[Darshan-commits] Build failed in Jenkins: darshan-master-mpich-3.0.4-dynamic #864

help at cels.anl.gov help at cels.anl.gov
Sun Oct 15 11:24:43 CDT 2017 

See <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/864/display/redirect>

------------------------------------------
[...truncated 10009 lines...]
[darshan-master-mpich-3.0.4-dynamic] $ /bin/bash /tmp/hudson3321231329408894790.sh
[darshan-master-mpich-3.0.4-dynamic] $ /bin/bash /tmp/hudson5882790175027659629.sh
checking for a BSD-compatible install... /usr/bin/install -c
checking whether the mpicc compiler works... checking for gcc... mpicc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether mpicc accepts -g... yes
checking for mpicc option to accept ISO C89... none needed
yes
checking how to run the C preprocessor... mpicc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking for inflateEnd in -lz... yes
checking for BG/Q environment... no
checking lustre/lustre_user.h usability... no
checking lustre/lustre_user.h presence... no
checking for lustre/lustre_user.h... no
checking for inttypes.h... (cached) yes
checking whether the inttypes.h PRIxNN macros are broken... no
checking for inttypes.h... (cached) yes
checking whether byte ordering is bigendian... no
checking for struct aiocb64... yes
checking for off64_t... yes
checking mntent.h usability... yes
checking mntent.h presence... yes
checking for mntent.h... yes
checking sys/mount.h usability... yes
checking sys/mount.h presence... yes
checking for sys/mount.h... yes
checking for MPI-IO support in MPI... yes
checking for MPI-IO prototypes without const qualifier... no
checking for MPI-IO prototypes with const qualifier... yes
checking for shared libraries in MPI... yes
checking for MPIO_Request... yes
checking for old (pre-3.1.1) style MPICH library naming convention... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating darshan-mk-log-dirs.pl
config.status: creating darshan-gen-cc.pl
config.status: creating darshan-gen-cxx.pl
config.status: creating darshan-gen-fortran.pl
config.status: creating darshan-config
config.status: creating share/craype-1.x/darshan-module
config.status: creating share/craype-2.x/darshan-module
config.status: creating lib/pkgconfig/darshan-runtime.pc
config.status: creating share/mpi-profile/darshan-cc.conf
config.status: creating share/mpi-profile/darshan-cxx.conf
config.status: creating share/mpi-profile/darshan-f.conf
config.status: creating share/mpi-profile/darshan-bg-cc.conf
config.status: creating share/mpi-profile/darshan-bg-cxx.conf
config.status: creating share/mpi-profile/darshan-bg-f.conf
config.status: creating share/ld-opts/darshan-base-ld-opts
config.status: creating darshan-runtime-config.h
config.status: darshan-runtime-config.h is unchanged
checking for a BSD-compatible install... /usr/bin/install -c
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking for inflateEnd in -lz... yes
checking if bzlib is wanted... yes
checking for BZ2_bzCompressInit in -lbz2... yes
checking bzlib.h usability... yes
checking bzlib.h presence... yes
checking for bzlib.h... yes
checking for BZ2_bzCompressInit in -lbz2... (cached) yes
checking bzlib in /usr... ok
checking for inttypes.h... (cached) yes
checking whether the inttypes.h PRIxNN macros are broken... no
checking for inttypes.h... (cached) yes
checking for pdflatex... yes
checking for -halt-on-error argument to pdflatex... yes
checking whether byte ordering is bigendian... no
checking for off64_t... yes
checking for strndup... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating darshan-job-summary/bin/darshan-job-summary.pl
config.status: creating maint/darshan-util.pc
config.status: creating darshan-util-config.h
config.status: darshan-util-config.h is unchanged
[darshan-master-mpich-3.0.4-dynamic] $ /bin/bash /tmp/hudson263075889858517246.sh
install -d <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/lib>
install -m 755 lib/libdarshan.a <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/lib>
install -m 755 lib/libdarshan-stubs.a <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/lib>
install -m 755 lib/libdarshan.so <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/lib>
install -d <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/bin>
install -m 755 darshan-mk-log-dirs.pl <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/bin>
install -m 755 darshan-gen-cc.pl <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/bin>
install -m 755 darshan-gen-cxx.pl <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/bin>
install -m 755 darshan-gen-fortran.pl <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/bin>
install -m 755 darshan-config <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/bin>
install -d <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/share/craype-1.x/modulefiles/darshan>
install -m 755 share/craype-1.x/darshan-module <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/share/craype-1.x/modulefiles/darshan/3.1.4>
install -d <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/share/craype-2.x/modulefiles/darshan>
