[petsc-users] Unable to configure PETSc with CUDA: Problem with thrust directory
Ashwin Srinath
ashwinsrnth at gmail.com
Fri Aug 29 09:40:12 CDT 2014
Hello,
My original message is awaiting approval as attaching configure.log made it
too large. I hope it's okay for me to repeat here:
I'm having a similar issue with CUDA 6.0. PETSc configured just fine with
version 5.0 and 5.5, and I'm using an almost identical configure command
(only changing --with-cuda-dir). I get the following error:
CUDA version error: PETSC currently requires CUDA version 4.0 or higher -
when compiling with CUDA
I suspect the problem might be with cuda.py checking for my CUDA version,
but I can't be sure.
Any suggestions?
Thanks,
Ashwin
On Fri, Aug 29, 2014 at 10:31 AM, Matthew Knepley <knepley at gmail.com> wrote:
> On Fri, Aug 29, 2014 at 9:35 AM, Dominic Meiser <dmeiser at txcorp.com>
> wrote:
>
>> On 08/29/2014 08:08 AM, Matthew Knepley wrote:
>>
>> On Fri, Aug 29, 2014 at 8:35 AM, Christophe Ortiz <
>> christophe.ortiz at ciemat.es> wrote:
>>
>>> Sorry about that.
>>>
>>> Please find in attachment the configure.log file. Hope it will help
>>> you find the error.
>>>
>>
>> Here is the problem:
>>
>> Possible ERROR while running preprocessor: nvcc warning : The
>> 'compute_10' and 'sm_10' architectures are deprecated, and may be removed
>> in a future release.
>> error message = {nvcc warning : The 'compute_10' and 'sm_10'
>> architectures are deprecated, and may be removed in a future release.
>> }
>>
>> meaning the nvcc compiler does not "work" as provided. Here is a
>> workaround:
>>
>> --with-cudac='nvcc --arch=sm_35'
>>
>> Dominic, I think that thrust.py should depend on cuda.py. Do you know
>> why it does not?
>>
>> In principle you are right, thrust.py should depend on cuda.py.
>>
>> However, in my opinion, thrust.py should go away as a separate package
>> altogether. Thrust is shipped as part of any recent version of the cuda
>> toolkit (I forget since which version, Paul might know) and it's always
>> installed in $CUDA_TOOLKIT_ROOT/include/thrust. Thus we can automatically
>> deduct the thrust location from the cuda location. Thrust should be
>> considered part of cuda.
>>
>
> That does not mean the configure modules should be organized that way.
> Thrust is a package included in CUDA, thus
> it should have an independent module, but depend on the CUDA module.
>
> Matt
>
>
>> Cheers,
>> Dominic
>>
>>
>> Thanks,
>>
>> Matt
>>
>>
>>
>>> Christophe
>>>
>>> CIEMAT
>>> Laboratorio Nacional de Fusión por Confinamiento Magnético
>>> Unidad de Materiales
>>> Edificio 2 - Planta 0 - Despacho 28m
>>> Avenida Complutense 40,
>>> 28040 Madrid, Spain
>>> Tel: +34 91496 2582 <%2B34%2091496%202582>
>>> Fax: +34 91346 6442 <%2B34%2091346%206442>
>>>
>>> --
>>> Q
>>> Por favor, piense en el medio ambiente antes de imprimir este mensaje.
>>> Please consider the environment before printing this email.
>>>
>>>
>>> On Fri, Aug 29, 2014 at 3:28 PM, Matthew Knepley <knepley at gmail.com>
>>> wrote:
>>>
>>>> Always attach configure.log or we cannot see what went wrong.
