[petsc-dev] Errors when testing PETSc build on Windows
Satish Balay
balay at mcs.anl.gov
Wed Jun 17 17:16:35 CDT 2015
Hm - perhaps you have a different 'find' command in your path. What do you have for:
which find
Try:
export PATH=/usr/bin:${PATH}
and rerun configure
We should look at replacing all shell code with python equivalent..
Satish
On Wed, 17 Jun 2015, Hector E Barrios Molano wrote:
> Hi Satish,
>
> Taking out --with-sowing=0 gives me:
>
> $ ./configure --with-cc='win32fe cl' --with-fc='win32fe ifort'
> --prefix=/cygdrive/c/Installed/petsc/ --PETSC_ARCH=windows-intel
> --with-parmetis-include=/cygdrive/c/Installed/parmetis/include
> --with-parmetis-lib=/cygdrive/c/Installed/parmetis/lib/parmetis.lib
> --with-metis-include=/cygdrive/c/Installed/parmetis/include
> --with-metis-lib=/cygdrive/c/Installed/parmetis/lib/metis.lib
> --with-mpi-include=[/cygdrive/c/Installed/msmpi/Include,/cygdrive/c/Installed/msmpi/Include/x64]
> --with-mpi-lib=[/cygdrive/c/Installed/msmpi/Lib/x64/msmpi.lib,/cygdrive/c/Installed/msmpi/Lib/x64/msmpifec.lib]
> --with-blas-lapack-lib=[/cygdrive/c/Installed/mkl/lib/intel64/mkl_intel_lp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_core.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_sequential.lib]
> --with-scalapack-include=/cygdrive/c/Installed/mkl/include
> --with-scalapack-lib=[/cygdrive/c/Installed/mkl/lib/intel64/mkl_scalapack_lp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_blacs_msmpi_lp64.lib]
> ===============================================================================
> Configuring PETSc to compile on your system
> ===============================================================================
> ===============================================================================
>
>
> *****WARNING:
> PETSC_DIR appears to be a Git clone - but git is not found in
> PATH********
>
>
> ===============================================================================
>
> ===============================================================================
> Trying to
> download http://ftp.mcs.anl.gov/pub/petsc/externalpackages/sowing-1.1.17-p1.tar.gz
> for SOWING
> ===============================================================================
>
> ===============================================================================
> Trying to
> download ftp://ftp.mcs.anl.gov/pub/petsc/externalpackages/sowing-1.1.17-p1.tar.gz
> for SOWING
> ===============================================================================
>
>
>
> *******************************************************************************
> UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log
> for details):
> -------------------------------------------------------------------------------
> Error changing permissions for sowing-1.1.17-p1 obtained from
> /cygdrive/c/Installed/petsc-dev/petsc/windows-intel/externalpackages/_d_sowing-1.1.17-p1.tar.gz
> : Could not execute "cd
> /cygdrive/c/Installed/petsc-dev/petsc/windows-intel/externalpackages;
> chmod -R a+r sowing-1.1.17-p1;find sowing-1.1.17-p1 -type d -name "*"
> -exec chmod a+rx {} \;":
> FIND: Parameter format not correct
> Error changing permissions for sowing-1.1.17-p1 obtained from
> /cygdrive/c/Installed/petsc-dev/petsc/windows-intel/externalpackages/_d_sowing-1.1.17-p1.tar.gz
> : Could not execute "cd
> /cygdrive/c/Installed/petsc-dev/petsc/windows-intel/externalpackages;
> chmod -R a+r sowing-1.1.17-p1;find sowing-1.1.17-p1 -type d -name "*"
> -exec chmod a+rx {} \;":
> FIND: Parameter format not correct
> *******************************************************************************
>
> On Wed, Jun 17, 2015 at 3:36 PM, Satish Balay <balay at mcs.anl.gov> wrote:
> >> --with-sowing=0
> >
> > 1. make sure you have cygwin gcc/g++ installed.
> > 2. configure PETSc without the above option [and rebuild the libraries]
> >
> > Satish
> >
> > On Wed, 17 Jun 2015, Hector E Barrios Molano wrote:
> >
> >> Hi Satish,
> >>
> >> Thank you! It solved some errors. However, I'm still having problems
> >> with the Fortran test.