install -m 755 share/craype-2.x/darshan-module <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/share/craype-2.x/modulefiles/darshan/3.1.4>
install -d <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/share/mpi-profile>
install -m 755 share/mpi-profile/darshan-cc.conf <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/share/mpi-profile/darshan-cc.conf>
install -m 755 share/mpi-profile/darshan-cxx.conf <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/share/mpi-profile/darshan-cxx.conf>
install -m 755 share/mpi-profile/darshan-f.conf <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/share/mpi-profile/darshan-f.conf>
install -m 755 share/mpi-profile/darshan-bg-cc.conf <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/share/mpi-profile/darshan-bg-cc.conf>
install -m 755 share/mpi-profile/darshan-bg-cxx.conf <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/share/mpi-profile/darshan-bg-cxx.conf>
install -m 755 share/mpi-profile/darshan-bg-f.conf <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/share/mpi-profile/darshan-bg-f.conf>
install -d <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/share/ld-opts>
install -m 644 share/ld-opts/darshan-base-ld-opts <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/share/ld-opts/darshan-base-ld-opts>
install -m 644 ../../darshan-runtime/share/ld-opts/darshan-posix-ld-opts <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/share/ld-opts/darshan-posix-ld-opts>
install -m 644 ../../darshan-runtime/share/ld-opts/darshan-pnetcdf-ld-opts <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/share/ld-opts/darshan-pnetcdf-ld-opts>
install -m 644 ../../darshan-runtime/share/ld-opts/darshan-stdio-ld-opts <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/share/ld-opts/darshan-stdio-ld-opts>
install -m 644 ../../darshan-runtime/share/ld-opts/darshan-mpiio-ld-opts <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/share/ld-opts/darshan-mpiio-ld-opts>
install -d <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/lib/pkgconfig>
install -m 644 lib/pkgconfig/darshan-runtime.pc <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/lib/pkgconfig/darshan-runtime.pc>
make: Nothing to be done for `all'.
install -d <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/bin>
install -d <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/lib>
install -d <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/include>
install -d <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/lib/pkgconfig>
install -m 755 darshan-analyzer <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/bin>
install -m 755 darshan-convert <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/bin>
install -m 755 darshan-diff <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/bin>
install -m 755 darshan-parser <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/bin>
install -m 755 darshan-dxt-parser <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/bin>
install -m 755 darshan-merge <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/bin>
install -m 755 ../../darshan-util/darshan-summary-per-file.sh <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/bin>
install -m 755 ../../darshan-util/dxt_analyzer.py <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/bin>
install -m 755 libdarshan-util.a <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/lib>
install -m 644 ../../darshan-util/darshan-logutils.h <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/include>
install -m 644 ../../darshan-util/darshan-posix-logutils.h <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/include>
install -m 644 ../../darshan-util/darshan-mpiio-logutils.h <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/include>
install -m 644 ../../darshan-util/darshan-hdf5-logutils.h <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/include>
install -m 644 ../../darshan-util/darshan-pnetcdf-logutils.h <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/include>
install -m 644 ../../darshan-util/darshan-bgq-logutils.h <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/include>
install -m 644 ../../darshan-util/darshan-null-logutils.h <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/include>
install -m 644 ../../darshan-util/darshan-lustre-logutils.h <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/include>
install -m 644 ../../darshan-util/darshan-stdio-logutils.h <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/include>
install -m 644 ../../darshan-util/darshan-dxt-logutils.h <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/include>
install -m 644 ../../darshan-util/../darshan-null-log-format.h <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/include>
install -m 644 ../../darshan-util/../darshan-posix-log-format.h <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/include>
install -m 644 ../../darshan-util/../darshan-mpiio-log-format.h <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/include>
install -m 644 ../../darshan-util/../darshan-hdf5-log-format.h <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/include>
