[petsc-users] "Could not find a suitable archiver. Use --with-arto specify an archiver"
avatar
648934229 at qq.com
Thu Oct 25 21:53:45 CDT 2018
Thank Satish. I would like to call Matlab function in Pestc. For example, calculating the condition number of a petsc matrix.
When I comment out the test from configuration script, I got the following problem. And the attached is the LOG file.
===============================================================================
Configuring PETSc to compile on your system
===============================================================================
TESTING: configureLibrary from config.packages.Matlab(config/BuildSystem/config/packages/Matlab.py:35) *******************************************************************************
CONFIGURATION CRASH (Please send configure.log to petsc-maint at mcs.anl.gov)
*******************************************************************************
------------------ Original ------------------
From: "Balay, Satish";<balay at mcs.anl.gov>;
Date: Oct 26, 2018
To: "avatar"<648934229 at qq.com>;
Cc: "petsc-users"<petsc-users at mcs.anl.gov>;
Subject: Re: [petsc-users] "Could not find a suitable archiver. Use --with-arto specify an archiver"
Presumably the error occurs after you type 'exit' from the terminal.
I'm not sure what to suggest. Having tools that break - is not ideal.
You could edit configure script - and bypass this check.
But what is your requirement wrt petsc and matlab?
Perhaps other petsc developers can guide you towards a suitable path.
Satish
On Fri, 26 Oct 2018, avatar wrote:
> Satish,
>
>
> If I just run, /Applications/MATLAB_R2018a.app/bin/matlab -nojvm -nodisplay, then Matlab can run normally in the terminal as
> Scott-Grad-MBP:~ zhihui$ /Applications/MATLAB_R2018a.app/bin/matlab -nojvm -nodisplay
>
>
> < M A T L A B (R) >
> Copyright 1984-2018 The MathWorks, Inc.
> R2018a (9.4.0.813654) 64-bit (maci64)
> February 23, 2018
>
>
>
>
> For online documentation, see http://www.mathworks.com/support
> For product information, visit www.mathworks.com.
>
>
> >>
>
>
>
>
>
>
>
>
>
> ------------------ Original ------------------
> From: "Balay, Satish";<balay at mcs.anl.gov>;
> Date: Oct 26, 2018
> To: "avatar"<648934229 at qq.com>;
> Cc: "petsc-users"<petsc-users at mcs.anl.gov>;
> Subject: Re: [petsc-users] "Could not find a suitable archiver. Use --with-arto specify an archiver"
>
>
>
> >>>>>>>>>>>>>>
> Testing Matlab at /Applications/MATLAB_R2018a.app
> Executing: /Applications/MATLAB_R2018a.app/bin/matlab -nojvm -nodisplay -r "display(['Version ' version]); exit"
> stdout:
> < M A T L A B (R) >
> Copyright 1984-2018 The MathWorks, Inc.
> R2018a (9.4.0.813654) 64-bit (maci64)
> February 23, 2018
>
> For online documentation, see http://www.mathworks.com/support
> For product information, visit www.mathworks.com.
>
> Version 9.4.0.813654 (R2018a)
> WARNING: Found Matlab at /Applications/MATLAB_R2018a.app but unable to run
> <<<<<<<<<<<<<<<<<
>
>
> So configure attempted to run Matlab - and perhaps got an error. What do you get if you run this manually?
>
>
> /Applications/MATLAB_R2018a.app/bin/matlab -nojvm -nodisplay -r "display(['Version ' version]); exit"
> echo $?
>
> Satish
>
> On Fri, 26 Oct 2018, avatar wrote:
>
> > Hi Satish,
> >
> >
> > The attached is the whole configure.log file. I could not past it here because it is too big and crash my webpage. I could not use the latest version right now, because the project is maintained by other people. If I update petsc, I will break the whole project. But we will use the latest version when the maintenance guys update the dependences.
> >
> >
> > Thank you.
> >
> >
> >
> >
> > ------------------ Original ------------------
> > From: "Balay, Satish";<balay at mcs.anl.gov>;
> > Date: Oct 26, 2018
> > To: "avatar"<648934229 at qq.com>;
> > Cc: "petsc-users"<petsc-users at mcs.anl.gov>;
> > Subject: Re: [petsc-users] "Could not find a suitable archiver. Use --with-arto specify an archiver"
> >
> >
> >
> > 1. You need to send us the complete log.