>>>>
>>>> Matt
>>>>
>>>>
>>>> On Fri, Aug 29, 2014 at 2:35 AM, Christophe Ortiz <
>>>> christophe.ortiz at ciemat.es> wrote:
>>>>
>>>>> Hi Dominic and Paul,
>>>>>
>>>>> Thanks for your answers. Unfortunately, it did not work. Same error
>>>>> message related to the thrust directory:
>>>>>
>>>>>
>>>>> ./configure --with-x=1 --with-mpi=0 --with-cc=icc --with-cxx=icpc
>>>>> --with-clanguage=cxx --with-fc=ifort --with-cuda=1
>>>>> --with-cuda-dir=/usr/local/cuda-6.0 --with-cuda-arch=sm_35 --with-thrust=1
>>>>> --with-thrust-dir=/usr/local/cuda-6.0/include --with-cusp=1
>>>>> --with-cusp-dir=/usr/local/cuda-6.0/include --with-debugging=1
>>>>> --with-scalar-type=real --with-precision=double --download-fblaslapack
>>>>>
>>>>> ===============================================================================
>>>>> Configuring PETSc to compile on your system
>>>>>
>>>>>
>>>>> ===============================================================================
>>>>> TESTING: checkInclude from
>>>>> config.headers(config/BuildSystem/config/headers.py:86)
>>>>>
>>>>> *******************************************************************************
>>>>> UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log
>>>>> for details):
>>>>>
>>>>> -------------------------------------------------------------------------------
>>>>> --with-thrust-dir=/usr/local/cuda-6.0/include did not work
>>>>>
>>>>> *******************************************************************************
>>>>>
>>>>>
>>>>> I do not see what else to do...I have a standard CUDA installation
>>>>> that came with thrust.
>>>>> I am using ubuntu 12.04, I do not know if that could help.
>>>>> I tried with PETSc 3.4.1 and 3.5.1. Same problem.
>>>>>
>>>>> Christophe
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>> ------------------------------
>>>>>>
>>>>>> Message: 3
>>>>>> Date: Thu, 28 Aug 2014 08:38:12 -0600
>>>>>> From: Dominic Meiser <dmeiser at txcorp.com>
>>>>>> To: petsc-users at mcs.anl.gov
>>>>>> Subject: Re: [petsc-users] Unable to configure PETSc with CUDA:
>>>>>> Problem with thrust directory
>>>>>> Message-ID: <53FF3ED4.1090002 at txcorp.com>
>>>>>> Content-Type: text/plain; charset=UTF-8; format=flowed
>>>>>>
>>>>>> Can you try configuring with
>>>>>>
>>>>>> --with-thrust-dir=/usr/local/cuda-6.0/include
>>>>>>
>>>>>> I.e. omit the 'thrust' at the end of the path. Probably you'll need
>>>>>> the
>>>>>> same fix with cusp:
>>>>>>
>>>>>> --with-cusp-dir=/usr/local/cuda-6.0/include
>>>>>>
>>>>>> Cheers,
>>>>>> Dominic
>>>>>>
>>>>>
>>>>>
>>>>>
>>>>>>
>>>>>> On 08/28/2014 08:13 AM, Christophe Ortiz wrote:
>>>>>> > Hi all,
>>>>>> >
>>>>>> > I have implemented a problem of coupled diffusion equations in 1D
>>>>>> > using PETSc. I was able to configure PETSC with and without MPI. The
>>>>>> > code runs well in both cases.
>>>>>> >
>>>>>> > Now I would like to test CUDA but I am unable to configure it. I get
>>>>>> > an error message related to thrust directory.
>>>>>> >
>>>>>> > The options I use to configure are the following:
>>>>>> >
>>>>>> > --with-x=1 --with-mpi=0 --with-cc=icc --with-cxx=icpc
>>>>>> > --with-clanguage=cxx --with-fc=ifort --with-cuda=1
>>>>>> > --with-cuda-dir=/usr/local/cuda-6.0 --with-cuda-arch=sm_35
>>>>>> > --with-cudac=/usr/local/cuda/bin/nvcc --with-thrust=1
>>>>>> > --with-thrust-dir=/usr/local/cuda-6.0/include/thrust --with-cusp=1
>>>>>> > --with-cusp-dir=/usr/local/cuda-6.0/include/cusp
>>>>>> > --download-txpetscgpu=1 --with-debugging=1 --with-scalar-type=real
>>>>>> > --with-precision=double --download-f-blas-lapack
>>>>>> >
>>>>>> > The error message I get is:
>>>>>> >
>>>>>> >
>>>>>> ===============================================================================
>>>>>> > Configuring PETSc to compile on your system
>>>>>> >
>>>>>> ===============================================================================
>>>>>> > TESTING: checkInclude from
>>>>>> > config.headers(config/BuildSystem/config/headers.py:86)
>>>>>> >
>>>>>> *******************************************************************************
>>>>>> > UNABLE to CONFIGURE with GIVEN OPTIONS (see
>>>>>> configure.log
>>>>>> > for details):
>>>>>> >
>>>>>> -------------------------------------------------------------------------------
>>>>>> > --with-thrust-dir=/usr/local/cuda-6.0/include/thrust did not work
>>>>>> >
>>>>>> *******************************************************************************
>>>>>> >
>>>>>> >
>>>>>> > Did I miss something ?
