. -I../../.. -I../.. -I../../../tools/iMesh -I../../../tools/iMesh/SIDL/mserver -I../iMesh/SIDL/mserver -I../iMesh -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -O2 -DNDEBUG -MT mbperf.o -MD -MP -MF .deps/mbperf.Tpo -c -o mbperf.o ../../../tools/mbperf/mbperf.cpp
mv -f .deps/mbperf.Tpo .deps/mbperf.Po
/bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o mbperf mbperf.o ../../libMOAB.la -lm
mkdir .libs
c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o mbperf mbperf.o ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I../../../tools/mbperf -I../.. -I../../.. -I../.. -I../../../tools/iMesh -I../../../tools/iMesh/SIDL/mserver -I../iMesh/SIDL/mserver -I../iMesh -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -O2 -DNDEBUG -MT mbperf_iMesh.o -MD -MP -MF .deps/mbperf_iMesh.Tpo -c -o mbperf_iMesh.o ../../../tools/mbperf/mbperf_iMesh.cpp
mv -f .deps/mbperf_iMesh.Tpo .deps/mbperf_iMesh.Po
/bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o mbperf_iMesh mbperf_iMesh.o ../../libMOAB.la ../iMesh/libiMesh.la -lm
c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o mbperf_iMesh mbperf_iMesh.o ../../.libs/libMOAB.a ../iMesh/.libs/libiMesh.a /home/jason/moab/test/dist/moab-3.99/_build/.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm
make[4]: Leaving directory `/home/jason/moab/test/dist/moab-3.99/_build/tools/mbperf'
Making all in dagmc
make[4]: Entering directory `/home/jason/moab/test/dist/moab-3.99/_build/tools/dagmc'
/bin/sh ../../libtool --tag=CXX --mode=compile c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -I. -I../../../tools/dagmc -I../.. -I../../.. -I../.. -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -O2 -DNDEBUG -MT DagMC.lo -MD -MP -MF .deps/DagMC.Tpo -c -o DagMC.lo ../../../tools/dagmc/DagMC.cpp
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -I. -I../../../tools/dagmc -I../.. -I../../.. -I../.. -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -O2 -DNDEBUG -MT DagMC.lo -MD -MP -MF .deps/DagMC.Tpo -c ../../../tools/dagmc/DagMC.cpp -o DagMC.o
../../../tools/dagmc/DagMC.cpp: In member function ‘void DagMC::write_log(std::string, bool)’:
../../../tools/dagmc/DagMC.cpp:1062: warning: unused variable ‘success’
mv -f .deps/DagMC.Tpo .deps/DagMC.Plo
/bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o libdagmc.la -rpath /home/jason/moab/test/dist/moab-3.99/_inst/lib DagMC.lo -lm
mkdir .libs
ar cru .libs/libdagmc.a DagMC.o
ranlib .libs/libdagmc.a
creating libdagmc.la
(cd .libs && rm -f libdagmc.la && ln -s ../libdagmc.la libdagmc.la)
make[4]: Leaving directory `/home/jason/moab/test/dist/moab-3.99/_build/tools/dagmc'
make[4]: Entering directory `/home/jason/moab/test/dist/moab-3.99/_build/tools'
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -I. -I../../tools -I.. -I../.. -I.. -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -O2 -DNDEBUG -MT convert.o -MD -MP -MF .deps/convert.Tpo -c -o convert.o ../../tools/convert.cpp
mv -f .deps/convert.Tpo .deps/convert.Po
/bin/sh ../libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o mbconvert convert.o ../libMOAB.la -lm
mkdir .libs
c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o mbconvert convert.o ../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -I. -I../../tools -I.. -I../.. -I.. -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -O2 -DNDEBUG -MT makeops.o -MD -MP -MF .deps/makeops.Tpo -c -o makeops.o ../../tools/makeops.cpp
mv -f .deps/makeops.Tpo .deps/makeops.Po
/bin/sh ../libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o hexmodops makeops.o ../libMOAB.la -lm
c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o hexmodops makeops.o ../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -I. -I../../tools -I.. -I../.. -I.. -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -O2 -DNDEBUG -MT measure.o -MD -MP -MF .deps/measure.Tpo -c -o measure.o ../../tools/measure.cpp
mv -f .deps/measure.Tpo .deps/measure.Po
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -I. -I../../tools -I.. -I../.. -I.. -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -O2 -DNDEBUG -MT size.o -MD -MP -MF .deps/size.Tpo -c -o size.o ../../tools/size.cpp
mv -f .deps/size.Tpo .deps/size.Po
/bin/sh ../libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o mbsize measure.o size.o ../libMOAB.la -lm
