[ExM Users] Suppressing string_join() output

[Timothy Stitt (TGAC)]

Hi all,

I'm using the string_join() routine to concatenate the elements of a string array. For some reason I'm getting debug output (see example below) which I can't seem to suppress (even with TURBINE_LOG=0).

…
cont: 5 --model 2 chunk.3 6 protein2genome 0 ./exonerate_gcc 9 --percent 3 --target 1 --query 10 50.0 4 ecoli.fa 7 --score 8 50
Keys: 0 1 2 3 4 5 6 7 8 9 10 cont: 5 --model 2 chunk.3 6 protein2genome 0 ./exonerate_gcc 9 --percent 3 --target 1 --query 10 50.0 4 ecoli.fa 7 --score 8 50
…

Is there a quick fix to prevent this type of output being sent to stdout?

Thanks,

Tim.

---

Timothy Stitt PhD / Head of Scientific Computing

The Genome Analysis Centre (TGAC)

http://www.tgac.ac.uk/


p: +44 1603 450378

e: timothy.stitt at tgac.ac.uk<mailto:timothy.stitt at tgac.ac.uk>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.mcs.anl.gov/pipermail/exm-user/attachments/20150317/6e97e01a/attachment.html>