[MOAB-dev] MOAB check for *x86* failed.

[Nightly Test]

Making check in mhdf
make[1]: Entering directory `/home/jason/moab/test/x86/mhdf'
make[1]: Nothing to be done for `check'.
make[1]: Leaving directory `/home/jason/moab/test/x86/mhdf'
Making check in .
make[1]: Entering directory `/home/jason/moab/test/x86'
make  moab_test homxform_test scdseq_test tqdcfr test_adj seq_man_test geom_util_test xform_test obb_test vtk_test adaptive_kd_tree_tests bsp_tree_test file_options_test kd_tree_test var_len_test var_len_test_no_template tag_test mesh_set_test cub_file_test exodus_test mbcn_test kd_tree_tool kd_tree_time
make[2]: Entering directory `/home/jason/moab/test/x86'
make[2]: `homxform_test' is up to date.
make[2]: `scdseq_test' is up to date.
make[2]: `tqdcfr' is up to date.
make[2]: `test_adj' is up to date.
make[2]: `seq_man_test' is up to date.
make[2]: `geom_util_test' is up to date.
make[2]: `xform_test' is up to date.
make[2]: `obb_test' is up to date.
make[2]: `vtk_test' is up to date.
make[2]: `adaptive_kd_tree_tests' is up to date.
make[2]: `bsp_tree_test' is up to date.
make[2]: `file_options_test' is up to date.
make[2]: `kd_tree_test' is up to date.
make[2]: `var_len_test' is up to date.
make[2]: `var_len_test_no_template' is up to date.
make[2]: `tag_test' is up to date.
make[2]: `mesh_set_test' is up to date.
make[2]: `cub_file_test' is up to date.
make[2]: `exodus_test' is up to date.
make[2]: `mbcn_test' is up to date.
make[2]: `kd_tree_tool' is up to date.
make[2]: `kd_tree_time' is up to date.
make[2]: Leaving directory `/home/jason/moab/test/x86'
make  check-TESTS
make[2]: Entering directory `/home/jason/moab/test/x86'
Size of mConnMap = 10512
Size of mUpConnMap = 59904
Size of MBCN = 1


MB TEST PROGRAM:

   mb_adjacent_vertex_test: Success
   mb_adjacencies_test: Success
   mb_upward_adjacencies_test: Success
   mb_vertex_coordinate_test: Success
   mb_vertex_tag_test: Success
   mb_bar_connectivity_test: Success
   mb_tri_connectivity_test: Success
   mb_quad_connectivity_test: Success
   mb_tet_connectivity_test: Success
   mb_temporary_test: Success
   mb_hex_connectivity_test: Success
   mb_mesh_sets_set_test: Success
   mb_mesh_sets_list_test: Success
   mb_mesh_set_parent_child_test: Success
   mb_mesh_set_set_appends: Success
   mb_mesh_set_list_appends: Success
   mb_mesh_set_root_appends: Success
   mb_tags_test: Success
   mb_dense_tag_test: Success
   mb_sparse_tag_test: Success
   mb_write_mesh_test: Success
   mb_delete_mesh_test: Success
   mb_meshset_tracking_test: Success
   mb_higher_order_test: Success
   mb_bit_tags_test: Success
   mb_entity_conversion_test: Success
   mb_forced_adjacencies_test: Success
   mb_canon_number_test: Success
   mb_poly_test: Success
   mb_range_test: Success
   mb_topo_util_test: Success
   mb_split_test: Success
   mb_range_seq_intersect_test: Success
   mb_poly_adjacency_test: Success
   mb_memory_use_test: Success
   mb_merge_test: ---Starting Merge Tests---

---Testing:"test/cell1.gen"---
Loaded test/cell1.gen
---Testing:"test/cell2.gen"---
Loaded test/cell2.gen
num hexes = 28
fl = 68 rl = 0
nodes.size() = 72
---Success---

coin_nodes.size() = 13
TIME: 1229.39 seconds.
Success
   mb_stress_test:     Beginning Stress Test . . .