c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o mbsize measure.o size.o ../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -I. -I../../tools -I.. -I../.. -I.. -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -O2 -DNDEBUG -MT skin.o -MD -MP -MF .deps/skin.Tpo -c -o skin.o ../../tools/skin.cpp
mv -f .deps/skin.Tpo .deps/skin.Po
/bin/sh ../libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o mbskin skin.o ../libMOAB.la -lm
c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o mbskin skin.o ../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -I. -I../../tools -I.. -I../.. -I.. -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -O2 -DNDEBUG -MT parse.o -MD -MP -MF .deps/parse.Tpo -c -o parse.o ../../tools/parse.cpp
mv -f .deps/parse.Tpo .deps/parse.Po
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -I. -I../../tools -I.. -I../.. -I.. -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -O2 -DNDEBUG -MT propagate_tags.o -MD -MP -MF .deps/propagate_tags.Tpo -c -o propagate_tags.o ../../tools/propagate_tags.cpp
../../tools/propagate_tags.cpp: In function ‘int main(int, char**)’:
../../tools/propagate_tags.cpp:193: warning: ‘data_tag.TagSpec::handle’ may be used uninitialized in this function
../../tools/propagate_tags.cpp:193: warning: ‘data_tag.TagSpec::value’ may be used uninitialized in this function
mv -f .deps/propagate_tags.Tpo .deps/propagate_tags.Po
/bin/sh ../libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o mbtagprop parse.o propagate_tags.o ../libMOAB.la -lm
c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o mbtagprop parse.o propagate_tags.o ../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -I. -I../../tools -I.. -I../.. -I.. -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -O2 -DNDEBUG -MT SphereDecomp.o -MD -MP -MF .deps/SphereDecomp.Tpo -c -o SphereDecomp.o ../../tools/SphereDecomp.cpp
mv -f .deps/SphereDecomp.Tpo .deps/SphereDecomp.Po
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -I. -I../../tools -I.. -I../.. -I.. -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -O2 -DNDEBUG -MT main.o -MD -MP -MF .deps/main.Tpo -c -o main.o ../../tools/main.cpp
mv -f .deps/main.Tpo .deps/main.Po
/bin/sh ../libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o spheredecomp SphereDecomp.o main.o ../libMOAB.la -lm
c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o spheredecomp SphereDecomp.o main.o ../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -I. -I../../tools -I.. -I../.. -I.. -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -O2 -DNDEBUG -MT surfplot.o -MD -MP -MF .deps/surfplot.Tpo -c -o surfplot.o ../../tools/surfplot.cpp
mv -f .deps/surfplot.Tpo .deps/surfplot.Po
/bin/sh ../libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o mbsurfplot surfplot.o ../libMOAB.la -lm
c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o mbsurfplot surfplot.o ../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -I. -I../../tools -I.. -I../.. -I.. -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -O2 -DNDEBUG -MT gsets.o -MD -MP -MF .deps/gsets.Tpo -c -o gsets.o ../../tools/gsets.cc
mv -f .deps/gsets.Tpo .deps/gsets.Po
/bin/sh ../libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o mbgsets gsets.o ../libMOAB.la -lm
c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o mbgsets gsets.o ../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm
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Making all in doc
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make moab_test homxform_test scdseq_test tqdcfr test_adj seq_man_test geom_util_test xform_test obb_test vtk_test adaptive_kd_tree_tests bsp_tree_test file_options_test kd_tree_test var_len_test var_len_test_no_template tag_test mesh_set_test cub_file_test exodus_test mbcn_test kd_tree_tool kd_tree_time
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c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT MBTest.o -MD -MP -MF .deps/MBTest.Tpo -c -o MBTest.o ../MBTest.cpp
../MBTest.cpp: In function ‘MBErrorCode mb_temporary_test(MBInterface*)’:
../MBTest.cpp:659: warning: unused variable ‘num_adj’
mv -f .deps/MBTest.Tpo .deps/MBTest.Po
gunzip -c ../test/mb_big_test.g.gz > test/mb_big_test.g
gunzip -c ../test/cell1.gen.gz > test/cell1.gen
