[Darshan-users] Instrumenting statically-linked applications

[Kevin Harms]

  Can you send me the output of 'module list'.

kevin

On Nov 26, 2012, at 2:27 PM, Dragos Constantin wrote:

> Hi Kevin,
> The problem is not with the argument parsing. This is what I get in both cases:
> 
> login4$ ./darshan-gen-cc.pl /opt/apps/gcc4_4/mvapich/1.0.1/bin/mpicc --output mpicc.darshan
> CC_from_link = gcc -Wl,-rpath,/opt/apps/gcc4_4/mvapich/1.0.1/lib/shared -Wl,-rpath-link -Wl,/opt/apps/gcc4_4/mvapich/1.0.1/lib/shared -L/opt/apps/gcc4_4/mvapich/1.0.1/lib/shared -L/opt/apps/gcc4_4/mvapich/1.0.1/lib
> CC_from_compile = gcc
> Error: cannot find matching CC from: gcc -c foo.c -I/opt/apps/gcc4_4/mvapich/1.0.1/include
> and: gcc -Wl,-rpath,/opt/apps/gcc4_4/mvapich/1.0.1/lib/shared -Wl,-rpath-link -Wl,/opt/apps/gcc4_4/mvapich/1.0.1/lib/shared -L/opt/apps/gcc4_4/mvapich/1.0.1/lib/shared -L/opt/apps/gcc4_4/mvapich/1.0.1/lib foo.o -o foo -lmpich -L/opt/ofed//lib64/ -libverbs -libumad -lpthread -lpthread -lrt
> 
> login4$ ./darshan-gen-cc.pl --output mpicc.darshan /opt/apps/gcc4_4/mvapich/1.0.1/bin/mpicc
> CC_from_link = gcc -Wl,-rpath,/opt/apps/gcc4_4/mvapich/1.0.1/lib/shared -Wl,-rpath-link -Wl,/opt/apps/gcc4_4/mvapich/1.0.1/lib/shared -L/opt/apps/gcc4_4/mvapich/1.0.1/lib/shared -L/opt/apps/gcc4_4/mvapich/1.0.1/lib
> CC_from_compile = gcc
> Error: cannot find matching CC from: gcc -c foo.c -I/opt/apps/gcc4_4/mvapich/1.0.1/include
> and: gcc -Wl,-rpath,/opt/apps/gcc4_4/mvapich/1.0.1/lib/shared -Wl,-rpath-link -Wl,/opt/apps/gcc4_4/mvapich/1.0.1/lib/shared -L/opt/apps/gcc4_4/mvapich/1.0.1/lib/shared -L/opt/apps/gcc4_4/mvapich/1.0.1/lib foo.o -o foo -lmpich -L/opt/ofed//lib64/ -libverbs -libumad -lpthread -lpthread -lrt
> 
> As you can see:
> 
> CC_from_compile = gcc
> 
> but CC_from_link is not gcc and if I am not mistaken it should be gcc. I just started to look at the script and you might know better what is going on here.
> 
> Thanks,
> Dragos
> 
> 
> Dragos Constantin, PhD
> 
> Research Associate
> Department of Radiology 
> Stanford University 
> Lucas MRS Center 
> 1201 Welch Rd., PS-055 
> Stanford CA 94305 
> 
> Office: (650) 736-9961
> Fax: (650) 723-5795 
> 
> ----- Original Message -----
> From: "Kevin Harms" <harms at alcf.anl.gov>
> To: "Dragos Constantin" <dragos.constantin at stanford.edu>
> Cc: darshan-users at lists.mcs.anl.gov
> Sent: Monday, November 26, 2012 12:23:00 PM
> Subject: Re: [Darshan-users] Instrumenting statically-linked applications
> 
> 
>  I think this might be a simple issue with argument parsing. Try this instead:
> 
>> ./darshan-gen-cc.pl --output mpicc.darshan /opt/apps/gcc4_4/mvapich/1.0.1/bin/mpicc 
> 
> kevin
> 
> On Nov 26, 2012, at 2:16 PM, Dragos Constantin wrote:
> 
>> Hi,
>> I've installed and configured darshan-2.2.3 on TACC Ranger in my user space. I have used gcc-4.4.5 (and mvapich-1.0.1).
>> 
>> When I try to generate the MPI compiler scripts for statically-linked applications I get the following error:
>> 
>> login4$ ./darshan-gen-cc.pl /opt/apps/gcc4_4/mvapich/1.0.1/bin/mpicc --output mpicc.darshan
>> Error: cannot find matching CC from: gcc -c foo.c -I/opt/apps/gcc4_4/mvapich/1.0.1/include
>> and: gcc -Wl,-rpath,/opt/apps/gcc4_4/mvapich/1.0.1/lib/shared -Wl,-rpath-link -Wl,/opt/apps/gcc4_4/mvapich/1.0.1/lib/shared -L/opt/apps/gcc4_4/mvapich/1.0.1/lib/shared -L/opt/apps/gcc4_4/mvapich/1.0.1/lib foo.o -o foo -lmpich -L/opt/ofed//lib64/ -libverbs -libumad -lpthread -lpthread -lrt
>> 
>> I am not quite sure what triggered this. Any ideas how to quickly fix the issue? I will look at the perl script to see what is going on there.
>> 
>> Thanks,
>> Dragos
>> 
>> 
>> Dragos Constantin, PhD
>> 
>> Research Associate
>> Department of Radiology 
>> Stanford University 
>> Lucas MRS Center 
>> 1201 Welch Rd., PS-055 
>> Stanford CA 94305 
>> 
>> Office: (650) 736-9961
>> Fax: (650) 723-5795 
>> 
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>