        Reading elements
        Read 256000 entities in 8.69 seconds
        at 29459.2 elements per second.

        Transforming and copying elements
        Transformed and created 256000 entities in 75.09 seconds

        Creating meshset
        Created meshset with 512000 entities in 0 seconds

        Writing 512K element file . . .
        Wrote file with 512000 entities in 80.12 seconds
        Total time: 163.92 seconds.
Success

MB TEST SUMMARY: 
   Number Tests:           37
   Number Successful:      37
   Number Failed:          0

PASS: moab_test
All tests passed.
PASS: homxform_test
All tests passed.
PASS: scdseq_test
Usage: tqdcfr <cub_file_name>
Success.
Success.
PASS: tqdcfr
PASS: test_adj
Running test_basic ...
Running test_lower_bound ...
Running test_upper_bound ...
Running test_find ...
Running test_get_entities ...
Running test_insert_sequence_merge ...
Running test_insert_sequence_nomerge ...
Running test_remove_sequence ...
Running test_replace_subsequence ...
Running test_erase ...
Running test_find_free_handle ...
Running test_find_free_sequence ...
Running test_is_free_sequence ...
Running regression_svn1952 ...
Running regression_svn1958 ...
Running regression_svn1960 ...
ALL TESTS PASSED
PASS: seq_man_test
Running test_box_plane_overlap ...
Running test_box_linear_elem_overlap_tri ...
Running test_box_linear_elem_overlap_tet ...
Running test_box_linear_elem_overlap_hex ...
Running test_box_tri_overlap ...
Running test_box_tet_overlap ...
Running test_box_hex_overlap ...
Running test_ray_tri_intersect ...
Running test_closest_location_on_tri ...
Running test_closest_location_on_polygon ...
Running test_segment_box_intersect ...
Running test_closest_location_on_box ...
PASS: geom_util_test
PASS: xform_test
PASS: obb_test
Testing edge2...
Testing edge3...
Testing tri3...
Testing tri6...
Testing quad4...
Testing quad8...
Testing polygon...
Testing tet4...
Testing tet10...
Testing hex8...
Testing hex20...
Testing wedge...
Testing pyramid...
Testing structured_points_2d...
Testing structured_grid_2d...
Testing rectilinear_grid_2d...
Testing structured_points_3d...
Testing structured_grid_3d...
Testing rectilinear_grid_3d...
Testing scalar_attrib_1_bit...
Testing scalar_attrib_1_uchar...
Testing scalar_attrib_1_char...
Testing scalar_attrib_1_ushort...
Testing scalar_attrib_1_short...
Testing scalar_attrib_1_uint...
Testing scalar_attrib_1_int...
Testing scalar_attrib_1_ulong...
Testing scalar_attrib_1_long...
Testing scalar_attrib_1_float...
Testing scalar_attrib_1_double...
Testing scalar_attrib_4_bit...
Testing scalar_attrib_4_uchar...
Testing scalar_attrib_4_char...
Testing scalar_attrib_4_ushort...
Testing scalar_attrib_4_short...
Testing scalar_attrib_4_uint...
Testing scalar_attrib_4_int...
Testing scalar_attrib_4_ulong...
Testing scalar_attrib_4_long...
Testing scalar_attrib_4_float...
Testing scalar_attrib_4_double...
Testing vector_attrib_bit...
Testing vector_attrib_uchar...
Testing vector_attrib_char...
Testing vector_attrib_ushort...
Testing vector_attrib_short...
Testing vector_attrib_uint...
Testing vector_attrib_int...
Testing vector_attrib_ulong...
Testing vector_attrib_long...
Testing vector_attrib_float...
Testing vector_attrib_double...
Testing tensor_attrib_uchar...
Testing tensor_attrib_char...
Testing tensor_attrib_ushort...
Testing tensor_attrib_short...
Testing tensor_attrib_uint...
Testing tensor_attrib_int...
Testing tensor_attrib_ulong...
Testing tensor_attrib_long...
Testing tensor_attrib_float...
Testing tensor_attrib_double...
Testing subset...