gunzip -c ../test/cell2.gen.gz > test/cell2.gen
/bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o moab_test MBTest.o ./libMOAB.la -lm
c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o moab_test MBTest.o ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -DTEST -Wall -pipe -pedantic -O2 -DNDEBUG -Wall -pipe -pedantic -O2 -DNDEBUG -MT homxform_test-HomXform.o -MD -MP -MF .deps/homxform_test-HomXform.Tpo -c -o homxform_test-HomXform.o `test -f 'HomXform.cpp' || echo '../'`HomXform.cpp
mv -f .deps/homxform_test-HomXform.Tpo .deps/homxform_test-HomXform.Po
/bin/sh ./libtool --tag=CXX --mode=link c++ -DTEST -Wall -pipe -pedantic -O2 -DNDEBUG -Wall -pipe -pedantic -O2 -DNDEBUG -o homxform_test homxform_test-HomXform.o ./libMOAB.la -lm
c++ -DTEST -Wall -pipe -pedantic -O2 -DNDEBUG -Wall -pipe -pedantic -O2 -DNDEBUG -o homxform_test homxform_test-HomXform.o ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT scdseq_test.o -MD -MP -MF .deps/scdseq_test.Tpo -c -o scdseq_test.o ../scdseq_test.cpp
../scdseq_test.cpp: In function ‘MBErrorCode evaluate_element_sequence(StructuredElementSeq*)’:
../scdseq_test.cpp:210: warning: ‘ktmp’ may be used uninitialized in this function
../scdseq_test.cpp:210: warning: ‘jtmp’ may be used uninitialized in this function
../scdseq_test.cpp:210: warning: ‘itmp’ may be used uninitialized in this function
../scdseq_test.cpp: In function ‘MBErrorCode evaluate_vertex_sequence(ScdVertexData*)’:
../scdseq_test.cpp:153: warning: ‘ktmp’ may be used uninitialized in this function
../scdseq_test.cpp:153: warning: ‘jtmp’ may be used uninitialized in this function
../scdseq_test.cpp:153: warning: ‘itmp’ may be used uninitialized in this function
mv -f .deps/scdseq_test.Tpo .deps/scdseq_test.Po
/bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o scdseq_test scdseq_test.o ./libMOAB.la -lm
c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o scdseq_test scdseq_test.o ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -DTEST_TQDCFR -Wall -pipe -pedantic -O2 -DNDEBUG -Wall -pipe -pedantic -O2 -DNDEBUG -MT tqdcfr-Tqdcfr.o -MD -MP -MF .deps/tqdcfr-Tqdcfr.Tpo -c -o tqdcfr-Tqdcfr.o `test -f 'Tqdcfr.cpp' || echo '../'`Tqdcfr.cpp
mv -f .deps/tqdcfr-Tqdcfr.Tpo .deps/tqdcfr-Tqdcfr.Po
/bin/sh ./libtool --tag=CXX --mode=link c++ -DTEST_TQDCFR -Wall -pipe -pedantic -O2 -DNDEBUG -Wall -pipe -pedantic -O2 -DNDEBUG -o tqdcfr tqdcfr-Tqdcfr.o ./libMOAB.la -lm
c++ -DTEST_TQDCFR -Wall -pipe -pedantic -O2 -DNDEBUG -Wall -pipe -pedantic -O2 -DNDEBUG -o tqdcfr tqdcfr-Tqdcfr.o ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT test_adj.o -MD -MP -MF .deps/test_adj.Tpo -c -o test_adj.o ../test_adj.cpp
mv -f .deps/test_adj.Tpo .deps/test_adj.Po
/bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o test_adj test_adj.o ./libMOAB.la -lm
c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o test_adj test_adj.o ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT TestTypeSequenceManager.o -MD -MP -MF .deps/TestTypeSequenceManager.Tpo -c -o TestTypeSequenceManager.o ../TestTypeSequenceManager.cpp
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/bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o seq_man_test TestTypeSequenceManager.o ./libMOAB.la -lm
c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o seq_man_test TestTypeSequenceManager.o ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT GeomUtilTests.o -MD -MP -MF .deps/GeomUtilTests.Tpo -c -o GeomUtilTests.o ../GeomUtilTests.cpp
mv -f .deps/GeomUtilTests.Tpo .deps/GeomUtilTests.Po
/bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o geom_util_test GeomUtilTests.o ./libMOAB.la -lm
c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o geom_util_test GeomUtilTests.o ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -DTEST -Wall -pipe -pedantic -O2 -DNDEBUG -Wall -pipe -pedantic -O2 -DNDEBUG -MT xform_test-MBAffineXform.o -MD -MP -MF .deps/xform_test-MBAffineXform.Tpo -c -o xform_test-MBAffineXform.o `test -f 'MBAffineXform.cpp' || echo '../'`MBAffineXform.cpp
mv -f .deps/xform_test-MBAffineXform.Tpo .deps/xform_test-MBAffineXform.Po
/bin/sh ./libtool --tag=CXX --mode=link c++ -DTEST -Wall -pipe -pedantic -O2 -DNDEBUG -Wall -pipe -pedantic -O2 -DNDEBUG -o xform_test xform_test-MBAffineXform.o ./libMOAB.la -lm
