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<p class="MsoNormal"><span style="color:#1F497D">Hello Shane,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">Thank you for your reply, it was very helpful. Summary.log file listed an error: “undefined threeparttable environment”. After I installed texlive-threeparttable, pdf files are generated by both darshan-summary-per-file
and darshan-job-summary.<o:p></o:p></span></p>
<p class="MsoNormal"><a name="_MailEndCompose"><span style="color:#1F497D"><o:p> </o:p></span></a></p>
<p class="MsoNormal"><span style="color:#1F497D">Thanks,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">Preeti<o:p></o:p></span></p>
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<p class="MsoNormal"><a name="_____replyseparator"></a><b><span style="color:windowtext">From:</span></b><span style="color:windowtext"> darshan-users-bounces@lists.mcs.anl.gov [mailto:darshan-users-bounces@lists.mcs.anl.gov]
<b>On Behalf Of </b>Shane Snyder<br>
<b>Sent:</b> Monday, May 23, 2016 3:23 PM<br>
<b>To:</b> darshan-users@lists.mcs.anl.gov<br>
<b>Subject:</b> Re: [Darshan-users] No PDF file generation with darshan-summary-per-file.sh<o:p></o:p></span></p>
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<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal" style="margin-bottom:12.0pt">Hi Preeti,<br>
<br>
Thanks for the heads up. To answer your questions:<br>
<br>
a) Not sure why, but it looks like maybe your LaTeX installation is not finding your color.sty file. It might be helpful to check out the summary.log generated to see if there is a more helpful error (I give details on how you can do this below).
<br>
<br>
b) Those are the only prerequisites I'm aware of. As you can tell, there are some implicit LaTeX dependencies based on which packages we are using to generate the PDF summary. Most of those packages should come with most LaTeX installations, though. In your
case, you have the corresponding color.sty file, but LaTeX isn't finding it for some reason.<br>
<br>
c) darshan-job-summary creates a temporary directory in /tmp/ that stores all of the output data from generating the PDF. This directory is normally deleted after the PDF is generated, but you can force it to stick around by passing the '--verbose' flag to
darshan-job-summary. (I know you mentioned you are using darshan-summary-per-file, so you'll have to edit that script to pass that flag to darshan-job-summary script, or just use darshan-job-summary directly until we can figure out what's going on).<br>
<br>
Let us know whether you find any more details in the summary.log. <br>
<br>
--Shane<span style="font-size:12.0pt"><o:p></o:p></span></p>
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<p class="MsoNormal">On 05/23/2016 02:44 PM, Suman, Preeti wrote:<o:p></o:p></p>
</div>
<blockquote style="margin-top:5.0pt;margin-bottom:5.0pt">
<p class="MsoNormal"><span style="font-family:Consolas">Hello,</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-family:Consolas"> </span><o:p></o:p></p>
<pre><span style="font-size:11.0pt;font-family:Consolas">I have installed Darshan-3.0.1. I have couple of questions on darshan-summary-per-file.sh.</span><o:p></o:p></pre>
<pre><span style="font-size:11.0pt;font-family:Consolas">When I run darshan-summary-per-file.sh it gives the following error:</span><o:p></o:p></pre>
<p class="MsoNormal"><span style="font-family:Consolas"> </span><o:p></o:p></p>
<pre><span style="font-size:11.0pt;font-family:Consolas">#### BEGIN : output of darshan-summary-per-file.sh (using </span><span style="font-family:Consolas">mpi-io-test-x86_64-3.0.1.darshan from darshan-test)</span><o:p></o:p></pre>
<p class="MsoNormal"><span style="font-family:Consolas"> </span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-family:Consolas">$ darshan-summary-per-file.sh mpi-io-test-x86_64-3.0.1.darshan output
</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-family:Consolas">Status: Generating summary for file 1 of 1: mpi-io-test.tmp.dat</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-family:Consolas">=======================================================</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-family:Consolas">Slowest unique file time: 0</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-family:Consolas">Slowest shared file time: 0.033856</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-family:Consolas">Total bytes read and written by app (may be incorrect): 134217728</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-family:Consolas">Total absolute I/O time: 0.033856</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-family:Consolas">**NOTE: above shared and unique file times calculated using MPI-IO timers if MPI-IO interface used on a given file, POSIX timers otherwise.</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-family:Consolas">LaTeX generation (phase1) failed [256], aborting summary creation.