63 tests passed

PASS: vtk_test
PASS: adaptive_kd_tree_tests
Running test_iterator ...
Running test_box_iterator ...
Running test_tree_create ...
Running test_box_tree_create ...
Running test_leaf_containing_point_bounded_tree ...
Running test_leaf_containing_point_unbounded_tree ...
Running test_merge_leaf ...
PASS: bsp_tree_test
PASS: file_options_test
HDF5-DIAG: Error detected in HDF5 library version: 1.6.5 thread 0.  Back trace follows.
  #000: H5D.c line 1146 in H5Dopen(): not found
    major(15): Dataset interface
    minor(48): Object not found
  #001: H5G.c line 2296 in H5G_find(): object not found
    major(10): Symbol table layer
    minor(48): Object not found
  #002: H5G.c line 1495 in H5G_namei(): component not found
    major(10): Symbol table layer
    minor(48): Object not found
  #003: H5Gstab.c line 164 in H5G_stab_find(): not found
    major(10): Symbol table layer
    minor(48): Object not found
  #004: H5Gnode.c line 975 in H5G_node_found(): not found
    major(10): Symbol table layer
    minor(48): Object not found
HDF5-DIAG: Error detected in HDF5 library version: 1.6.5 thread 0.  Back trace follows.
  #000: H5D.c line 1146 in H5Dopen(): not found
    major(15): Dataset interface
    minor(48): Object not found
  #001: H5G.c line 2296 in H5G_find(): object not found
    major(10): Symbol table layer
    minor(48): Object not found
  #002: H5G.c line 1495 in H5G_namei(): component not found
    major(10): Symbol table layer
    minor(48): Object not found
  #003: H5Gstab.c line 164 in H5G_stab_find(): not found
    major(10): Symbol table layer
    minor(48): Object not found
  #004: H5Gnode.c line 975 in H5G_node_found(): not found
    major(10): Symbol table layer
    minor(48): Object not found
PASS: kd_tree_test
Running test_valid_struct ...
Running test_inline ...
Running test_non_inline ...
Running test_resize_ii ...
Running test_resize_in ...
Running test_resize_ni ...
Running test_resize_nn ...
PASS: var_len_test
Running test_valid_struct ...
Running test_inline ...
Running test_non_inline ...
Running test_resize_ii ...
Running test_resize_in ...
Running test_resize_ni ...
Running test_resize_nn ...
PASS: var_len_test_no_template
Running test_create_tag ...
Running test_invalid_tag_size ...
Running test_get_set_sparse_int ...
Running test_get_set_dense_int ...
Running test_get_set_dense_double ...
Running test_get_set_bit ...
Running test_get_by_tag ...
Running test_get_by_tag_value ...
Running test_mesh_value ...
Running test_get_pointers_sparse ...
Running test_get_pointers_dense ...
Running test_set_pointers_sparse ...
Running test_set_pointers_dense ...
Running test_get_entity_tags ...
Running test_delete_sparse_tag ...
Running test_delete_dense_tag ...
Running test_delete_mesh_tag ...
Running test_delete_sparse_data ...
Running test_delete_dense_data ...
Running test_delete_bit_data ...
Running test_create_variable_length_tag ...
Running test_get_set_variable_length_sparse ...
Running test_get_set_variable_length_dense ...
Running test_get_set_variable_length_mesh ...
Running regression_one_entity_by_var_tag ...
Running regression_tag_on_nonexistent_entity ...
PASS: tag_test
Running test_add_entities_ordered ...
Running test_add_entities_set ...
Running test_add_entities_ordered_tracking ...
Running test_add_entities_set_tracking ...
Running test_remove_entities_ordered ...
Running test_remove_entities_set ...
Running test_remove_entities_ordered_tracking ...
Running test_remove_entities_set_tracking ...
Running test_entities_by_type_ordered ...
Running test_entities_by_type_set ...