c++ -DTEST -Wall -pipe -pedantic -O2 -DNDEBUG -Wall -pipe -pedantic -O2 -DNDEBUG -o xform_test xform_test-MBAffineXform.o ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT OBBTest.o -MD -MP -MF .deps/OBBTest.Tpo -c -o OBBTest.o ../OBBTest.cpp
mv -f .deps/OBBTest.Tpo .deps/OBBTest.Po
/bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o obb_test OBBTest.o ./libMOAB.la -lm
c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o obb_test OBBTest.o ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT VtkTest.o -MD -MP -MF .deps/VtkTest.Tpo -c -o VtkTest.o ../VtkTest.cpp
mv -f .deps/VtkTest.Tpo .deps/VtkTest.Po
/bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o vtk_test VtkTest.o ./libMOAB.la -lm
c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o vtk_test VtkTest.o ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT adaptive_kd_tree_tests.o -MD -MP -MF .deps/adaptive_kd_tree_tests.Tpo -c -o adaptive_kd_tree_tests.o ../adaptive_kd_tree_tests.cpp
../adaptive_kd_tree_tests.cpp: In function ‘bool create_simple_2d_tree(MBAdaptiveKDTree&, MBEntityHandle&, MBEntityHandle*)’:
../adaptive_kd_tree_tests.cpp:416: warning: unused variable ‘mb’
mv -f .deps/adaptive_kd_tree_tests.Tpo .deps/adaptive_kd_tree_tests.Po
/bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o adaptive_kd_tree_tests adaptive_kd_tree_tests.o ./libMOAB.la -lm
c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o adaptive_kd_tree_tests adaptive_kd_tree_tests.o ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT bsp_tree_test.o -MD -MP -MF .deps/bsp_tree_test.Tpo -c -o bsp_tree_test.o ../bsp_tree_test.cpp
mv -f .deps/bsp_tree_test.Tpo .deps/bsp_tree_test.Po
/bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o bsp_tree_test bsp_tree_test.o ./libMOAB.la -lm
c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o bsp_tree_test bsp_tree_test.o ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DTEST -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT file_options_test-FileOptions.o -MD -MP -MF .deps/file_options_test-FileOptions.Tpo -c -o file_options_test-FileOptions.o `test -f 'FileOptions.cpp' || echo '../'`FileOptions.cpp
mv -f .deps/file_options_test-FileOptions.Tpo .deps/file_options_test-FileOptions.Po
/bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o file_options_test file_options_test-FileOptions.o -lm
c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o file_options_test file_options_test-FileOptions.o -lm
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT kd_tree_test.o -MD -MP -MF .deps/kd_tree_test.Tpo -c -o kd_tree_test.o ../kd_tree_test.cpp
../kd_tree_test.cpp: In function ‘int main()’:
../kd_tree_test.cpp:71: warning: unused variable ‘volume’
../kd_tree_test.cpp:160: warning: unused variable ‘volume’
../kd_tree_test.cpp:78: warning: unused variable ‘num_leaves’
mv -f .deps/kd_tree_test.Tpo .deps/kd_tree_test.Po
/bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o kd_tree_test kd_tree_test.o ./libMOAB.la -lm
c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o kd_tree_test kd_tree_test.o ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT VarLenTagTest.o -MD -MP -MF .deps/VarLenTagTest.Tpo -c -o VarLenTagTest.o ../VarLenTagTest.cpp
mv -f .deps/VarLenTagTest.Tpo .deps/VarLenTagTest.Po
/bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o var_len_test VarLenTagTest.o ./libMOAB.la -lm
c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o var_len_test VarLenTagTest.o ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -UTEMPLATE_SPECIALIZATION -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT var_len_test_no_template-VarLenTagTest.o -MD -MP -MF .deps/var_len_test_no_template-VarLenTagTest.Tpo -c -o var_len_test_no_template-VarLenTagTest.o `test -f 'VarLenTagTest.cpp' || echo '../'`VarLenTagTest.cpp
mv -f .deps/var_len_test_no_template-VarLenTagTest.Tpo .deps/var_len_test_no_template-VarLenTagTest.Po
/bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o var_len_test_no_template var_len_test_no_template-VarLenTagTest.o ./libMOAB.la -lm
c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o var_len_test_no_template var_len_test_no_template-VarLenTagTest.o ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT TagTest.o -MD -MP -MF .deps/TagTest.Tpo -c -o TagTest.o ../TagTest.cpp
