[petsc-dev] Error with petsc-dev

Tabrez Ali stali at geology.wisc.edu
Tue Nov 10 11:11:52 CST 2015


Hello

I am having some trouble using PetscOptionsGetString in my own code with 
petsc-dev. So I also tried a PETSc example but it fails to compile. Any 
ideas as to what is wrong. There seems to be a change in 
http://www.mcs.anl.gov/petsc/documentation/changes/dev.html

stali at i5:~/petsc-dev/src/sys/examples/tutorials$ make ex10f90
/opt/mpich3/bin/mpif90 -c -Wall -Wno-unused-variable 
-ffree-line-length-0 -Wno-unused-dummy-argument -O2 
-I/home/stali/petsc-dev/include/petsc/finclude 
-I/home/stali/petsc-dev/include 
-I/home/stali/petsc-dev/arch-linux2-c-opt/include 
-I/opt/mpich3/include    -o ex10f90.o ex10f90.F90
/opt/mpich3/bin/mpif90 -Wall -Wno-unused-variable -ffree-line-length-0 
-Wno-unused-dummy-argument -O2 
-I/home/stali/petsc-dev/include/petsc/finclude -o ex10f90 ex10f90.o  
-Wl,-rpath,/home/stali/petsc-dev/arch-linux2-c-opt/lib 
-L/home/stali/petsc-dev/arch-linux2-c-opt/lib  -lpetsc -llapack -lblas 
-Wl,-rpath,/home/stali/petsc-dev/arch-linux2-c-opt/lib -lmetis -lX11 
-lpthread -lm -Wl,-rpath,/opt/mpich3/lib -L/opt/mpich3/lib 
-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.9 
-L/usr/lib/gcc/x86_64-linux-gnu/4.9 -Wl,-rpath,/usr/lib/x86_64-linux-gnu 
-L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu 
-L/lib/x86_64-linux-gnu -lmpifort -lgfortran -lm -lgfortran -lm 
-lquadmath -lm -lmpicxx -lstdc++ -Wl,-rpath,/opt/mpich3/lib 
-L/opt/mpich3/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.9 
-L/usr/lib/gcc/x86_64-linux-gnu/4.9 -Wl,-rpath,/usr/lib/x86_64-linux-gnu 
-L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu 
-L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu 
-L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/opt/mpich3/lib -lmpi 
-lgcc_s -ldl
ex10f90.o: In function `MAIN__':
ex10f90.F90:(.text+0x7e): undefined reference to 
`petscoptionsinsertfileyaml_'
collect2: error: ld returned 1 exit status
makefile:70: recipe for target 'ex10f90' failed
make: [ex10f90] Error 1 (ignored)
/bin/rm -f -f ex10f90.o

Thanks

T



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