[Darshan-users] Help with runtime error with dynamic linking

[Hedges, Richard M.]

Hoping someone will see my error.  I thought that I was pointing to all of the needed libraries, but apparently not.


Thanks,

- Richard



SCRIPT:


cat run.vulcan

#!/bin/csh


#MSUB -l nodes=192

#MSUB -l partition=vulcan

#MSUB -l walltime=1:00:00

#MSUB -q psmall

#MSUB -V

#MSUB -o /p/lscratchv/rhedges/USERS/jcaps/ZPGTBL_3D/sim.out


cd /p/lscratchv/rhedges/USERS/jcaps/ZPGTBL_3D

date


setenv DARSHAN_LOG_PATH `pwd`

setenv LD_LIBRARY_PATH /bgsys/drivers/ppcfloor/comm/lib:/p/lscratchv/rhedges/hdf5-1.8.16/Install/hdf5-1.8.16/parallel_gnu/lib:/bgsys/drivers/ppcfloor/comm/lib

setenv LD_PRELOAD /bgsys/drivers/ppcfloor/comm/lib/libmpichf90-gcc.so:/g/g0/rhedges/DARSHAN_3/darshan-3.0.0-pre2/Install/lib/libdarshan.so


srun --export=LD_PRELOAD,DARSHAN_LOG_PATH,LD_LIBRARY_PATH \

 -N 192  -n 768 /p/lscratchv/rhedges/USERS/jcaps/PlasComCM/src/plascomcm RocFlo-CM.00000000.h5

echo ‘Done'



RESULT:


vulcanlac3{rhedges}631: csh run.vulcan

/p/lscratchv/rhedges/USERS/jcaps/ZPGTBL_3D

Mon Dec 21 11:23:23 PST 2015

srun: symbol lookup error: /g/g0/rhedges/DARSHAN_3/darshan-3.0.0-pre2/Install/lib/libdarshan.so: undefined symbol: __real_PMPI_Gather

Done

vulcanlac3{rhedges}632:


====================================================

Richard Hedges
Customer Support and Test - File Systems Project
Development Environment Group - Livermore Computing
Lawrence Livermore National Laboratory
7000 East Avenue, MS L-557
Livermore, CA    94551

v:    (925) 423-2699
f:    (925) 423-6961
E:    richard-hedges at llnl.gov


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