> >
> > 2. Also use current release - petsc-3.10 [not 3.8]
> >
> > Satish
> >
> > On Fri, 26 Oct 2018, avatar wrote:
> >
> > > Scott-Grad-MBP:petsc-3.8.3 zhihui$ ./configure --with-matlab-dir=/Applications/MATLAB_R2018a.app/
> > > ===============================================================================
> > > Configuring PETSc to compile on your system
> > > ===============================================================================
> > > TESTING: configureLibrary from config.packages.Matlab(config/BuildSystem/config/*******************************************************************************
> > > UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details):
> > > -------------------------------------------------------------------------------
> > > You set a value for --with-matlab-dir, but /Applications/MATLAB_R2018a.app cannot be used
> > > *******************************************************************************
> > >
> > >
> > >
> > > Part of the log file as follow
> > >
> > >
> > > #ifndef PETSC_HAVE_MPI_REDUCE_SCATTER
> > > #define PETSC_HAVE_MPI_REDUCE_SCATTER 1
> > > #endif
> > >
> > >
> > > #ifndef PETSC_HAVE_MPI_COMBINER_DUP
> > > #define PETSC_HAVE_MPI_COMBINER_DUP 1
> > > #endif
> > >
> > >
> > > #ifndef PETSC_HAVE_MPIIO
> > > #define PETSC_HAVE_MPIIO 1
> > > #endif
> > >
> > >
> > > #ifndef PETSC_HAVE_MPI_COMM_SPAWN
> > > #define PETSC_HAVE_MPI_COMM_SPAWN 1
> > > #endif
> > >
> > >
> > > #ifndef PETSC_HAVE_MPI_FINT
> > > #define PETSC_HAVE_MPI_FINT 1
> > > #endif
> > >
> > >
> > > #ifndef PETSC_HAVE_MPI_IBARRIER
> > > #define PETSC_HAVE_MPI_IBARRIER 1
> > > #endif
> > >
> > >
> > > #ifndef PETSC_HAVE_MPI_ALLTOALLW
> > > #define PETSC_HAVE_MPI_ALLTOALLW 1
> > > #endif
> > >
> > >
> > > #ifndef PETSC_HAVE_OMPI_RELEASE_VERSION
> > > #define PETSC_HAVE_OMPI_RELEASE_VERSION 2
> > > #endif
> > >
> > >
> > > #ifndef PETSC_HAVE_MPI_REDUCE_LOCAL
> > > #define PETSC_HAVE_MPI_REDUCE_LOCAL 1
> > > #endif
> > >
> > >
> > > #ifndef PETSC_HAVE_MPI_REPLACE
> > > #define PETSC_HAVE_MPI_REPLACE 1
> > > #endif
> > >
> > >
> > > #ifndef PETSC_HAVE_MPI_EXSCAN
> > > #define PETSC_HAVE_MPI_EXSCAN 1
> > > #endif
> > >
> > >
> > > #ifndef PETSC_HAVE_MPI_C_DOUBLE_COMPLEX
> > > #define PETSC_HAVE_MPI_C_DOUBLE_COMPLEX 1
> > > #endif
> > >
> > >
> > > #ifndef PETSC_HAVE_MPI_FINALIZED
> > > #define PETSC_HAVE_MPI_FINALIZED 1
> > > #endif
> > >
> > >
> > > #ifndef PETSC_USE_INFO
> > > #define PETSC_USE_INFO 1
> > > #endif
> > >
> > >
> > > #ifndef PETSC_Alignx
> > > #define PETSC_Alignx(a,b)
> > > #endif
> > >
> > >
> > > #ifndef PETSC_USE_BACKWARD_LOOP
> > > #define PETSC_USE_BACKWARD_LOOP 1
> > > #endif
> > >
> > >
> > > #ifndef PETSC_USE_DEBUG
> > > #define PETSC_USE_DEBUG 1
> > > #endif
> > >
> > >
> > > #ifndef PETSC_USE_LOG
> > > #define PETSC_USE_LOG 1
> > > #endif
> > >
> > >
> > > #ifndef PETSC_IS_COLOR_VALUE_TYPE_F
> > > #define PETSC_IS_COLOR_VALUE_TYPE_F integer2
> > > #endif
> > >
> > >
> > > #ifndef PETSC_IS_COLOR_VALUE_TYPE
> > > #define PETSC_IS_COLOR_VALUE_TYPE short
> > > #endif
> > >
> > >
> > > #ifndef PETSC_USE_CTABLE
> > > #define PETSC_USE_CTABLE 1
> > > #endif
> > >
> > >
> > > #ifndef PETSC_MEMALIGN
> > > #define PETSC_MEMALIGN 16
> > > #endif
> > >
> > >
> > > #ifndef PETSC_LEVEL1_DCACHE_LINESIZE
> > > #define PETSC_LEVEL1_DCACHE_LINESIZE 32
> > > #endif
> > >
> > >
> > > #ifndef PETSC_LEVEL1_DCACHE_SIZE
> > > #define PETSC_LEVEL1_DCACHE_SIZE 32768
> > > #endif
> > >
> > >
> > > #ifndef PETSC_LEVEL1_DCACHE_ASSOC
> > > #define PETSC_LEVEL1_DCACHE_ASSOC 2
> > > #endif
> > >
> > >
> > > #ifndef PETSC_HAVE_CLOSURE
> > > #define PETSC_HAVE_CLOSURE 1
