[petsc-dev] HDF5 + p4est regression

Wed Dec 20 07:58:21 CST 2023

Its not done yet.

  Matt

On Wed, Dec 20, 2023 at 8:52 AM Mark Adams <mfadams at lbl.gov> wrote:

> Cool, it's not in main is it?
>
> On Wed, Dec 20, 2023 at 8:51 AM Matthew Knepley <knepley at gmail.com> wrote:
>
>> That is the problem Berend is asking about. Toby and I have to fix it.
>>
>>   Matt
>>
>> On Wed, Dec 20, 2023 at 7:49 AM Mark Adams <mfadams at lbl.gov> wrote:
>>
>>> I seem to have a regression with writing HDF5 meshes with DMForest.
>>>
>>> I going to try bisect but wanted to see if anyone has any ideas,
>>>
>>> Thanks,
>>> Mark
>>>
>>> [0]PETSC ERROR: --------------------- Error Message
>>> --------------------------------------------------------------
>>> [0]PETSC ERROR: Invalid argument
>>> [0]PETSC ERROR: Unknown discretization type for field 0
>>> [0]PETSC ERROR: WARNING! There are unused option(s) set! Could be the
>>> program crashed before usage or a spelling mistake, etc!
>>> [0]PETSC ERROR:   Option left: name:-ex30_vec_view value:
>>> hdf5:sol_e.h5::append source: command line
>>> [0]PETSC ERROR:   Option left: name:-options_left (no value) source:
>>> command line
>>> [0]PETSC ERROR:   Option left: name:-snes_converged_reason (no value)
>>> source: command line
>>> [0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
>>> [0]PETSC ERROR: Petsc Development GIT revision: v3.20.2-363-g9617a9bff32
>>>  GIT Date: 2023-12-19 16:12:36 +0000
>>> [0]PETSC ERROR: ./ex30 on a arch-macosx-gnu-O named MarksMac-302.local
>>> by markadams Wed Dec 20 07:39:06 2023
>>> [0]PETSC ERROR: Configure options CFLAGS="-g
>>> -Wno-deprecated-declarations " CXXFLAGS="-g -Wno-deprecated-declarations "
>>> COPTFLAGS=-O CXXOPTFLAGS=-O --with-cc=/usr/local/opt/llvm/bin/clang
>>> --with-cxx=/usr/local/opt/llvm/bin/clang++ --download-mpich
>>> --with-64-bit-indices=1 --download-parmetis=1 --download-metis=1
>>> --download-zoltan=1 --download-hypre=1 --download-triangle=1
>>> --download-kokkos=1 --download-kokkos-kernels=1 --download-p4est=1
>>> --with-zlib-dir=/usr/local/opt/zlib --with-debugging=0 --download-hdf5=1
>>> PETSC_DIR=/Users/markadams/Codes/petsc2 PETSC_ARCH=arch-macosx-gnu-O
>>> [0]PETSC ERROR: #1 DMCreateLocalSection_Plex() at
>>> /Users/markadams/Codes/petsc2/src/dm/impls/plex/plexsection.c:476
>>> [0]PETSC ERROR: #2 DMGetLocalSection() at
>>> /Users/markadams/Codes/petsc2/src/dm/interface/dm.c:4293
>>> [0]PETSC ERROR: #3 DMCreateDefaultConstraints_Plex() at
>>> /Users/markadams/Codes/petsc2/src/dm/impls/plex/plex.c:10263
>>> [0]PETSC ERROR: #4 DMGetDefaultConstraints() at
>>> /Users/markadams/Codes/petsc2/src/dm/interface/dm.c:4389
>>> [0]PETSC ERROR: #5 DMPlexComputeAnchorMatrix_Tree_FromReference() at
>>> /Users/markadams/Codes/petsc2/src/dm/impls/plex/plextree.c:1561
>>> [0]PETSC ERROR: #6 DMCreateDefaultConstraints_Plex() at
>>> /Users/markadams/Codes/petsc2/src/dm/impls/plex/plex.c:10267
>>> [0]PETSC ERROR: #7 DMGetDefaultConstraints() at
>>> /Users/markadams/Codes/petsc2/src/dm/interface/dm.c:4389
>>> [0]PETSC ERROR: #8 DMLocalToGlobalHook_Constraints() at
>>> /Users/markadams/Codes/petsc2/src/dm/interface/dm.c:2941
>>> [0]PETSC ERROR: #9 DMLocalToGlobalBegin() at
>>> /Users/markadams/Codes/petsc2/src/dm/interface/dm.c:3042
>>> [0]PETSC ERROR: #10 DMGetCoordinates() at
>>> /Users/markadams/Codes/petsc2/src/dm/interface/dmcoordinates.c:429
>>> [0]PETSC ERROR: #11 DMPlexCoordinatesView_HDF5_Legacy_Private() at
>>> /Users/markadams/Codes/petsc2/src/dm/impls/plex/plexhdf5.c:1007
>>> [0]PETSC ERROR: #12 DMPlexCoordinatesView_HDF5_Internal() at
>>> /Users/markadams/Codes/petsc2/src/dm/impls/plex/plexhdf5.c:1044
>>> [0]PETSC ERROR: #13 DMPlexView_HDF5_Internal() at
>>> /Users/markadams/Codes/petsc2/src/dm/impls/plex/plexhdf5.c:1300
>>> [0]PETSC ERROR: #14 DMView_Plex() at
>>> /Users/markadams/Codes/petsc2/src/dm/impls/plex/plex.c:1924
>>> [0]PETSC ERROR: #15 DMView() at
>>> /Users/markadams/Codes/petsc2/src/dm/interface/dm.c:989
>>> [0]PETSC ERROR: #16 PetscObjectView() at
>>> /Users/markadams/Codes/petsc2/src/sys/objects/destroy.c:78
>>> [0]PETSC ERROR: #17 PetscObjectViewFromOptions() at
>>> /Users/markadams/Codes/petsc2/src/sys/objects/destroy.c:130
>>> [0]PETSC ERROR: #18 DMViewFromOptions() at
>>> /Users/markadams/Codes/petsc2/src/dm/interface/dm.c:933
>>> [0]PETSC ERROR: #19 go() at ex30.c:238
>>> [0]PETSC ERROR: #20 main() at ex30.c:494
>>> [0]PETSC ERROR: PETSc Option Table entries:
>>>
>>
>>
>> --
>> What most experimenters take for granted before they begin their
>> experiments is infinitely more interesting than any results to which their
>> experiments lead.
>> -- Norbert Wiener
>>
>> https://www.cse.buffalo.edu/~knepley/
>> <http://www.cse.buffalo.edu/~knepley/>
>>
>

-- 
What most experimenters take for granted before they begin their
experiments is infinitely more interesting than any results to which their
experiments lead.
-- Norbert Wiener

https://www.cse.buffalo.edu/~knepley/ <http://www.cse.buffalo.edu/~knepley/>
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