Running test_entities_by_dim_ordered ...
Running test_entities_by_dim_set ...
Running test_subtract_set_set ...
Running test_subtract_set_ordered ...
Running test_subtract_ordered_set ...
Running test_subtract_ordered_ordered ...
Running test_subtract_set_set_tracking ...
Running test_subtract_set_ordered_tracking ...
Running test_subtract_ordered_set_tracking ...
Running test_subtract_ordered_ordered_tracking ...
Running test_itersect_set_set ...
Running test_itersect_set_ordered ...
Running test_itersect_ordered_set ...
Running test_itersect_ordered_ordered ...
Running test_itersect_set_set_tracking ...
Running test_itersect_set_ordered_tracking ...
Running test_itersect_ordered_set_tracking ...
Running test_itersect_ordered_ordered_tracking ...
Running test_unite_set_set ...
Running test_unite_set_ordered ...
Running test_unite_ordered_set ...
Running test_unite_ordered_ordered ...
Running test_unite_set_set_tracking ...
Running test_unite_set_ordered_tracking ...
Running test_unite_ordered_set_tracking ...
Running test_unite_ordered_ordered_tracking ...
Running test_contains_entities_ordered ...
Running test_contains_entities_set ...
Running test_clear_ordered ...
Running test_clear_set ...
Running test_clear_ordered_tracking ...
Running test_clear_set_tracking ...
ALL TESTS PASSED
PASS: mesh_set_test
Running test_vertices ...
Running test_edges ...
Running test_quads ...
Running test_hexes ...
Running test_geometric_topology ...
Running test_geometric_sets ...
Running test_blocks ...
Running test_side_sets ...
Running test_node_sets ...
Running test_file_set ...
Running test_tri6 ...
Running test_tri7 ...
Running test_quad5 ...
Running test_quad8 ...
Running test_quad9 ...
Running test_tet8 ...
Running test_tet10 ...
Running test_tet14 ...
Running test_hex9 ...
Running test_hex20 ...
Running test_hex27 ...
Running test_multiple_files ...
PASS: cub_file_test
Running test_tri6 ...
Running test_tri7 ...
Running test_quad5 ...
Running test_quad8 ...
Running test_quad9 ...
Running test_tet8 ...
Running test_tet10 ...
Running test_tet14 ...
Running test_hex9 ...
Running test_hex20 ...
Running test_hex27 ...
PASS: exodus_test
Running test_dimension_pair ...
Running test_type_names ...
Running test_dimension ...
Running test_vertices_per_entity ...
Running test_num_sub_entities ...
Running test_sub_entity_type_vtx ...
Running test_sub_entity_type_edge ...
Running test_sub_entity_type_tri ...
Running test_sub_entity_type_quad ...
Running test_sub_entity_type_tet ...
Running test_sub_entity_type_pyr ...
Running test_sub_entity_type_pri ...
Running test_sub_entity_type_knife ...
Running test_sub_entity_type_hex ...
Running test_sub_entity_indices_vtx ...
Running test_sub_entity_indices_edge ...
Running test_sub_entity_indices_tri ...
Running test_sub_entity_indices_quad ...
Running test_sub_entity_indices_tet ...
Running test_sub_entity_indices_pyr ...
Running test_sub_entity_indices_pri ...
Running test_sub_entity_indices_hex ...
Running test_side_number_tri ...
Running test_side_number_quad ...
Running test_side_number_tet ...
Running test_side_number_pyr ...
Running test_side_number_pri ...
Running test_side_number_hex ...
Running test_opposite_side_tri ...
Running test_opposite_side_quad ...
Running test_opposite_side_tet ...
Running test_opposite_side_hex ...
Running test_has_mid_nodes_edge ...
Running test_has_mid_nodes_tri ...
Running test_has_mid_nodes_quad ...
Running test_has_mid_nodes_tet ...
Running test_has_mid_nodes_pyr ...
Running test_has_mid_nodes_pri ...
Running test_has_mid_nodes_knife ...
Running test_has_mid_nodes_hex ...
