[hpc-announce] BigDig Workshop

Tue Jun 6 11:23:07 CDT 2017

BigDig: High-Throughput Digitization for Natural History Collections

The BigDig workshop (http://press3.mcs.anl.gov/bigdig/) will be held on 24 October 2017 in conjunction with the 13th IEEE International Conference on eScience, Auckland, New Zealand. It will focus on high-throughput digitization, driven by the keen need to move the world’s physical collections into the digital realm where they are safer from the ravages of time, can be used by larger numbers of scientists and the public, and can contribute in new ways to the study of biodiversity.  Topics of interest include but are not limited to:

• Digitization technologies for high-throughput 2D and 3D capture of collection objects
• Instrumentation strategies and algorithms
• Specimen handling, label information capture, OCR, crowd-sourced label transcription, 3D reconstruction
• Digitization requirements, metadata, image and 3D fidelity, time and resource constraints, speed
• Workflows for high-throughput digitization of natural history collections
• Data management for large and perhaps distributed digital collections of such data
• Interface requirements, issues, and solutions both for scientific research and for public outreach to extremely large virtual collections
• Applications of the resulting data resource to potentially new science and approaches as evidenced by theoretical models, case studies, parallels with existing similar data resources

There is a wealth of untapped potential captured in the animal and plant collections held by museums of natural history around the world.  Novel discovery processes will be catalyzed by the existence of large, curated, inter-comparable digital collections of specimen data.  However, it has been noted that current methods may not be able to digitize the existing backlog of an estimated ~1.5 billion specimens, distributed across 1000+ collections, in the next 30 years or more.  Obtaining information on labels of 500 million entomological specimens is particularly challenging. It may even be impossible to keep up with the rate of expansion of these collections as new specimens are added.  Despite successful ongoing efforts, more needs to be done in terms of technology development across the ingest pipeline in order to meet this daunting challenge.  Therefore, it is important and timely that a workshop of practitioners continues to expand upon discussion of how to advance the technology of high-throughput specimen digitization and ingest to match the requirements of this complex but ultimately richly rewarding problem.

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Authors are invited to submit unpublished, original work, using the IEEE 8.5 x 11 manuscript guidelines: double-column text using single-spaced 10-point font on 8.5 x 11 inch pages.  Templates are available from http://www.ieee.org/conferences_events/conferences/publishing/templates.html.

We will be accepting submissions for:
• Full research papers for oral presentation (up to 10 pages) will focus on new research achievements in high throughput digitization methods, technologies, and applications.
• Experience papers for oral presentation (up to 10 pages) will focus on practical outcomes of applying high throughput digitization to existing collections.
• Poster submissions may focus on early stage results with the aim of fostering exchange of ideas and professional networking (up to 2 pages). IMPORTANT NOTE: Posters will be submitted directly thru the main eScience conference: http://escience2017.org.nz/submissions/call-for-papers/.

Authors of papers (not posters) should submit a PDF to https://easychair.org/conferences/?conf=bigdig2017.  It is a requirement that at least one author of each accepted paper attend the conference.

Important Dates (midnight anywhere on Earth):
• Submission Due: Friday, 30 June 2017
• Notification of Acceptance: Friday, 28 July 2017
• Camera Ready Due: Friday, 11 August, 2017

BigDig 2017 proceedings will be included in the eScience 2017 proceedings to be published by the IEEE Computer Society Press, USA and made available online through the IEEE Digital Library.

Contact: All questions about submissions should be emailed to bigdig-info at lists.mcs.anl.gov<mailto:bigdig-info at lists.mcs.anl.gov>

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Program Committee

• Jason Best, Botanical Research Institute of Texas
• David C. Blackburn, Florida Museum of Natural History
• Vladimir Blagoderov, Natural History Museum London
• Neil Cobb, Northern Arizona University
• Ollie Cossairt, Northwestern University
• Chris Dietrich, Illinois Natural History Survey
• Nicole Fisher, Australian National Insect Collection
• Aditi Majumder, University of California at Irvine
• Gil Nelson, Florida State University
• Peter T. Oboyski, Essig Museum of Entomology
• Deborah Paul, Florida State University
• Hannu Saarenmaa, University of Eastern Finland
• Bernhard Schurian, Museum fuer Naturkunde Berlin

Organizing committee

• Mark Hereld, Argonne National Laboratory
• Petra Sierwald, The Field Museum of Natural History
• Nicola Ferrier, Argonne National Laboratory

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Mark Hereld <hereld at anl.gov<mailto:hereld at anl.gov>>
Senior Fellow - Computation Institute
Senior Experimental Systems Engineer - Mathematics and Computer Science

Argonne National Laboratory
The University of Chicago

Cell: 630.327.2088
Office (unused): 630.252.4170

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