[petsc-dev] HDF5 + p4est regression

Mark Adams mfadams at lbl.gov
Wed Dec 20 06:48:44 CST 2023


I seem to have a regression with writing HDF5 meshes with DMForest.

I going to try bisect but wanted to see if anyone has any ideas,

Thanks,
Mark

[0]PETSC ERROR: --------------------- Error Message
--------------------------------------------------------------
[0]PETSC ERROR: Invalid argument
[0]PETSC ERROR: Unknown discretization type for field 0
[0]PETSC ERROR: WARNING! There are unused option(s) set! Could be the
program crashed before usage or a spelling mistake, etc!
[0]PETSC ERROR:   Option left: name:-ex30_vec_view value:
hdf5:sol_e.h5::append source: command line
[0]PETSC ERROR:   Option left: name:-options_left (no value) source:
command line
[0]PETSC ERROR:   Option left: name:-snes_converged_reason (no value)
source: command line
[0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
[0]PETSC ERROR: Petsc Development GIT revision: v3.20.2-363-g9617a9bff32
 GIT Date: 2023-12-19 16:12:36 +0000
[0]PETSC ERROR: ./ex30 on a arch-macosx-gnu-O named MarksMac-302.local by
markadams Wed Dec 20 07:39:06 2023
[0]PETSC ERROR: Configure options CFLAGS="-g -Wno-deprecated-declarations "
CXXFLAGS="-g -Wno-deprecated-declarations " COPTFLAGS=-O CXXOPTFLAGS=-O
--with-cc=/usr/local/opt/llvm/bin/clang
--with-cxx=/usr/local/opt/llvm/bin/clang++ --download-mpich
--with-64-bit-indices=1 --download-parmetis=1 --download-metis=1
--download-zoltan=1 --download-hypre=1 --download-triangle=1
--download-kokkos=1 --download-kokkos-kernels=1 --download-p4est=1
--with-zlib-dir=/usr/local/opt/zlib --with-debugging=0 --download-hdf5=1
PETSC_DIR=/Users/markadams/Codes/petsc2 PETSC_ARCH=arch-macosx-gnu-O
[0]PETSC ERROR: #1 DMCreateLocalSection_Plex() at
/Users/markadams/Codes/petsc2/src/dm/impls/plex/plexsection.c:476
[0]PETSC ERROR: #2 DMGetLocalSection() at
/Users/markadams/Codes/petsc2/src/dm/interface/dm.c:4293
[0]PETSC ERROR: #3 DMCreateDefaultConstraints_Plex() at
/Users/markadams/Codes/petsc2/src/dm/impls/plex/plex.c:10263
[0]PETSC ERROR: #4 DMGetDefaultConstraints() at
/Users/markadams/Codes/petsc2/src/dm/interface/dm.c:4389
[0]PETSC ERROR: #5 DMPlexComputeAnchorMatrix_Tree_FromReference() at
/Users/markadams/Codes/petsc2/src/dm/impls/plex/plextree.c:1561
[0]PETSC ERROR: #6 DMCreateDefaultConstraints_Plex() at
/Users/markadams/Codes/petsc2/src/dm/impls/plex/plex.c:10267
[0]PETSC ERROR: #7 DMGetDefaultConstraints() at
/Users/markadams/Codes/petsc2/src/dm/interface/dm.c:4389
[0]PETSC ERROR: #8 DMLocalToGlobalHook_Constraints() at
/Users/markadams/Codes/petsc2/src/dm/interface/dm.c:2941
[0]PETSC ERROR: #9 DMLocalToGlobalBegin() at
/Users/markadams/Codes/petsc2/src/dm/interface/dm.c:3042
[0]PETSC ERROR: #10 DMGetCoordinates() at
/Users/markadams/Codes/petsc2/src/dm/interface/dmcoordinates.c:429
[0]PETSC ERROR: #11 DMPlexCoordinatesView_HDF5_Legacy_Private() at
/Users/markadams/Codes/petsc2/src/dm/impls/plex/plexhdf5.c:1007
[0]PETSC ERROR: #12 DMPlexCoordinatesView_HDF5_Internal() at
/Users/markadams/Codes/petsc2/src/dm/impls/plex/plexhdf5.c:1044
[0]PETSC ERROR: #13 DMPlexView_HDF5_Internal() at
/Users/markadams/Codes/petsc2/src/dm/impls/plex/plexhdf5.c:1300
[0]PETSC ERROR: #14 DMView_Plex() at
/Users/markadams/Codes/petsc2/src/dm/impls/plex/plex.c:1924
[0]PETSC ERROR: #15 DMView() at
/Users/markadams/Codes/petsc2/src/dm/interface/dm.c:989
[0]PETSC ERROR: #16 PetscObjectView() at
/Users/markadams/Codes/petsc2/src/sys/objects/destroy.c:78
[0]PETSC ERROR: #17 PetscObjectViewFromOptions() at
/Users/markadams/Codes/petsc2/src/sys/objects/destroy.c:130
[0]PETSC ERROR: #18 DMViewFromOptions() at
/Users/markadams/Codes/petsc2/src/dm/interface/dm.c:933
[0]PETSC ERROR: #19 go() at ex30.c:238
[0]PETSC ERROR: #20 main() at ex30.c:494
[0]PETSC ERROR: PETSc Option Table entries:
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