> > > #endif
> > >
> > >
> > > #ifndef PETSC__BSD_SOURCE
> > > #define PETSC__BSD_SOURCE 1
> > > #endif
> > >
> > >
> > > #ifndef PETSC__DEFAULT_SOURCE
> > > #define PETSC__DEFAULT_SOURCE 1
> > > #endif
> > >
> > >
> > > #ifndef PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT
> > > #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1
> > > #endif
> > >
> > >
> > > #ifndef PETSC_HAVE_GFORTRAN_IARGC
> > > #define PETSC_HAVE_GFORTRAN_IARGC 1
> > > #endif
> > >
> > >
> > > #ifndef PETSC_USE_BYTES_FOR_SIZE
> > > #define PETSC_USE_BYTES_FOR_SIZE 1
> > > #endif
> > >
> > >
> > > #ifndef PETSC_HAVE_SYS_SYSCTL_H
> > > #define PETSC_HAVE_SYS_SYSCTL_H 1
> > > #endif
> > >
> > >
> > > #endif
> > > **** C specific Configure header /var/folders/z_/2vhmh9zx3kx3h80k5wbkjmtr0000gp/T/petsc-yrHkm7/conffix.h ****
> > > #if !defined(INCLUDED_UNKNOWN)
> > > #define INCLUDED_UNKNOWN
> > >
> > >
> > > #if defined(__cplusplus)
> > > extern "C" {
> > > }
> > > #else
> > > #endif
> > > #endif
> > > *******************************************************************************
> > > UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details):
> > > -------------------------------------------------------------------------------
> > > You set a value for --with-matlab-dir, but /Applications/MATLAB_R2018a.app cannot be used
> > > *******************************************************************************
> > > File "./config/configure.py", line 393, in petsc_configure
> > > framework.configure(out = sys.stdout)
> > > File "/Users/zhihui/igx/deps/srcs/petsc-3.8.3/config/BuildSystem/config/framework.py", line 1097, in configure
> > > self.processChildren()
> > > File "/Users/zhihui/igx/deps/srcs/petsc-3.8.3/config/BuildSystem/config/framework.py", line 1086, in processChildren
> > > self.serialEvaluation(self.childGraph)
> > > File "/Users/zhihui/igx/deps/srcs/petsc-3.8.3/config/BuildSystem/config/framework.py", line 1067, in serialEvaluation
> > > child.configure()
> > > File "/Users/zhihui/igx/deps/srcs/petsc-3.8.3/config/BuildSystem/config/package.py", line 857, in configure
> > > self.executeTest(self.configureLibrary)
> > > File "/Users/zhihui/igx/deps/srcs/petsc-3.8.3/config/BuildSystem/config/base.py", line 126, in executeTest
> > > ret = test(*args,**kargs)
> > > File "/Users/zhihui/igx/deps/srcs/petsc-3.8.3/config/BuildSystem/config/packages/Matlab.py", line 40, in configureLibrary
> > > for matlab in self.generateGuesses():
> > > File "/Users/zhihui/igx/deps/srcs/petsc-3.8.3/config/BuildSystem/config/packages/Matlab.py", line 23, in generateGuesses
> > > raise RuntimeError('You set a value for --with-matlab-dir, but '+self.argDB['with-matlab-dir']+' cannot be used\n')
> > > ================================================================================
> > > Finishing Configure Run at Thu Oct 25 18:48:02 2018
> > > ================================================================================
> > >
> > >
> > >
> > >
> > >
> > >
> > >
> > > ------------------ Original ------------------
> > > From: "Balay, Satish";<balay at mcs.anl.gov>;
> > > Date: Oct 26, 2018
> > > To: "avatar"<648934229 at qq.com>;
> > > Cc: "petsc-users"<petsc-users at mcs.anl.gov>;
> > > Subject: Re: [petsc-users] "Could not find a suitable archiver. Use --with-arto specify an archiver"
> > >
> > >
> > >
> > > On Fri, 26 Oct 2018, avatar wrote:
> > >
> > > > Scott-Grad-MBP:bin zhihui$ pwd
> > > > /Applications/MATLAB_R2018a.app/bin
> > >
> > >
> > > Sorry - you need
> > >
> > > --with-matlab-dir=/Applications/MATLAB_R2018a.app/
> > >
> > > Satish
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