</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-family:Consolas">error log:</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-family:Consolas">or enter new name. (Default extension: sty)</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-family:Consolas"> </span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-family:Consolas">Enter file name:</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-family:Consolas">! Emergency stop.</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-family:Consolas"><read *></span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-family:Consolas"> </span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-family:Consolas">l.9 \usepackage</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-family:Consolas"> {color}^^M</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-family:Consolas">! ==> Fatal error occurred, no output PDF file produced!</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-family:Consolas">Transcript written on summary.log.</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-family:Consolas">=======================================================</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-family:Consolas">darshan-summary-per-file.sh done. Results can be found in output/*.pdf.</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-family:Consolas"> </span><o:p></o:p></p>
<pre><span style="font-size:11.0pt;font-family:Consolas">#### END : output of darshan-summary-per-file.sh</span><o:p></o:p></pre>
<pre><span style="font-size:11.0pt;font-family:Consolas"> </span><o:p></o:p></pre>
<p class="MsoNormal"><span style="font-family:Consolas">System specification:</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-family:Consolas">Kernel Version: Linux 4.0.5-1.el7.elrepo.x86_64</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-family:Consolas">Operating System: CentOS Linux release 7.1.1503</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-family:Consolas">CPU: Intel(R) Xeon(R) CPU E5-2630 v3 @ 2.40GHz (Haswell-EP)</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-family:Consolas">Architecture:x86_64</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-family:Consolas">Compiler: GCC 5.1.0</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-family:Consolas">MPI: Intel MPI-5.1.2</span><o:p></o:p></p>
<pre><span style="font-size:11.0pt;font-family:Consolas"> </span><o:p></o:p></pre>
<pre><span style="font-size:11.0pt;font-family:Consolas">I have the following questions:</span><o:p></o:p></pre>
<pre style="margin-left:.5in;text-indent:-.25in;mso-list:l0 level1 lfo2"><![if !supportLists]><span style="mso-list:Ignore">a)<span style="font:7.0pt "Times New Roman""> </span></span><![endif]><span style="font-size:11.0pt;font-family:Consolas">The color.sty file is located at “/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty”. What could be the reason for error?</span><o:p></o:p></pre>
<pre style="margin-left:.5in;text-indent:-.25in;mso-list:l0 level1 lfo2"><![if !supportLists]><span style="mso-list:Ignore">b)<span style="font:7.0pt "Times New Roman""> </span></span><![endif]><span style="font-size:11.0pt;font-family:Consolas">I have installed all the prerequisites mentioned in the Darshan-util installation page (zlib, libbz2 development headers and library (libbz2-dev or similar), Perl, pdflatex, gnuplot 4.2 or later, epstopdf), is there any other prerequisite required?</span><o:p></o:p></pre>
<pre style="margin-left:.5in;text-indent:-.25in;mso-list:l0 level1 lfo2"><![if !supportLists]><span style="mso-list:Ignore">c)<span style="font:7.0pt "Times New Roman""> </span></span><![endif]><span style="font-size:11.0pt;font-family:Consolas">At the end of the darshan-summary-per-file.sh run, it mentions “Transcript written on summary.log”. Where can I locate the log file?</span><o:p></o:p></pre>
<pre><span style="font-size:11.0pt;font-family:Consolas"> </span><o:p></o:p></pre>
<pre><span style="font-size:11.0pt;font-family:Consolas">I will greatly appreciate your response.</span><o:p></o:p></pre>
<pre><span style="font-size:11.0pt;font-family:Consolas"> </span><o:p></o:p></pre>
<pre><span style="font-size:11.0pt;font-family:Consolas">Thanks,</span><o:p></o:p></pre>
<pre><span style="font-size:11.0pt;font-family:Consolas">Preeti</span><o:p></o:p></pre>
<p class="MsoNormal"><span style="font-family:Consolas"> </span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:12.0pt;font-family:"Times New Roman",serif"><br>
<br>
<br>
<o:p></o:p></span></p>
<pre>_______________________________________________<o:p></o:p></pre>
<pre>Darshan-users mailing list<o:p></o:p></pre>
<pre><a href="mailto:Darshan-users@lists.mcs.anl.gov">Darshan-users@lists.mcs.anl.gov</a><o:p></o:p></pre>
<pre><a href="https://lists.mcs.anl.gov/mailman/listinfo/darshan-users">https://lists.mcs.anl.gov/mailman/listinfo/darshan-users</a><o:p></o:p></pre>
</blockquote>
<p class="MsoNormal"><span style="font-size:12.0pt;font-family:"Times New Roman",serif"><o:p> </o:p></span></p>
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