[ExM Users] Submitting tasks on Raven

[Michael Wilde]

Can someone help Scott with this?

Scott, I think #PBS -m is the email notification flag, not memory.

Its complaining that your aprun command is asking for more resources
than the qsub command requested for the job.

Check that the aprun -n -N -d do not exceed mppwidth etc from pns

Test your aprun args with a qsub -I asking for the correct numnber of
nodes and cores

On 4/24/13, Scott Krieder <skrieder at iit.edu> wrote:
> Hi All,
>
> I'm trying to run noop.tcl with turbine on Raven. I keep getting a memory
> error:
> apsched: claim exceeds reservation's memory
>
> I tried a few different values(100, 100M) for
> #PBS -m
> but I keep getting the error.
>
> Is there a way to let the PBS job take as much memory as it needs?
>
> Thanks,
> Scott
>
> =====aprun.sh script that I'm running=====
> # USAGE: qsub aprun.sh
>
> # The user should copy and edit the parameters throughout this script
> # marked USER:
>
> # USER: Directory available from compute nodes:
> USER_WORK=/ufs/home/users/p01684
>
> # USER: (optional) Change the qstat name
> #PBS -N turbine
> # USER: Set the job size
> #PBS -l mppwidth=1,mppnppn=3,mppdepth=1
> # USER: Set the wall time
> #PBS -l walltime=10:00
> # USER: (optional) Redirect output from its default location ($PWD)
> #PBS -o /ufs/home/users/p01684/pbs.out
>
> #PBS -j oe
> #PBS -m n
>
> # USER: Set configuration of Turbine processes
> export TURBINE_ENGINES=1
> export ADLB_SERVERS=1
>
> echo "Turbine: aprun.sh"
> date "+%m/%d/%Y %I:%M%p"
> echo
>
> # Be sure we are in an accessible directory
> cd $PBS_O_WORKDIR
>
> set -x
> # USER: Set Turbine installation path
> export TURBINE_HOME=${USER_WORK}/Public/sfw/turbine
> # USER: Select program name
> # PROGRAM=${USER_WORK}/adlb-data.tcl
> PROGRAM=${TURBINE_HOME}/test/noop.tcl
>
> source ${TURBINE_HOME}/scripts/turbine-config.sh
> if [[ ${?} != 0 ]]
> then
>   echo "turbine: configuration error!"
>   exit 1
> fi
>
> # Send environment variables to PBS job:
> #PBS -v TURBINE_ENGINES ADLB_SERVERS TURBINE_HOME
> # USER: Set aprun parameters to agree with PBS -l settings
> # aprun -n 1 -N 1 -cc none -d 1 ${TCLSH} ${PROGRAM}
> aprun -n 3 -N 3 -cc none -d 1 ${TURBINE_HOME}/bin/turbine ${PROGRAM}
>
> --
> Scott J. Krieder
> C: 419-685-0410
> E: skrieder at iit.edu
> http://datasys.cs.iit.edu/~skrieder/
>

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