Running test_sub_entity_nodes_tri_edges ...
Running test_sub_entity_nodes_quad_edges ...
Running test_sub_entity_nodes_tet_edges ...
Running test_sub_entity_nodes_tet_faces ...
Running test_sub_entity_nodes_pyr_edges ...
Running test_sub_entity_nodes_pyr_faces ...
Running test_sub_entity_nodes_pri_edges ...
Running test_sub_entity_nodes_pri_faces ...
Running test_sub_entity_nodes_kni_edges ...
Running test_sub_entity_nodes_kni_faces ...
Running test_sub_entity_nodes_hex_edges ...
Running test_sub_entity_nodes_hex_faces ...
Running test_ho_node_parent ...
Running test_ho_node_index ...
PASS: mbcn_test
===================
All 21 tests passed
===================
make[2]: Leaving directory `/home/jason/moab/test/x86'
make[1]: Leaving directory `/home/jason/moab/test/x86'
Making check in test
make[1]: Entering directory `/home/jason/moab/test/x86/test'
Making check in dual
make[2]: Entering directory `/home/jason/moab/test/x86/test/dual'
make  dual_test
make[3]: Entering directory `/home/jason/moab/test/x86/test/dual'
make[3]: `dual_test' is up to date.
make[3]: Leaving directory `/home/jason/moab/test/x86/test/dual'
make  check-TESTS
make[3]: Entering directory `/home/jason/moab/test/x86/test/dual'
Usage: dual_test <mesh_file_name>
PASS: dual_test
==================
All 1 tests passed
==================
make[3]: Leaving directory `/home/jason/moab/test/x86/test/dual'
make[2]: Leaving directory `/home/jason/moab/test/x86/test/dual'
Making check in h5file
make[2]: Entering directory `/home/jason/moab/test/x86/test/h5file'
make  h5test h5legacy h5varlen h5sets_test h5regression
make[3]: Entering directory `/home/jason/moab/test/x86/test/h5file'
make[3]: `h5test' is up to date.
make[3]: `h5legacy' is up to date.
make[3]: `h5varlen' is up to date.
make[3]: `h5sets_test' is up to date.
make[3]: `h5regression' is up to date.
make[3]: Leaving directory `/home/jason/moab/test/x86/test/h5file'
make  check-TESTS
make[3]: Entering directory `/home/jason/moab/test/x86/test/h5file'
creating... writing... reading... comparing... success!
writing... clearing db... reading... comparing... success!
cleaning up... done.
PASS: h5test
Running test_moab_v3_poly_format ...
PASS: h5legacy
Running test_var_length_no_data ...
Running test_var_length_data ...
Running test_var_length_big_data ...
Running test_var_length_opaque ...
Running test_var_length_mesh_data ...
Running test_var_length_default_data ...
Running test_var_length_mesh_opaque ...
Running test_var_length_default_opaque ...
Running test_var_length_handle_tag ...
Running test_var_length_data_big ...
PASS: h5varlen
Running test_ranged_set_with_holes ...
Running test_file_set ...
PASS: h5sets_test
Running test_write_invalid_elem ...
PASS: h5regression
==================
All 5 tests passed
==================
make[3]: Leaving directory `/home/jason/moab/test/x86/test/h5file'
make[2]: Leaving directory `/home/jason/moab/test/x86/test/h5file'
Making check in obb
make[2]: Entering directory `/home/jason/moab/test/x86/test/obb'
make  obb_test obb_time obb_tree_tool
make[3]: Entering directory `/home/jason/moab/test/x86/test/obb'
make[3]: `obb_test' is up to date.
make[3]: `obb_time' is up to date.
make[3]: `obb_tree_tool' is up to date.
make[3]: Leaving directory `/home/jason/moab/test/x86/test/obb'
make  check-TESTS
make[3]: Entering directory `/home/jason/moab/test/x86/test/obb'
MOAB 3.99 (Alpha)
No file(s) specified.
Using default file "../../../src/test/3k-tri-sphere.vtk"
Using default file "../../../src/test/3k-tri-cube.h5m"
../../../src/test/3k-tri-sphere.vtk
------
Building tree from 2970 2D elements