install -m 644 ../../darshan-util/../darshan-pnetcdf-log-format.h <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/include>
install -m 644 ../../darshan-util/../darshan-bgq-log-format.h <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/include>
install -m 644 ../../darshan-util/../darshan-lustre-log-format.h <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/include>
install -m 644 ../../darshan-util/../darshan-stdio-log-format.h <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/include>
install -m 644 ../../darshan-util/../darshan-dxt-log-format.h <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/include>
install -d <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/include/uthash-1.9.2>
install -d <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/include/uthash-1.9.2/src>
install -m 644 uthash-1.9.2/src/uthash.h <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/include/uthash-1.9.2/src/>
install -m 644 ../../darshan-util/../darshan-log-format.h <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/include>
install -m 755 darshan-job-summary/bin/darshan-job-summary.pl <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/bin>
install -d <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/lib/TeX>
install -m 644 ../../darshan-util/darshan-job-summary/lib/TeX/Encode.pm <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/lib/TeX/>
install -d <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/lib/Number>
install -d <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/lib/Number/Bytes>
install -m 644 ../../darshan-util/darshan-job-summary/lib/Number/Bytes/Human.pm <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/lib/Number/Bytes>
install -d <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/share>
install -m 644 ../../darshan-util/darshan-job-summary/share/* <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/share>
install -m 644 maint/darshan-util.pc <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/install/lib/pkgconfig>
[darshan-master-mpich-3.0.4-dynamic] $ /bin/bash /tmp/hudson9067292689330184766.sh
Running <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/darshan-test/regression/test-cases/access-size-counter-test.sh...>
Done.
Running <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/darshan-test/regression/test-cases/cxxpi.sh...>
Process Process 1 of 4 is on churn
Process 3 of 4 is on churn
0 of 4 is on churn
pi is approximately 3.14159 Error is 8.33331e-10
wall clock time = 0.000326633
Process 2 of 4 is on churn
Done.
Running <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/darshan-test/regression/test-cases/fperf-f77.sh...>
 Access size per process =      4194304  bytes, ntimes =            5
 Write bandwidth without file sync =    1354.1304733414925       Mbytes/sec
 Read bandwidth without prior file sync =    3033.1355248993104       Mbytes/sec
 Write bandwidth including file sync =    28.123558897731851       Mbytes/sec
 Read bandwidth after file sync =    2839.6248810646866       Mbytes/sec
Done.
Running <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/darshan-test/regression/test-cases/fperf-f90.sh...>
 Access size per process =      4194304  bytes, ntimes =            5
 Write bandwidth without file sync =    1380.7810407092204       Mbytes/sec
 Read bandwidth without prior file sync =    2832.4240934496861       Mbytes/sec
 Write bandwidth including file sync =    29.114530995163765       Mbytes/sec
 Read bandwidth after file sync =    2791.7457818640005       Mbytes/sec
Done.
Running <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/darshan-test/regression/test-cases/fprintf-fscanf-test.sh...>
# Using stdio calls.
Done.
Running <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/darshan-test/regression/test-cases/mpi-io-test-dxt.sh...>
# Using mpi-io calls.
nr_procs = 4, nr_iter = 1, blk_sz = 16777216, coll = 0
# total_size = 67108864
# Write: min_t = 0.010919, max_t = 0.042078, mean_t = 0.026428, var_t = 0.000180
# Read:  min_t = 0.015602, max_t = 0.037049, mean_t = 0.028614, var_t = 0.000106
Write bandwidth = 1594.858471 Mbytes/sec
Read bandwidth = 1811.351567 Mbytes/sec
Done.
Running <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/darshan-test/regression/test-cases/mpi-io-test.sh...>
# Using mpi-io calls.
nr_procs = 4, nr_iter = 1, blk_sz = 16777216, coll = 0
# total_size = 67108864
# Write: min_t = 0.010213, max_t = 0.039334, mean_t = 0.024841, var_t = 0.000156
# Read:  min_t = 0.030129, max_t = 0.030940, mean_t = 0.030561, var_t = 0.000000
Write bandwidth = 1706.126093 Mbytes/sec
Read bandwidth = 2169.012928 Mbytes/sec
Done.
Running <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/darshan-test/regression/test-cases/stdio-test.sh...>
# Using stdio calls.
Error: STDIO open count of 0 is incorrect
Error: failed to execute test case <https://jenkins-ci.cels.anl.gov/job/darshan-master-mpich-3.0.4-dynamic/ws/darshan-test/regression/test-cases/stdio-test.sh>
Done.
1 tests failed
Build step 'Execute shell' marked build as failure
Recording test results

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