[Darshan-users] Error Make - Darshan 2.2.6 - Error: symbol

[Sandra Mendez]

 Hello,

I have configured Darshan with the following command:

./configure --prefix=$HOME/darshan-2.2.6/build --with-mem-align=8
--with-log-path=$HOME/darshan-2.2.6/darshan-logs --with-jobid-env=PBS_JOBID
CC=$HOME/mpich2-1.5/build-pvfs2/bin/mpicc
+>01_script-configure-darshan.sh.log

But, when I make Darshan I have the following errors:

/home/sandra/mpich2-1.5/build-pvfs2/bin/mpicc
-DDARSHAN_CONFIG_H=\"darshan-runtime-config.h\" -I . -I ../ -I . -I./../ -g
-O2 -D_LARGEFILE64_SOURCE -c lib/darshan-posix.c -o lib/darshan-posix.o

/home/sandra/mpich2-1.5/build-pvfs2/bin/mpicc
-DDARSHAN_CONFIG_H=\"darshan-runtime-config.h\" -I . -I ../ -I . -I./../ -g
-O2 -D_LARGEFILE64_SOURCE -c lib/lookup3.c -o lib/lookup3.o

/home/sandra/mpich2-1.5/build-pvfs2/bin/mpicc
-DDARSHAN_CONFIG_H=\"darshan-runtime-config.h\" -I . -I ../ -I . -I./../ -g
-O2 -D_LARGEFILE64_SOURCE -c lib/lookup8.c -o lib/lookup8.o

ar rcs lib/libdarshan-posix.a lib/darshan-posix.o lib/lookup3.o
lib/lookup8.o

/home/sandra/mpich2-1.5/build-pvfs2/bin/mpicc
-DDARSHAN_CONFIG_H=\"darshan-runtime-config.h\" -I . -I ../ -I . -I./../ -g
-O2 -D_LARGEFILE64_SOURCE -c lib/darshan-mpi-io.c -o lib/darshan-mpi-io.o

/home/sandra/mpich2-1.5/build-pvfs2/bin/mpicc
-DDARSHAN_CONFIG_H=\"darshan-runtime-config.h\" -I . -I ../ -I . -I./../ -g
-O2 -D_LARGEFILE64_SOURCE -c lib/darshan-mpi-init-finalize.c -o
lib/darshan-mpi-init-finalize.o

/home/sandra/mpich2-1.5/build-pvfs2/bin/mpicc
-DDARSHAN_CONFIG_H=\"darshan-runtime-config.h\" -I . -I ../ -I . -I./../ -g
-O2 -D_LARGEFILE64_SOURCE -c lib/darshan-pnetcdf.c -o lib/darshan-pnetcdf.o

/home/sandra/mpich2-1.5/build-pvfs2/bin/mpicc
-DDARSHAN_CONFIG_H=\"darshan-runtime-config.h\" -I . -I ../ -I . -I./../ -g
-O2 -D_LARGEFILE64_SOURCE -c lib/darshan-hdf5.c -o lib/darshan-hdf5.o

ar rcs lib/libdarshan-mpi-io.a lib/darshan-mpi-io.o
lib/darshan-mpi-init-finalize.o lib/darshan-pnetcdf.o lib/darshan-hdf5.o

/home/sandra/mpich2-1.5/build-pvfs2/bin/mpicc
-DDARSHAN_CONFIG_H=\"darshan-runtime-config.h\" -I . -I. -I./../ -g -O2
-D_LARGEFILE64_SOURCE -shared -fpic -DPIC -DDARSHAN_PRELOAD -c
lib/darshan-mpi-io.c -o lib/darshan-mpi-io.po

/home/sandra/mpich2-1.5/build-pvfs2/bin/mpicc
-DDARSHAN_CONFIG_H=\"darshan-runtime-config.h\" -I . -I. -I./../ -g -O2
-D_LARGEFILE64_SOURCE -shared -fpic -DPIC -DDARSHAN_PRELOAD -c
lib/darshan-mpi-init-finalize.c -o lib/darshan-mpi-init-finalize.po

/home/sandra/mpich2-1.5/build-pvfs2/bin/mpicc
-DDARSHAN_CONFIG_H=\"darshan-runtime-config.h\" -I . -I. -I./../ -g -O2
-D_LARGEFILE64_SOURCE -shared -fpic -DPIC -DDARSHAN_PRELOAD -c
lib/darshan-pnetcdf.c -o lib/darshan-pnetcdf.po

/home/sandra/mpich2-1.5/build-pvfs2/bin/mpicc
-DDARSHAN_CONFIG_H=\"darshan-runtime-config.h\" -I . -I. -I./../ -g -O2
-D_LARGEFILE64_SOURCE -shared -fpic -DPIC -DDARSHAN_PRELOAD -c
lib/darshan-hdf5.c -o lib/darshan-hdf5.po

/home/sandra/mpich2-1.5/build-pvfs2/bin/mpicc
-DDARSHAN_CONFIG_H=\"darshan-runtime-config.h\" -I . -I. -I./../ -g -O2
-D_LARGEFILE64_SOURCE -shared -fpic -DPIC -DDARSHAN_PRELOAD -c
lib/darshan-posix.c -o lib/darshan-posix.po

/tmp/ccwsfNVH.s: Assembler messages:

/tmp/ccwsfNVH.s:1758: Error: symbol `lseek64' is already defined

/tmp/ccwsfNVH.s:2067: Error: symbol `__fxstat64' is already defined

/tmp/ccwsfNVH.s:2344: Error: symbol `mmap64' is already defined

/tmp/ccwsfNVH.s:5846: Error: symbol `pwrite64' is already defined

/tmp/ccwsfNVH.s:6496: Error: symbol `pread64' is already defined

/tmp/ccwsfNVH.s:7233: Error: symbol `__lxstat64' is already defined

/tmp/ccwsfNVH.s:7438: Error: symbol `__xstat64' is already defined

/tmp/ccwsfNVH.s:7891: Error: symbol `fopen64' is already defined

/tmp/ccwsfNVH.s:8373: Error: symbol `creat64' is already defined

/tmp/ccwsfNVH.s:8891: Error: symbol `open64' is already defined

make: *** [lib/darshan-posix.po] Error 1

Somebody, Can help me?

Thanks in advance.

Sandra.- 

 

 

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