>>>>>> > My GPU is a GeForce Titan Black and I am using CUDA 6.0.
>>>>>> >
>>>>>> > Many thanks in advance for your help.
>>>>>> > Christophe
>>>>>> >
>>>>>>
>>>>>>
>>>>>> --
>>>>>> Dominic Meiser
>>>>>> Tech-X Corporation
>>>>>> 5621 Arapahoe Avenue
>>>>>> Boulder, CO 80303
>>>>>> USA
>>>>>> Telephone: 303-996-2036
>>>>>> Fax: 303-448-7756
>>>>>> www.txcorp.com
>>>>>>
>>>>>>
>>>>>>
>>>>>> ------------------------------
>>>>>>
>>>>>> Message: 4
>>>>>> Date: Thu, 28 Aug 2014 08:30:40 -0600
>>>>>> From: Paul Mullowney <paulmullowney at gmail.com>
>>>>>> To: Dominic Meiser <dmeiser at txcorp.com>
>>>>>> Cc: petsc-users at mcs.anl.gov
>>>>>> Subject: Re: [petsc-users] Unable to configure PETSc with CUDA:
>>>>>> Problem with thrust directory
>>>>>> Message-ID:
>>>>>> <CAMJ8fwroFUxG-rpbMpaJEw=
>>>>>> 0aQdyNm9NMxMzsxWVGGPWZqhGCQ at mail.gmail.com>
>>>>>> Content-Type: text/plain; charset="utf-8"
>>>>>>
>>>>>> Also, get rid of --download-txpetscgpu=1. That doesn't exist anymore.
>>>>>> -Paul
>>>>>>
>>>>>>
>>>>>> On Thu, Aug 28, 2014 at 8:38 AM, Dominic Meiser <dmeiser at txcorp.com>
>>>>>> wrote:
>>>>>>
>>>>>> > Can you try configuring with
>>>>>> >
>>>>>> > --with-thrust-dir=/usr/local/cuda-6.0/include
>>>>>> >
>>>>>> > I.e. omit the 'thrust' at the end of the path. Probably you'll need
>>>>>> the
>>>>>> > same fix with cusp:
>>>>>> >
>>>>>> > --with-cusp-dir=/usr/local/cuda-6.0/include
>>>>>> >
>>>>>> > Cheers,
>>>>>> > Dominic
>>>>>> >
>>>>>> >
>>>>>> > On 08/28/2014 08:13 AM, Christophe Ortiz wrote:
>>>>>> >
>>>>>> >> Hi all,
>>>>>> >>
>>>>>> >> I have implemented a problem of coupled diffusion equations in 1D
>>>>>> using
>>>>>> >> PETSc. I was able to configure PETSC with and without MPI. The
>>>>>> code runs
>>>>>> >> well in both cases.
>>>>>> >>
>>>>>> >> Now I would like to test CUDA but I am unable to configure it. I
>>>>>> get an
>>>>>> >> error message related to thrust directory.
>>>>>> >>
>>>>>> >> The options I use to configure are the following:
>>>>>> >>
>>>>>> >> --with-x=1 --with-mpi=0 --with-cc=icc --with-cxx=icpc
>>>>>> >> --with-clanguage=cxx --with-fc=ifort --with-cuda=1
>>>>>> >> --with-cuda-dir=/usr/local/cuda-6.0 --with-cuda-arch=sm_35
>>>>>> >> --with-cudac=/usr/local/cuda/bin/nvcc --with-thrust=1
>>>>>> >> --with-thrust-dir=/usr/local/cuda-6.0/include/thrust --with-cusp=1
>>>>>> >> --with-cusp-dir=/usr/local/cuda-6.0/include/cusp
>>>>>> --download-txpetscgpu=1
>>>>>> >> --with-debugging=1 --with-scalar-type=real --with-precision=double
>>>>>> >> --download-f-blas-lapack
>>>>>> >>
>>>>>> >> The error message I get is:
>>>>>> >>
>>>>>> >> ============================================================
>>>>>> >> ===================
>>>>>> >> Configuring PETSc to compile on your system
>>>>>> >> ============================================================
>>>>>> >> ===================
>>>>>> >> TESTING: checkInclude from config.headers(config/
>>>>>> >> BuildSystem/config/headers.py:86) ******************************
>>>>>> >> *************************************************
>>>>>> >> UNABLE to CONFIGURE with GIVEN OPTIONS (see
>>>>>> configure.log for
>>>>>> >> details):
>>>>>> >> ------------------------------------------------------------
>>>>>> >> -------------------
>>>>>> >> --with-thrust-dir=/usr/local/cuda-6.0/include/thrust did not work
>>>>>> >> ************************************************************
>>>>>> >> *******************
>>>>>> >>
>>>>>> >>
>>>>>> >> Did I miss something ?
