[petsc-users] mat_type MATSEQAIJCUSPARSE not recognized

Mon Jan 28 12:48:56 CST 2019

Dear all,

I am trying to use PETSc with GPU. I have followed instructions laid down
at https://www.mcs.anl.gov/petsc/features/gpus.html. When I run my code, it
doesn't recognize the mat_type MATSEQAIJCUSPARSE. Here is the log:

mpiexec -n 1 ./GMRES_PETSc -fin ../MM2PETScMatConverter/HV15R.bin
-ksp_monitor -pc_type ilu -pc_factor_levels 0 -ksp_gmres_restart 200
-ksp_gmres_preallocate -vec_type VECSEQCUDA -mat_type MATSEQAIJCUSPARSE
Processes: 1
[0]PETSC ERROR: --------------------- Error Message
--------------------------------------------------------------
[0]PETSC ERROR: Unknown type. Check for miss-spelling or missing package:
http://www.mcs.anl.gov/petsc/documentation/installation.html#external
[0]PETSC ERROR: Unknown Mat type given: MATSEQAIJCUSPARSE
[0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for
trouble shooting.
[0]PETSC ERROR: Petsc Development GIT revision: v3.10.3-1369-g58fe69bfc8
GIT Date: 2019-01-25 22:25:25 -0600
[0]PETSC ERROR: ./GMRES_PETSc on a arch-linux2-c-debug named
ip-172-31-86-226 by ubuntu Mon Jan 28 18:10:34 2019
[0]PETSC ERROR: Configure options --with-cc=gcc --download-mpich
--with-cuda=1 --with-cuda-dir=/usr/local/cuda-10.0/ --download-fblaslapack=1
[0]PETSC ERROR: #1 MatSetType() line 61 in
/home/ubuntu/petsc/src/mat/interface/matreg.c
[0]PETSC ERROR: #2 MatSetFromOptions() line 230 in
/home/ubuntu/petsc/src/mat/utils/gcreate.c
[0]PETSC ERROR: #3 main() line 48 in
/home/ubuntu/koc-aramco/src_GPU/GMRES_PETSc/main.c
[0]PETSC ERROR: PETSc Option Table entries:
[0]PETSC ERROR: -fin ../MM2PETScMatConverter/HV15R.bin
[0]PETSC ERROR: -ksp_gmres_preallocate
[0]PETSC ERROR: -ksp_gmres_restart 200
[0]PETSC ERROR: -ksp_monitor
[0]PETSC ERROR: -mat_type MATSEQAIJCUSPARSE
[0]PETSC ERROR: -pc_factor_levels 0
[0]PETSC ERROR: -pc_type ilu
[0]PETSC ERROR: -vec_type VECSEQCUDA
[0]PETSC ERROR: ----------------End of Error Message -------send entire
error message to petsc-maint at mcs.anl.gov----------
application called MPI_Abort(MPI_COMM_WORLD, 86) - process 0
[cli_0]: readline failed
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the
batch system) has told this process to end
[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[0]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind
[0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X
to find memory corruption errors
[0]PETSC ERROR: likely location of problem given in stack below
[0]PETSC ERROR: ---------------------  Stack Frames
------------------------------------
[0]PETSC ERROR: Note: The EXACT line numbers in the stack are not available,
[0]PETSC ERROR:       INSTEAD the line number of the start of the function
[0]PETSC ERROR:       is given.
[0]PETSC ERROR: [0] PetscError line 352
/home/ubuntu/petsc/src/sys/error/err.c
[0]PETSC ERROR: [0] MatSetType line 42
/home/ubuntu/petsc/src/mat/interface/matreg.c
[0]PETSC ERROR: [0] MatSetFromOptions line 214
/home/ubuntu/petsc/src/mat/utils/gcreate.c
[0]PETSC ERROR: --------------------- Error Message
--------------------------------------------------------------
[0]PETSC ERROR: Signal received
[0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for
trouble shooting.
[0]PETSC ERROR: Petsc Development GIT revision: v3.10.3-1369-g58fe69bfc8
GIT Date: 2019-01-25 22:25:25 -0600
[0]PETSC ERROR: ./GMRES_PETSc on a arch-linux2-c-debug named
ip-172-31-86-226 by ubuntu Mon Jan 28 18:10:34 2019
[0]PETSC ERROR: Configure options --with-cc=gcc --download-mpich
--with-cuda=1 --with-cuda-dir=/usr/local/cuda-10.0/ --download-fblaslapack=1
[0]PETSC ERROR: #4 User provided function() line 0 in  unknown file
application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: Caught signal number 13 Broken Pipe: Likely while reading
or writing to a socket
[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[0]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind
[0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X
to find memory corruption errors
[0]PETSC ERROR: likely location of problem given in stack below
[0]PETSC ERROR: ---------------------  Stack Frames
------------------------------------
[0]PETSC ERROR: Note: The EXACT line numbers in the stack are not available,
[0]PETSC ERROR:       INSTEAD the line number of the start of the function
[0]PETSC ERROR:       is given.
[0]PETSC ERROR: [0] PetscError line 352
/home/ubuntu/petsc/src/sys/error/err.c
[0]PETSC ERROR: [0] MatSetType line 42
/home/ubuntu/petsc/src/mat/interface/matreg.c
[0]PETSC ERROR: [0] MatSetFromOptions line 214
/home/ubuntu/petsc/src/mat/utils/gcreate.c
[0]PETSC ERROR: --------------------- Error Message
--------------------------------------------------------------
[0]PETSC ERROR: Signal received
[0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for
trouble shooting.
[0]PETSC ERROR: Petsc Development GIT revision: v3.10.3-1369-g58fe69bfc8
GIT Date: 2019-01-25 22:25:25 -0600
[0]PETSC ERROR: ./GMRES_PETSc on a arch-linux2-c-debug named
ip-172-31-86-226 by ubuntu Mon Jan 28 18:10:34 2019
[0]PETSC ERROR: Configure options --with-cc=gcc --download-mpich
--with-cuda=1 --with-cuda-dir=/usr/local/cuda-10.0/ --download-fblaslapack=1
[0]PETSC ERROR: #5 User provided function() line 0 in  unknown file
application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0
[cli_0]: write_line error; fd=9 buf=:cmd=abort exitcode=59
:
system msg for write_line failure : Broken pipe

Any help will be greatly appreciated.

Regards,

-- 
*Najeeb Ahmad*

*Research and Teaching Assistant*
*PARallel and MultiCORE Computing Laboratory (ParCoreLab) *

*Computer Science and Engineering*
*Koç University, Istanbul, Turkey*
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