[petsc-users] Compiling PETSc with strumpack in ORNL Frontier

Barry Smith bsmith at petsc.dev
Fri Apr 5 14:46:46 CDT 2024


   Please send the entire configure.log 

> On Apr 5, 2024, at 3:42 PM, Vanella, Marcos (Fed) via petsc-users <petsc-users at mcs.anl.gov> wrote:
> 
> This Message Is From an External Sender
> This message came from outside your organization.
> Hi all, we are trying to compile PETSc in Frontier using the structured matrix hierarchical solver strumpack, which uses GPU and might be a good candidate for our Poisson discretization.
> The list of libs I used for PETSc in this case is:
> 
> $./configure COPTFLAGS="-O3" CXXOPTFLAGS="-O3" FOPTFLAGS="-O3" FCOPTFLAGS="-O3" HIPOPTFLAGS="-O3 --offload-arch=gfx90a" --with-debugging=0 --with-cc=cc --with-cxx=CC --with-fc=ftn --with-hip --with-hip-arch=gfx908 --with-hipc=hipcc   --LIBS="-L${MPICH_DIR}/lib -lmpi ${CRAY_XPMEM_POST_LINK_OPTS} -lxpmem ${PE_MPICH_GTL_DIR_amd_gfx90a} ${PE_MPICH_GTL_LIBS_amd_gfx90a}" --download-kokkos --download-kokkos-kernels --download-suitesparse --download-hypre --download-superlu_dist --download-strumpack --download-metis --download-slate --download-magma --download-parmetis --download-ptscotch --download-zfp --download-butterflypack --with-openmp-dir=/opt/cray/pe/gcc/12.2.0/snos --download-scalapack --download-cmake --force
> 
> I'm getting an error at configure time:
> 
> ...
>       Trying to download https://urldefense.us/v3/__https://github.com/liuyangzhuan/ButterflyPACK__;!!G_uCfscf7eWS!Zixr16YdQu3fiyHhdpuVPSpY2C6CE_eyJBpOizV54Ljkkw_4u9KcWP5QRT1Ukap5cNKYJ7t3If6OkGXrUyG8E-A$  <https://urldefense.us/v3/__https://github.com/liuyangzhuan/ButterflyPACK__;!!G_uCfscf7eWS!cW5KuKKMbmDa8n59SJGArXdSxVT_-V0qH3vt1-LE-CAr4wShO2pTXN3GvI0bVCwUh6RWH6z2URqBczHnVEyXXKAJ2LN7JnSj$> for BUTTERFLYPACK
> =============================================================================================
> =============================================================================================
>              Configuring BUTTERFLYPACK with CMake; this may take several minutes
> =============================================================================================
> =============================================================================================
>             Compiling and installing BUTTERFLYPACK; this may take several minutes
> =============================================================================================
> =============================================================================================
>             Trying to download https://urldefense.us/v3/__https://github.com/pghysels/STRUMPACK__;!!G_uCfscf7eWS!Zixr16YdQu3fiyHhdpuVPSpY2C6CE_eyJBpOizV54Ljkkw_4u9KcWP5QRT1Ukap5cNKYJ7t3If6OkGXrA0zDldI$  <https://urldefense.us/v3/__https://github.com/pghysels/STRUMPACK__;!!G_uCfscf7eWS!cW5KuKKMbmDa8n59SJGArXdSxVT_-V0qH3vt1-LE-CAr4wShO2pTXN3GvI0bVCwUh6RWH6z2URqBczHnVEyXXKAJ2FeUr7dA$> for STRUMPACK
> =============================================================================================
> =============================================================================================
>                Configuring STRUMPACK with CMake; this may take several minutes
> =============================================================================================
> =============================================================================================
>               Compiling and installing STRUMPACK; this may take several minutes
> =============================================================================================
> 
> *********************************************************************************************
>            UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details):
> ---------------------------------------------------------------------------------------------
>                                Error running make on  STRUMPACK
> *********************************************************************************************
> 
>  Looking in the configure.log file I see error like this related to strumpack compilation:
> 
> /opt/cray/pe/craype/2.7.19/bin/CC -D__HIP_PLATFORM_AMD__=1 -D__HIP_PLATFORM_HCC__=1 -Dstrumpack_EXPORTS -I/autofs/nccs-svm1_home1/vanellam/Software/petsc/arch-linux-frontier-opt-gcc-direct/externalpackages/git.strumpack/src -I/autofs/nccs-svm1_home1/vanellam/Software/petsc/arch-linux-frontier-opt-gcc-direct/externalpackages/git.strumpack/petsc-build -isystem /autofs/nccs-svm1_home1/vanellam/Software/petsc/arch-linux-frontier-opt-gcc-direct/include -isystem /opt/rocm-5.4.0/include -isystem /opt/rocm-5.4.0/hip/include -isystem /opt/rocm-5.4.0/llvm/lib/clang/15.0.0/.. -Wno-lto-type-mismatch -Wno-psabi -O3 -fPIC -fopenmp -Wno-lto-type-mismatch -Wno-psabi -O3 -fPIC -fopenmp -fPIC -Wall -Wno-overloaded-virtual -fopenmp -x hip --offload-arch=gfx900 --offload-arch=gfx906 --offload-arch=gfx908 --offload-arch=gfx90a --offload-arch=gfx1030 -MD -MT CMakeFiles/strumpack.dir/src/clustering/NeighborSearch.cpp.o -MF CMakeFiles/strumpack.dir/src/clustering/NeighborSearch.cpp.o.d -o CMakeFiles/strumpack.dir/src/clustering/NeighborSearch.cpp.o -c /autofs/nccs-svm1_home1/vanellam/Software/petsc/arch-linux-frontier-opt-gcc-direct/externalpackages/git.strumpack/src/clustering/NeighborSearch.cpp
> gmake[2]: Leaving directory '/autofs/nccs-svm1_home1/vanellam/Software/petsc/arch-linux-frontier-opt-gcc-direct/externalpackages/git.strumpack/petsc-build'
> gmake[1]: Leaving directory '/autofs/nccs-svm1_home1/vanellam/Software/petsc/arch-linux-frontier-opt-gcc-direct/externalpackages/git.strumpack/petsc-build'
> stdout:
> g++: error: unrecognized command-line option '--offload-arch=gfx900'
> g++: error: unrecognized command-line option '--offload-arch=gfx900'
> g++: error: unrecognized command-line option '--offload-arch=gfx900'
> 
> It seems the configure is picking up CC (g++) instead of hipcc as the compiler for strumpack.
> 
> I wonder if anyone has come across this issue or has any suggestions?
> Thanks!
> Marcos

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