[petsc-users] Error while building PETSc with MATLAB

INTURU SRINIVAS 20PHD0548 inturu.srinivas2020 at vitstudent.ac.in
Mon Aug 28 10:59:57 CDT 2023


Hello,

I want to build PETSc with MATLAB for working on the simulation using IBAMR
open software. While building the PETSc, using the following

export PETSC_DIR=$PWD
export PETSC_ARCH=linux-debug
./configure \
  --CC=$HOME/sfw/linux/openmpi/4.1.4/bin/mpicc \
  --CXX=$HOME/sfw/linux/openmpi/4.1.4/bin/mpicxx \
  --FC=$HOME/sfw/linux/openmpi/4.1.4/bin/mpif90 \
  --with-debugging=1 \
  --download-hypre=1 \
  --download-fblaslapack=1 \
  --with-x=0 \
  --with-matlab-dir=/usr/local/MATLAB/R2020b/
  --with-matlab-engine=1
  --with-matlab-engine-dir=/usr/local/MATLAB/R2020b/extern/engines/

make -j4
make -j4 test

I got the following error
CLINKER linux-debug/tests/tao/leastsquares/tutorials/matlab/matlab_ls_test
/usr/bin/ld:
linux-debug/tests/tao/leastsquares/tutorials/matlab/matlab_ls_test.o: in
function `EvaluateResidual':
/home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:32:
undefined reference to `PetscMatlabEnginePut'
/usr/bin/ld:
/home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:33:
undefined reference to `PetscMatlabEngineEvaluate'
/usr/bin/ld:
/home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:35:
undefined reference to `PetscMatlabEngineGet'
/usr/bin/ld:
linux-debug/tests/tao/leastsquares/tutorials/matlab/matlab_ls_test.o: in
function `EvaluateJacobian':
/home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:46:
undefined reference to `PetscMatlabEnginePut'
/usr/bin/ld:
/home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:47:
undefined reference to `PetscMatlabEngineEvaluate'
/usr/bin/ld:
/home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:49:
undefined reference to `PetscMatlabEngineGet'
/usr/bin/ld:
linux-debug/tests/tao/leastsquares/tutorials/matlab/matlab_ls_test.o: in
function `TaoPounders':
/home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:75:
undefined reference to `PetscMatlabEngineGet'
/usr/bin/ld:
linux-debug/tests/tao/leastsquares/tutorials/matlab/matlab_ls_test.o: in
function `main':
/home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:126:
undefined reference to `PetscMatlabEngineCreate'
/usr/bin/ld:
/home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:127:
undefined reference to `PetscMatlabEngineEvaluate'
/usr/bin/ld:
/home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:139:
undefined reference to `PetscMatlabEngineEvaluate'
/usr/bin/ld:
/home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:140:
undefined reference to `PetscMatlabEngineGetArray'
/usr/bin/ld:
/home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:142:
undefined reference to `PetscMatlabEngineGetArray'
/usr/bin/ld:
/home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:144:
undefined reference to `PetscMatlabEngineGetArray'
/usr/bin/ld:
/home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:146:
undefined reference to `PetscMatlabEngineGetArray'
/usr/bin/ld:
/home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:148:
undefined reference to `PetscMatlabEngineGetArray'
/usr/bin/ld:
/home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:154:
undefined reference to `PetscMatlabEngineEvaluate'
/usr/bin/ld:
/home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:157:
undefined reference to `PetscMatlabEngineEvaluate'
/usr/bin/ld:
/home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:158:
undefined reference to `PetscMatlabEngineDestroy'

collect2: error: ld returned 1 exit status
make: *** [gmakefile.test:185:
linux-debug/tests/tao/leastsquares/tutorials/matlab/matlab_ls_test] Error 1
make: *** Waiting for unfinished jobs....

Please help me to solve this issue

Thank you
Srinivas

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