mv -f .deps/TagTest.Tpo .deps/TagTest.Po
/bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o tag_test TagTest.o ./libMOAB.la -lm
c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o tag_test TagTest.o ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT Test_MBMeshSet.o -MD -MP -MF .deps/Test_MBMeshSet.Tpo -c -o Test_MBMeshSet.o ../Test_MBMeshSet.cpp
mv -f .deps/Test_MBMeshSet.Tpo .deps/Test_MBMeshSet.Po
/bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o mesh_set_test Test_MBMeshSet.o ./libMOAB.la -lm
c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o mesh_set_test Test_MBMeshSet.o ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT cub_file_test.o -MD -MP -MF .deps/cub_file_test.Tpo -c -o cub_file_test.o ../cub_file_test.cc
mv -f .deps/cub_file_test.Tpo .deps/cub_file_test.Po
/bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o cub_file_test cub_file_test.o ./libMOAB.la -lm
c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o cub_file_test cub_file_test.o ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT exodus_test.o -MD -MP -MF .deps/exodus_test.Tpo -c -o exodus_test.o ../exodus_test.cc
mv -f .deps/exodus_test.Tpo .deps/exodus_test.Po
/bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o exodus_test exodus_test.o ./libMOAB.la -lm
c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o exodus_test exodus_test.o ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DSRCDIR=.. -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT mbcn_test-MBCN.o -MD -MP -MF .deps/mbcn_test-MBCN.Tpo -c -o mbcn_test-MBCN.o `test -f 'MBCN.cpp' || echo '../'`MBCN.cpp
mv -f .deps/mbcn_test-MBCN.Tpo .deps/mbcn_test-MBCN.Po
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DSRCDIR=.. -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT mbcn_test-mbcn_test.o -MD -MP -MF .deps/mbcn_test-mbcn_test.Tpo -c -o mbcn_test-mbcn_test.o `test -f 'mbcn_test.cc' || echo '../'`mbcn_test.cc
../mbcn_test.cc:554: warning: ‘void do_test_side_number_2d(MBEntityType, int)’ defined but not used
mv -f .deps/mbcn_test-mbcn_test.Tpo .deps/mbcn_test-mbcn_test.Po
/bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o mbcn_test mbcn_test-MBCN.o mbcn_test-mbcn_test.o -lm
c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o mbcn_test mbcn_test-MBCN.o mbcn_test-mbcn_test.o -lm
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT kd_tree_tool.o -MD -MP -MF .deps/kd_tree_tool.Tpo -c -o kd_tree_tool.o ../kd_tree_tool.cpp
mv -f .deps/kd_tree_tool.Tpo .deps/kd_tree_tool.Po
/bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o kd_tree_tool kd_tree_tool.o ./libMOAB.la -lm
c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o kd_tree_tool kd_tree_tool.o ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I.. -I. -I../mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=.. -Wall -pipe -pedantic -O2 -DNDEBUG -MT kd_tree_time.o -MD -MP -MF .deps/kd_tree_time.Tpo -c -o kd_tree_time.o ../kd_tree_time.cpp
mv -f .deps/kd_tree_time.Tpo .deps/kd_tree_time.Po
/bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o kd_tree_time kd_tree_time.o ./libMOAB.la -lm
c++ -Wall -pipe -pedantic -O2 -DNDEBUG -o kd_tree_time kd_tree_time.o ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm
make[3]: Leaving directory `/home/jason/moab/test/dist/moab-3.99/_build'
make check-TESTS
make[3]: Entering directory `/home/jason/moab/test/dist/moab-3.99/_build'
Size of mConnMap = 10512
Size of mUpConnMap = 59904
Size of MBCN = 1
MB TEST PROGRAM:
Failed to load input file: ../test/mbtest1.g
Exodus reader supports subset read only by block ID.
/bin/sh: line 4: 7972 Aborted ${dir}$tst
FAIL: moab_test
All tests passed.
PASS: homxform_test
All tests passed.
PASS: scdseq_test
Usage: tqdcfr <cub_file_name>
Success.
Success.
PASS: tqdcfr
PASS: test_adj
Running test_basic ...
Running test_lower_bound ...
Running test_upper_bound ...
Running test_find ...
Running test_get_entities ...
Running test_insert_sequence_merge ...
Running test_insert_sequence_nomerge ...
Running test_remove_sequence ...
Running test_replace_subsequence ...
Running test_erase ...
Running test_find_free_handle ...
Running test_find_free_sequence ...
Running test_is_free_sequence ...
Running regression_svn1952 ...
Running regression_svn1958 ...
