[petsc-users] Changes on direct solver interface???

[Satish Balay]

please run the code in debugger and obtain a stack trace.

Satish

On Fri, 1 Apr 2016, Xujun Zhao wrote:

> Hi all,
> 
> Are there any changes on the PETSc direct solver interface, for example,
> with superLU_dist and MUMPS. I found that my libMesh code failed with both
> of them, but still works with iterative solver (GMRES by default). Thanks a
> lot.
> 
> Best,
> Xujun
> 
> --------------------------------------------------------------------------------------------------------------
> 
> [0]PETSC ERROR:
> ------------------------------------------------------------------------
> 
> [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
> probably memory access out of range
> 
> [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
> 
> [0]PETSC ERROR: or see
> http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind
> 
> [0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X
> to find memory corruption errors
> 
> [0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and
> run
> 
> [0]PETSC ERROR: to get more information on the crash.
> 
> [0]PETSC ERROR: --------------------- Error Message
> --------------------------------------------------------------
> 
> [0]PETSC ERROR: Signal received
> 
> [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for
> trouble shooting.
> 
> [0]PETSC ERROR: Petsc Release Version 3.6.3, unknown
> 
> [0]PETSC ERROR: ./example-opt on a arch-darwin-c-opt named
> mcswl105.mcs.anl.gov by xzhao Fri Apr  1 15:57:40 2016
> 
> [0]PETSC ERROR: Configure options --with-cc=gcc --with-cxx=g++
> --with-fc=gfortran --with-cxx-dialect=C++11 --download-mpich
> --download-fblaslapack --download-scalapack --download-mumps
> --download-superlu_dist --download-hypre --download-ml --download-metis
> --download-parmetis --download-triangle --download-chaco
> --download-elemental --with-debugging=0
> 
> [0]PETSC ERROR: #1 User provided function() line 0 in  unknown file
> 
> application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0
> 
> [cli_0]: aborting job:
> 
> application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0
> 
> [1]PETSC ERROR:
> ------------------------------------------------------------------------
> 
> [1]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
> probably memory access out of range
> 
> [1]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
> 
> [1]PETSC ERROR: or see
> http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind
> 
> [1]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X
> to find memory corruption errors
> 
> [1]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and
> run
> 
> [1]PETSC ERROR: to get more information on the crash.
> 
> [1]PETSC ERROR: --------------------- Error Message
> --------------------------------------------------------------
> 
> [1]PETSC ERROR: Signal received
> 
> [1]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for
> trouble shooting.
> 
> [1]PETSC ERROR: Petsc Release Version 3.6.3, unknown
> 
> [1]PETSC ERROR: ./example-opt on a arch-darwin-c-opt named
> mcswl105.mcs.anl.gov by xzhao Fri Apr  1 15:57:40 2016
> 
> [1]PETSC ERROR: Configure options --with-cc=gcc --with-cxx=g++
> --with-fc=gfortran --with-cxx-dialect=C++11 --download-mpich
> --download-fblaslapack --download-scalapack --download-mumps
> --download-superlu_dist --download-hypre --download-ml --download-metis
> --download-parmetis --download-triangle --download-chaco
> --download-elemental --with-debugging=0
> 
> [1]PETSC ERROR: #1 User provided function() line 0 in  unknown file
> 
> application called MPI_Abort(MPI_COMM_WORLD, 59) - process 1
> 
> [cli_1]: aborting job:
> 
> application called MPI_Abort(MPI_COMM_WORLD, 59) - process 1
> 
> 
>  -------------------------------------------------------------------------------------------------------------------
> 
> | Processor id:   0
>                                         |
> 
> | Num Processors: 4
>                                         |
> 
> | Time:           Fri Apr  1 15:57:40 2016
>                                         |
> 
> | OS:             Darwin
>                                         |
> 
> | HostName:       mcswl105.mcs.anl.gov
>                                         |
> 
> | OS Release:     15.2.0
>                                         |
> 
> | OS Version:     Darwin Kernel Version 15.2.0: Fri Nov 13 19:56:56 PST
> 2015; root:xnu-3248.20.55~2/RELEASE_X86_64  |
> 
> | Machine:        x86_64
>                                         |
> 
> | Username:       xzhao
>                                         |
> 
> | Configuration:  ./configure
> '--prefix=/Users/xzhao/software/libmesh/libmesh-dev'
>           |
> 
> |  '--with-methods=opt'
>                                         |
> 
> |  '--enable-everything'
>                                         |
> 
> |  '--enable-parmesh'
>                                         |
> 
> |  '--disable-strict-lgpl'
>                                         |
> 
> |  '--with-vtk-include=/usr/local/include/vtk-6.2'
>                                         |
> 
> |  '--with-vtk-lib=/usr/local/lib'
>                                         |
> 
> |  'PETSC_DIR=/Users/xzhao/software/petsc/petsc-dev'
>                                         |
> 
> |  'PETSC_ARCH=arch-darwin-c-opt'
>                                         |
> 
> |  'SLEPC_DIR=/Users/xzhao/software/slepc/slepc-3.6'
>                                         |
> 
>  -------------------------------------------------------------------------------------------------------------------
>