[Darshan-users] No PDF file generation with darshan-summary-per-file.sh

Suman, Preeti preeti.suman at intel.com
Thu May 26 09:39:08 CDT 2016

Hello Shane,

Thank you for your reply, it was very helpful. Summary.log file listed an error: "undefined threeparttable environment". After I installed texlive-threeparttable, pdf files are generated by both darshan-summary-per-file and darshan-job-summary.

From: darshan-users-bounces at lists.mcs.anl.gov [mailto:darshan-users-bounces at lists.mcs.anl.gov] On Behalf Of Shane Snyder
Sent: Monday, May 23, 2016 3:23 PM
To: darshan-users at lists.mcs.anl.gov
Subject: Re: [Darshan-users] No PDF file generation with darshan-summary-per-file.sh

Hi Preeti,

Thanks for the heads up. To answer your questions:

a) Not sure why, but it looks like maybe your LaTeX installation is not finding your color.sty file. It might be helpful to check out the summary.log generated to see if there is a more helpful error (I give details on how you can do this below).

b) Those are the only prerequisites I'm aware of. As you can tell, there are some implicit LaTeX dependencies based on which packages we are using to generate the PDF summary. Most of those packages should come with most LaTeX installations, though. In your case, you have the corresponding color.sty file, but LaTeX isn't finding it for some reason.

c) darshan-job-summary creates a temporary directory in /tmp/ that stores all of the output data from generating the PDF. This directory is normally deleted after the PDF is generated, but you can force it to stick around by passing the '--verbose' flag to darshan-job-summary. (I know you mentioned you are using darshan-summary-per-file, so you'll have to edit that script to pass that flag to darshan-job-summary script, or just use darshan-job-summary directly until we can figure out what's going on).

Let us know whether you find any more details in the summary.log.

On 05/23/2016 02:44 PM, Suman, Preeti wrote:

I have installed Darshan-3.0.1. I have couple of questions on darshan-summary-per-file.sh.

When I run darshan-summary-per-file.sh it gives the following error:

#### BEGIN : output of darshan-summary-per-file.sh (using mpi-io-test-x86_64-3.0.1.darshan from darshan-test)

$ darshan-summary-per-file.sh mpi-io-test-x86_64-3.0.1.darshan output
Status: Generating summary for file 1 of 1: mpi-io-test.tmp.dat
Slowest unique file time: 0
Slowest shared file time: 0.033856
Total bytes read and written by app (may be incorrect): 134217728
Total absolute I/O time: 0.033856
**NOTE: above shared and unique file times calculated using MPI-IO timers if MPI-IO interface used on a given file, POSIX timers otherwise.
LaTeX generation (phase1) failed [256], aborting summary creation.
error log:
or enter new name. (Default extension: sty)

Enter file name:
! Emergency stop.
<read *>

l.9 \usepackage
!  ==> Fatal error occurred, no output PDF file produced!
Transcript written on summary.log.
darshan-summary-per-file.sh done. Results can be found in output/*.pdf.

#### END : output of darshan-summary-per-file.sh

System specification:
Kernel Version: Linux 4.0.5-1.el7.elrepo.x86_64
Operating System: CentOS Linux release 7.1.1503
CPU: Intel(R) Xeon(R) CPU E5-2630 v3 @ 2.40GHz (Haswell-EP)
Compiler: GCC 5.1.0
MPI: Intel MPI-5.1.2

I have the following questions:

a)  The color.sty file is located at "/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty". What could be the reason for error?

b)  I have installed all the prerequisites mentioned in the Darshan-util installation page (zlib, libbz2 development headers and library (libbz2-dev or similar), Perl, pdflatex, gnuplot 4.2 or later, epstopdf), is there any other prerequisite required?

c)  At the end of the darshan-summary-per-file.sh run, it mentions "Transcript written on summary.log". Where can I locate the log file?

I will greatly appreciate your response.




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