Running regression_svn1960 ...
ALL TESTS PASSED
PASS: seq_man_test
Running test_box_plane_overlap ...
Running test_box_linear_elem_overlap_tri ...
Running test_box_linear_elem_overlap_tet ...
Running test_box_linear_elem_overlap_hex ...
Running test_box_tri_overlap ...
Running test_box_tet_overlap ...
Running test_box_hex_overlap ...
Running test_ray_tri_intersect ...
Running test_closest_location_on_tri ...
Running test_closest_location_on_polygon ...
Running test_segment_box_intersect ...
Running test_closest_location_on_box ...
PASS: geom_util_test
PASS: xform_test
PASS: obb_test
API failed at line 848: MB_FAILURE (13)
Check failed at line 1018: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1018: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1018: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1018: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1018: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1018: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1018: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1018: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1018: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1018: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1018: bval
Check failed at line 438: rval1
API failed at line 848: MB_FAILURE (13)
Check failed at line 1018: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1018: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1018: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1034: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1034: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1034: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1034: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1045: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1045: bval
API failed at line 848: MB_FAILURE (13)
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API failed at line 848: MB_FAILURE (13)
Check failed at line 1199: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1199: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1199: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1199: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1199: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1199: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1199: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1199: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1199: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1199: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1199: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1199: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1199: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1199: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1199: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1199: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1199: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1199: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1199: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1199: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1199: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1199: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1199: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1199: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1199: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1199: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1199: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1199: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1199: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1199: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1199: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1199: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1199: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1199: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1199: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1199: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1199: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1199: bval
API failed at line 848: MB_FAILURE (13)
Check failed at line 1199: bval
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Check failed at line 1199: bval
API failed at line 848: MB_FAILURE (13)
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Check failed at line 1199: bval
API failed at line 1320: MB_FAILURE (13)
Testing edge2...
Testing edge3...
Testing tri3...
Testing tri6...
Testing quad4...
Testing quad8...
Testing polygon...
Testing tet4...
Testing tet10...
Testing hex8...
Testing hex20...
Testing wedge...
Testing pyramid...
Testing structured_points_2d...
Testing structured_grid_2d...
Testing rectilinear_grid_2d...
Testing structured_points_3d...
Testing structured_grid_3d...
Testing rectilinear_grid_3d...
Testing scalar_attrib_1_bit...
Testing scalar_attrib_1_uchar...
Testing scalar_attrib_1_char...
Testing scalar_attrib_1_ushort...
Testing scalar_attrib_1_short...
Testing scalar_attrib_1_uint...
Testing scalar_attrib_1_int...
Testing scalar_attrib_1_ulong...
Testing scalar_attrib_1_long...
Testing scalar_attrib_1_float...
Testing scalar_attrib_1_double...
Testing scalar_attrib_4_bit...
Testing scalar_attrib_4_uchar...
Testing scalar_attrib_4_char...
Testing scalar_attrib_4_ushort...
Testing scalar_attrib_4_short...
Testing scalar_attrib_4_uint...
Testing scalar_attrib_4_int...
Testing scalar_attrib_4_ulong...
Testing scalar_attrib_4_long...
Testing scalar_attrib_4_float...
Testing scalar_attrib_4_double...
Testing vector_attrib_bit...
Testing vector_attrib_uchar...
Testing vector_attrib_char...
Testing vector_attrib_ushort...
Testing vector_attrib_short...
Testing vector_attrib_uint...
Testing vector_attrib_int...
Testing vector_attrib_ulong...
Testing vector_attrib_long...
Testing vector_attrib_float...
Testing vector_attrib_double...
Testing tensor_attrib_uchar...
Testing tensor_attrib_char...
Testing tensor_attrib_ushort...
Testing tensor_attrib_short...
Testing tensor_attrib_uint...
Testing tensor_attrib_int...
Testing tensor_attrib_ulong...
Testing tensor_attrib_long...
Testing tensor_attrib_float...
Testing tensor_attrib_double...
Testing subset...