>>>>>> >> My GPU is a GeForce Titan Black and I am using CUDA 6.0.
>>>>>> >>
>>>>>> >> Many thanks in advance for your help.
>>>>>> >> Christophe
>>>>>> >>
>>>>>> >>
>>>>>> >
>>>>>> > --
>>>>>> > Dominic Meiser
>>>>>> > Tech-X Corporation
>>>>>> > 5621 Arapahoe Avenue
>>>>>> > Boulder, CO 80303
>>>>>> > USA
>>>>>> > Telephone: 303-996-2036
>>>>>> > Fax: 303-448-7756
>>>>>> > www.txcorp.com
>>>>>> >
>>>>>> >
>>>>>> -------------- next part --------------
>>>>>> An HTML attachment was scrubbed...
>>>>>> URL: <
>>>>>> http://lists.mcs.anl.gov/pipermail/petsc-users/attachments/20140828/70c223ee/attachment-0001.html
>>>>>> >
>>>>>>
>>>>>> ------------------------------
>>>>>>
>>>>>> _______________________________________________
>>>>>> petsc-users mailing list
>>>>>> petsc-users at mcs.anl.gov
>>>>>> https://lists.mcs.anl.gov/mailman/listinfo/petsc-users
>>>>>>
>>>>>>
>>>>>> End of petsc-users Digest, Vol 68, Issue 63
>>>>>> *******************************************
>>>>>>
>>>>>> ----------------------------
>>>>>> Confidencialidad:
>>>>>> Este mensaje y sus ficheros adjuntos se dirige exclusivamente a su
>>>>>> destinatario y puede contener información privilegiada o confidencial. Si
>>>>>> no es vd. el destinatario indicado, queda notificado de que la utilización,
>>>>>> divulgación y/o copia sin autorización está prohibida en virtud de la
>>>>>> legislación vigente. Si ha recibido este mensaje por error, le rogamos que
>>>>>> nos lo comunique inmediatamente respondiendo al mensaje y proceda a su
>>>>>> destrucción.
>>>>>>
>>>>>> Disclaimer:
>>>>>> This message and its attached files is intended exclusively for its
>>>>>> recipients and may contain confidential information. If you received this
>>>>>> e-mail in error you are hereby notified that any dissemination, copy or
>>>>>> disclosure of this communication is strictly prohibited and may be
>>>>>> unlawful. In this case, please notify us by a reply and delete this email
>>>>>> and its contents immediately.
>>>>>> ----------------------------
>>>>>>
>>>>>>
>>>>>
>>>>
>>>>
>>>> --
>>>> What most experimenters take for granted before they begin their
>>>> experiments is infinitely more interesting than any results to which their
>>>> experiments lead.
>>>> -- Norbert Wiener
>>>>
>>>
>>>
>>
>>
>> --
>> What most experimenters take for granted before they begin their
>> experiments is infinitely more interesting than any results to which their
>> experiments lead.
>> -- Norbert Wiener
>>
>>
>>
>> --
>> Dominic Meiser
>> Tech-X Corporation
>> 5621 Arapahoe Avenue
>> Boulder, CO 80303
>> USA
>> Telephone: 303-996-2036
>> Fax: 303-448-7756www.txcorp.com
>>
>>
>
>
> --
> What most experimenters take for granted before they begin their
> experiments is infinitely more interesting than any results to which their
> experiments lead.
> -- Norbert Wiener
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.mcs.anl.gov/pipermail/petsc-users/attachments/20140829/7a8e3712/attachment-0001.html>
More information about the petsc-users
mailing list