No errors detected.
../../../src/test/3k-tri-cube.h5m
------
Building tree from 6 surfaces
Built tree from 6 surfaces (2934 elements)

No errors detected.
PASS: obb_test
==================
All 1 tests passed
==================
make[3]: Leaving directory `/home/jason/moab/test/x86/test/obb'
make[2]: Leaving directory `/home/jason/moab/test/x86/test/obb'
Making check in perf
make[2]: Entering directory `/home/jason/moab/test/x86/test/perf'
make  perf seqperf adj_time
make[3]: Entering directory `/home/jason/moab/test/x86/test/perf'
make[3]: `perf' is up to date.
make[3]: `seqperf' is up to date.
make[3]: `adj_time' is up to date.
make[3]: Leaving directory `/home/jason/moab/test/x86/test/perf'
make[2]: Leaving directory `/home/jason/moab/test/x86/test/perf'
make[2]: Entering directory `/home/jason/moab/test/x86/test'
make[2]: Nothing to be done for `check-am'.
make[2]: Leaving directory `/home/jason/moab/test/x86/test'
make[1]: Leaving directory `/home/jason/moab/test/x86/test'
Making check in tools
make[1]: Entering directory `/home/jason/moab/test/x86/tools'
Making check in iMesh
make[2]: Entering directory `/home/jason/moab/test/x86/tools/iMesh'
make  check-recursive
make[3]: Entering directory `/home/jason/moab/test/x86/tools/iMesh'
Making check in .
make[4]: Entering directory `/home/jason/moab/test/x86/tools/iMesh'
make  testc_cbind 
make[5]: Entering directory `/home/jason/moab/test/x86/tools/iMesh'
cc -DHAVE_CONFIG_H -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DSRCDIR=../../../src/tools/iMesh -I. -I../../../src/tools/iMesh -I../.. -I../../../src -I../.. -I.  -I/opt/netcdf-3.6.1-32-c2/include  -I/opt/hdf5-1.6.5-32-c2/include -isystem /opt/hdf5-1.6.5-32-c2/include  -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map  -Wall -pipe -pedantic -g -m32 -MT testc_cbind.o -MD -MP -MF .deps/testc_cbind.Tpo -c -o testc_cbind.o ../../../src/tools/iMesh/testc_cbind.c
In file included from ../../../src/tools/iMesh/testc_cbind.c:62:
../../../src/tools/iMesh/iMesh.h:1979:3: warning: C++ style comments are not allowed in ISO C90
../../../src/tools/iMesh/iMesh.h:1979:3: warning: (this will be reported only once per input file)
../../../src/tools/iMesh/testc_cbind.c: In function ‘entity_connectivity_test’:
../../../src/tools/iMesh/testc_cbind.c:519: warning: implicit declaration of function ‘iMesh_getAdjEntities’
../../../src/tools/iMesh/testc_cbind.c: In function ‘vertex_coordinates_test’:
../../../src/tools/iMesh/testc_cbind.c:1164: error: ‘iBase_UNDETERMINED’ undeclared (first use in this function)
../../../src/tools/iMesh/testc_cbind.c:1164: error: (Each undeclared identifier is reported only once
../../../src/tools/iMesh/testc_cbind.c:1164: error: for each function it appears in.)
../../../src/tools/iMesh/testc_cbind.c:1187: warning: passing argument 4 of ‘iMesh_getVtxArrCoords’ makes integer from pointer without a cast
make[5]: *** [testc_cbind.o] Error 1
make[5]: Leaving directory `/home/jason/moab/test/x86/tools/iMesh'
make[4]: *** [check-am] Error 2
make[4]: Leaving directory `/home/jason/moab/test/x86/tools/iMesh'
make[3]: *** [check-recursive] Error 1
make[3]: Leaving directory `/home/jason/moab/test/x86/tools/iMesh'
make[2]: *** [check] Error 2
make[2]: Leaving directory `/home/jason/moab/test/x86/tools/iMesh'
make[1]: *** [check-recursive] Error 1
make[1]: Leaving directory `/home/jason/moab/test/x86/tools'
make: *** [check-recursive] Error 1