FAILED TESTS:
edge2
edge3
tri3
tri6
quad4
quad8
polygon
tet4
tet10
hex8
hex20
wedge
pyramid
structured_points_2d
structured_grid_2d
rectilinear_grid_2d
structured_points_3d
structured_grid_3d
rectilinear_grid_3d
scalar_attrib_1_bit
scalar_attrib_1_uchar
scalar_attrib_1_char
scalar_attrib_1_ushort
scalar_attrib_1_short
scalar_attrib_1_uint
scalar_attrib_1_int
scalar_attrib_1_ulong
scalar_attrib_1_long
scalar_attrib_1_float
scalar_attrib_1_double
scalar_attrib_4_bit
scalar_attrib_4_uchar
scalar_attrib_4_char
scalar_attrib_4_ushort
scalar_attrib_4_short
scalar_attrib_4_uint
scalar_attrib_4_int
scalar_attrib_4_ulong
scalar_attrib_4_long
scalar_attrib_4_float
scalar_attrib_4_double
vector_attrib_bit
vector_attrib_uchar
vector_attrib_char
vector_attrib_ushort
vector_attrib_short
vector_attrib_uint
vector_attrib_int
vector_attrib_ulong
vector_attrib_long
vector_attrib_float
vector_attrib_double
tensor_attrib_uchar
tensor_attrib_char
tensor_attrib_ushort
tensor_attrib_short
tensor_attrib_uint
tensor_attrib_int
tensor_attrib_ulong
tensor_attrib_long
tensor_attrib_float
tensor_attrib_double
subset
63 of 63 tests failed
FAIL: vtk_test
PASS: adaptive_kd_tree_tests
Running test_iterator ...
Running test_box_iterator ...
Running test_tree_create ...
Running test_box_tree_create ...
Running test_leaf_containing_point_bounded_tree ...
Running test_leaf_containing_point_unbounded_tree ...
Running test_merge_leaf ...
PASS: bsp_tree_test
PASS: file_options_test
/bin/sh: line 4: 8133 Segmentation fault ${dir}$tst
FAIL: kd_tree_test
Running test_valid_struct ...
Running test_inline ...
Running test_non_inline ...
Running test_resize_ii ...
Running test_resize_in ...
Running test_resize_ni ...
Running test_resize_nn ...
PASS: var_len_test
Running test_valid_struct ...
Running test_inline ...
Running test_non_inline ...
Running test_resize_ii ...
Running test_resize_in ...
Running test_resize_ni ...
Running test_resize_nn ...
PASS: var_len_test_no_template
Running test_create_tag ...
Running test_invalid_tag_size ...
Running test_get_set_sparse_int ...
Running test_get_set_dense_int ...
Running test_get_set_dense_double ...
Running test_get_set_bit ...
Running test_get_by_tag ...
Running test_get_by_tag_value ...
Running test_mesh_value ...
Running test_get_pointers_sparse ...
Running test_get_pointers_dense ...
Running test_set_pointers_sparse ...
Running test_set_pointers_dense ...
Running test_get_entity_tags ...
Running test_delete_sparse_tag ...
Running test_delete_dense_tag ...
Running test_delete_mesh_tag ...
Running test_delete_sparse_data ...
Running test_delete_dense_data ...
Running test_delete_bit_data ...
Running test_create_variable_length_tag ...
Running test_get_set_variable_length_sparse ...
Running test_get_set_variable_length_dense ...
Running test_get_set_variable_length_mesh ...
Running regression_one_entity_by_var_tag ...
Running regression_tag_on_nonexistent_entity ...
PASS: tag_test
Running test_add_entities_ordered ...
Running test_add_entities_set ...
Running test_add_entities_ordered_tracking ...
Running test_add_entities_set_tracking ...
Running test_remove_entities_ordered ...
Running test_remove_entities_set ...
Running test_remove_entities_ordered_tracking ...
Running test_remove_entities_set_tracking ...
Running test_entities_by_type_ordered ...
Running test_entities_by_type_set ...
Running test_entities_by_dim_ordered ...
Running test_entities_by_dim_set ...
Running test_subtract_set_set ...
Running test_subtract_set_ordered ...
Running test_subtract_ordered_set ...
Running test_subtract_ordered_ordered ...
Running test_subtract_set_set_tracking ...
Running test_subtract_set_ordered_tracking ...
Running test_subtract_ordered_set_tracking ...
Running test_subtract_ordered_ordered_tracking ...
Running test_itersect_set_set ...
Running test_itersect_set_ordered ...
Running test_itersect_ordered_set ...
Running test_itersect_ordered_ordered ...
Running test_itersect_set_set_tracking ...
Running test_itersect_set_ordered_tracking ...
Running test_itersect_ordered_set_tracking ...
Running test_itersect_ordered_ordered_tracking ...
Running test_unite_set_set ...
Running test_unite_set_ordered ...
Running test_unite_ordered_set ...
Running test_unite_ordered_ordered ...
Running test_unite_set_set_tracking ...
Running test_unite_set_ordered_tracking ...
Running test_unite_ordered_set_tracking ...
Running test_unite_ordered_ordered_tracking ...
Running test_contains_entities_ordered ...
Running test_contains_entities_set ...
