[petsc-users] mat_type MATSEQAIJCUSPARSE not recognized

Mon Jan 28 13:32:38 CST 2019

Send your configure.log

  Thanks,

    Matt

On Mon, Jan 28, 2019 at 2:05 PM Najeeb Ahmad via petsc-users <
petsc-users at mcs.anl.gov> wrote:

>
> Dear all,
>
> I am trying to use PETSc with GPU. I have followed instructions laid down
> at https://www.mcs.anl.gov/petsc/features/gpus.html. When I run my code,
> it doesn't recognize the mat_type MATSEQAIJCUSPARSE. Here is the log:
>
> mpiexec -n 1 ./GMRES_PETSc -fin ../MM2PETScMatConverter/HV15R.bin
> -ksp_monitor -pc_type ilu -pc_factor_levels 0 -ksp_gmres_restart 200
> -ksp_gmres_preallocate -vec_type VECSEQCUDA -mat_type MATSEQAIJCUSPARSE
> Processes: 1
> [0]PETSC ERROR: --------------------- Error Message
> --------------------------------------------------------------
> [0]PETSC ERROR: Unknown type. Check for miss-spelling or missing package:
> http://www.mcs.anl.gov/petsc/documentation/installation.html#external
> [0]PETSC ERROR: Unknown Mat type given: MATSEQAIJCUSPARSE
> [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html
> for trouble shooting.
> [0]PETSC ERROR: Petsc Development GIT revision: v3.10.3-1369-g58fe69bfc8
> GIT Date: 2019-01-25 22:25:25 -0600
> [0]PETSC ERROR: ./GMRES_PETSc on a arch-linux2-c-debug named
> ip-172-31-86-226 by ubuntu Mon Jan 28 18:10:34 2019
> [0]PETSC ERROR: Configure options --with-cc=gcc --download-mpich
> --with-cuda=1 --with-cuda-dir=/usr/local/cuda-10.0/ --download-fblaslapack=1
> [0]PETSC ERROR: #1 MatSetType() line 61 in
> /home/ubuntu/petsc/src/mat/interface/matreg.c
> [0]PETSC ERROR: #2 MatSetFromOptions() line 230 in
> /home/ubuntu/petsc/src/mat/utils/gcreate.c
> [0]PETSC ERROR: #3 main() line 48 in
> /home/ubuntu/koc-aramco/src_GPU/GMRES_PETSc/main.c
> [0]PETSC ERROR: PETSc Option Table entries:
> [0]PETSC ERROR: -fin ../MM2PETScMatConverter/HV15R.bin
> [0]PETSC ERROR: -ksp_gmres_preallocate
> [0]PETSC ERROR: -ksp_gmres_restart 200
> [0]PETSC ERROR: -ksp_monitor
> [0]PETSC ERROR: -mat_type MATSEQAIJCUSPARSE
> [0]PETSC ERROR: -pc_factor_levels 0
> [0]PETSC ERROR: -pc_type ilu
> [0]PETSC ERROR: -vec_type VECSEQCUDA
> [0]PETSC ERROR: ----------------End of Error Message -------send entire
> error message to petsc-maint at mcs.anl.gov----------
> application called MPI_Abort(MPI_COMM_WORLD, 86) - process 0
> [cli_0]: readline failed
> [0]PETSC ERROR:
> ------------------------------------------------------------------------
> [0]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the
> batch system) has told this process to end
> [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
> [0]PETSC ERROR: or see
> http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind
> [0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS
> X to find memory corruption errors
> [0]PETSC ERROR: likely location of problem given in stack below
> [0]PETSC ERROR: ---------------------  Stack Frames
> ------------------------------------
> [0]PETSC ERROR: Note: The EXACT line numbers in the stack are not
> available,
> [0]PETSC ERROR:       INSTEAD the line number of the start of the function
> [0]PETSC ERROR:       is given.
> [0]PETSC ERROR: [0] PetscError line 352
> /home/ubuntu/petsc/src/sys/error/err.c
> [0]PETSC ERROR: [0] MatSetType line 42
> /home/ubuntu/petsc/src/mat/interface/matreg.c
> [0]PETSC ERROR: [0] MatSetFromOptions line 214
> /home/ubuntu/petsc/src/mat/utils/gcreate.c
> [0]PETSC ERROR: --------------------- Error Message
> --------------------------------------------------------------
> [0]PETSC ERROR: Signal received
> [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html
> for trouble shooting.
> [0]PETSC ERROR: Petsc Development GIT revision: v3.10.3-1369-g58fe69bfc8
> GIT Date: 2019-01-25 22:25:25 -0600
> [0]PETSC ERROR: ./GMRES_PETSc on a arch-linux2-c-debug named
> ip-172-31-86-226 by ubuntu Mon Jan 28 18:10:34 2019
> [0]PETSC ERROR: Configure options --with-cc=gcc --download-mpich
> --with-cuda=1 --with-cuda-dir=/usr/local/cuda-10.0/ --download-fblaslapack=1
> [0]PETSC ERROR: #4 User provided function() line 0 in  unknown file
> application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0
> [0]PETSC ERROR:
> ------------------------------------------------------------------------
> [0]PETSC ERROR: Caught signal number 13 Broken Pipe: Likely while reading
> or writing to a socket
> [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
> [0]PETSC ERROR: or see
> http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind
> [0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS
> X to find memory corruption errors
> [0]PETSC ERROR: likely location of problem given in stack below
> [0]PETSC ERROR: ---------------------  Stack Frames
> ------------------------------------
> [0]PETSC ERROR: Note: The EXACT line numbers in the stack are not
> available,
> [0]PETSC ERROR:       INSTEAD the line number of the start of the function
> [0]PETSC ERROR:       is given.
> [0]PETSC ERROR: [0] PetscError line 352
> /home/ubuntu/petsc/src/sys/error/err.c
> [0]PETSC ERROR: [0] MatSetType line 42
> /home/ubuntu/petsc/src/mat/interface/matreg.c
> [0]PETSC ERROR: [0] MatSetFromOptions line 214
> /home/ubuntu/petsc/src/mat/utils/gcreate.c
> [0]PETSC ERROR: --------------------- Error Message
> --------------------------------------------------------------
> [0]PETSC ERROR: Signal received
> [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html
> for trouble shooting.
> [0]PETSC ERROR: Petsc Development GIT revision: v3.10.3-1369-g58fe69bfc8
> GIT Date: 2019-01-25 22:25:25 -0600
> [0]PETSC ERROR: ./GMRES_PETSc on a arch-linux2-c-debug named
> ip-172-31-86-226 by ubuntu Mon Jan 28 18:10:34 2019
> [0]PETSC ERROR: Configure options --with-cc=gcc --download-mpich
> --with-cuda=1 --with-cuda-dir=/usr/local/cuda-10.0/ --download-fblaslapack=1
> [0]PETSC ERROR: #5 User provided function() line 0 in  unknown file
> application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0
> [cli_0]: write_line error; fd=9 buf=:cmd=abort exitcode=59
> :
> system msg for write_line failure : Broken pipe
>
>
> Any help will be greatly appreciated.
>
> Regards,
>
> --
> *Najeeb Ahmad*
>
>
> *Research and Teaching Assistant*
> *PARallel and MultiCORE Computing Laboratory (ParCoreLab) *
>
> *Computer Science and Engineering*
> *Koç University, Istanbul, Turkey*
>

-- 
What most experimenters take for granted before they begin their
experiments is infinitely more interesting than any results to which their
experiments lead.
-- Norbert Wiener

https://www.cse.buffalo.edu/~knepley/ <http://www.cse.buffalo.edu/~knepley/>
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