Running test_clear_ordered ...
Running test_clear_set ...
Running test_clear_ordered_tracking ...
Running test_clear_set_tracking ...
ALL TESTS PASSED
PASS: mesh_set_test
Running test_vertices ...
Running test_edges ...
Running test_quads ...
Running test_hexes ...
Running test_geometric_topology ...
Running test_geometric_sets ...
Running test_blocks ...
Running test_side_sets ...
Running test_node_sets ...
Running test_file_set ...
Running test_tri6 ...
Running test_tri7 ...
Running test_quad5 ...
Running test_quad8 ...
Running test_quad9 ...
Running test_tet8 ...
Running test_tet10 ...
Running test_tet14 ...
Running test_hex9 ...
Running test_hex20 ...
Running test_hex27 ...
Running test_multiple_files ...
PASS: cub_file_test
Running test_tri6 ...
test_tri6: TERMINATED (signal 11)
Running test_tri7 ...
test_tri7: TERMINATED (signal 11)
Running test_quad5 ...
test_quad5: TERMINATED (signal 11)
Running test_quad8 ...
test_quad8: TERMINATED (signal 11)
Running test_quad9 ...
test_quad9: TERMINATED (signal 11)
Running test_tet8 ...
test_tet8: TERMINATED (signal 11)
Running test_tet10 ...
test_tet10: TERMINATED (signal 11)
Running test_tet14 ...
test_tet14: TERMINATED (signal 11)
Running test_hex9 ...
test_hex9: TERMINATED (signal 11)
Running test_hex20 ...
test_hex20: TERMINATED (signal 11)
Running test_hex27 ...
test_hex27: TERMINATED (signal 11)
FAIL: exodus_test
Running test_dimension_pair ...
Running test_type_names ...
Running test_dimension ...
Running test_vertices_per_entity ...
Running test_num_sub_entities ...
Running test_sub_entity_type_vtx ...
Running test_sub_entity_type_edge ...
Running test_sub_entity_type_tri ...
Running test_sub_entity_type_quad ...
Running test_sub_entity_type_tet ...
Running test_sub_entity_type_pyr ...
Running test_sub_entity_type_pri ...
Running test_sub_entity_type_knife ...
Running test_sub_entity_type_hex ...
Running test_sub_entity_indices_vtx ...
Running test_sub_entity_indices_edge ...
Running test_sub_entity_indices_tri ...
Running test_sub_entity_indices_quad ...
Running test_sub_entity_indices_tet ...
Running test_sub_entity_indices_pyr ...
Running test_sub_entity_indices_pri ...
Running test_sub_entity_indices_hex ...
Running test_side_number_tri ...
Running test_side_number_quad ...
Running test_side_number_tet ...
Running test_side_number_pyr ...
Running test_side_number_pri ...
Running test_side_number_hex ...
Running test_opposite_side_tri ...
Running test_opposite_side_quad ...
Running test_opposite_side_tet ...
Running test_opposite_side_hex ...
Running test_has_mid_nodes_edge ...
Running test_has_mid_nodes_tri ...
Running test_has_mid_nodes_quad ...
Running test_has_mid_nodes_tet ...
Running test_has_mid_nodes_pyr ...
Running test_has_mid_nodes_pri ...
Running test_has_mid_nodes_knife ...
Running test_has_mid_nodes_hex ...
Running test_sub_entity_nodes_tri_edges ...
Running test_sub_entity_nodes_quad_edges ...
Running test_sub_entity_nodes_tet_edges ...
Running test_sub_entity_nodes_tet_faces ...
Running test_sub_entity_nodes_pyr_edges ...
Running test_sub_entity_nodes_pyr_faces ...
Running test_sub_entity_nodes_pri_edges ...
Running test_sub_entity_nodes_pri_faces ...
Running test_sub_entity_nodes_kni_edges ...
Running test_sub_entity_nodes_kni_faces ...
Running test_sub_entity_nodes_hex_edges ...
Running test_sub_entity_nodes_hex_faces ...
Running test_ho_node_parent ...
Running test_ho_node_index ...
PASS: mbcn_test
====================
4 of 21 tests failed
====================
make[3]: *** [check-TESTS] Error 1
make[3]: Leaving directory `/home/jason/moab/test/dist/moab-3.99/_build'
make[2]: *** [check-am] Error 2
make[2]: Leaving directory `/home/jason/moab/test/dist/moab-3.99/_build'
make[1]: *** [check-recursive] Error 1
make[1]: Leaving directory `/home/jason/moab/test/dist/moab-3.99/_build'
make: *** [distcheck] Error 2
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