> >>
> >> $ make PETSC_DIR=/cygdrive/c/Installed/petsc-dev/petsc
> >> PETSC_ARCH=windows-intel test
> >> Running test examples to verify correct installation
> >> Using PETSC_DIR=/cygdrive/c/Installed/petsc-dev/petsc and
> >> PETSC_ARCH=windows-intel
> >> C/C++ example src/snes/examples/tutorials/ex19 run successfully with 1
> >> MPI process
> >> C/C++ example src/snes/examples/tutorials/ex19 run successfully with 2
> >> MPI processes
> >> *******************Error detected during compile or link!*******************
> >> See http://www.mcs.anl.gov/petsc/documentation/faq.html
> >> /cygdrive/c/Installed/petsc-dev/petsc/src/snes/examples/tutorials ex5f
> >> *********************************************************
> >> /cygdrive/c/Installed/petsc-dev/petsc/bin/win32fe/win32fe ifort -c
> >> -MT -Z7 -fpp -I/cygdrive/c/Installed/petsc-dev/petsc/include
> >> -I/cygdrive/c/Installed/petsc-dev/petsc/windows-intel/include
> >> -I/cygdrive/c/Installed/parmetis/include
> >> -I/cygdrive/c/Installed/msmpi/Include
> >> -I/cygdrive/c/Installed/msmpi/Include/x64 -o ex5f.o ex5f.F
> >> /cygdrive/c/Installed/petsc-dev/petsc/bin/win32fe/win32fe ifort -MT
> >> -Z7 -fpp -o ex5f ex5f.o
> >> -L/cygdrive/c/Installed/petsc-dev/petsc/windows-intel/lib -lpetsc
> >> /cygdrive/c/Installed/mkl/lib/intel64/mkl_scalapack_lp64.lib
> >> /cygdrive/c/Installed/mkl/lib/intel64/mkl_blacs_msmpi_lp64.lib
> >> /cygdrive/c/Installed/mkl/lib/intel64/mkl_intel_lp64.lib
> >> /cygdrive/c/Installed/mkl/lib/intel64/mkl_core.lib
> >> /cygdrive/c/Installed/mkl/lib/intel64/mkl_sequential.lib
> >> /cygdrive/c/Installed/parmetis/lib/parmetis.lib
> >> /cygdrive/c/Installed/parmetis/lib/metis.lib
> >> /cygdrive/c/Installed/msmpi/Lib/x64/msmpi.lib
> >> /cygdrive/c/Installed/msmpi/Lib/x64/msmpifec.lib Gdi32.lib User32.lib
> >> Advapi32.lib Kernel32.lib Ws2_32.lib
> >> ex5f.obj : error LNK2019: unresolved external symbol SNESCREATE
> >> referenced in function MAIN__
> >> ex5f.obj : error LNK2019: unresolved external symbol
> >> DMCREATEGLOBALVECTOR referenced in function MAIN__
> >> ex5f.obj : error LNK2019: unresolved external symbol VECDUPLICATE
> >> referenced in function MAIN__
> >> ex5f.obj : error LNK2019: unresolved external symbol DMDAGETCORNERS
> >> referenced in function MAIN__
> >> ex5f.obj : error LNK2019: unresolved external symbol
> >> DMDAGETGHOSTCORNERS referenced in function MAIN__
> >> ex5f.obj : error LNK2019: unresolved external symbol SNESSETDM
> >> referenced in function MAIN__
> >> ex5f.obj : error LNK2019: unresolved external symbol
> >> SNESSETFROMOPTIONS referenced in function MAIN__
> >> ex5f.obj : error LNK2019: unresolved external symbol
> >> SNESGETITERATIONNUMBER referenced in function MAIN__
> >> ex5f.obj : error LNK2019: unresolved external symbol VECDESTROY
> >> referenced in function MAIN__
> >> ex5f.obj : error LNK2019: unresolved external symbol SNESDESTROY
> >> referenced in function MAIN__
> >> ex5f.obj : error LNK2019: unresolved external symbol DMDESTROY
> >> referenced in function MAIN__
> >> ex5f.obj : error LNK2019: unresolved external symbol MATSETVALUESLOCAL
> >> referenced in function FORMJACOBIANLOCAL
> >> ex5f.obj : error LNK2019: unresolved external symbol MATASSEMBLYBEGIN
> >> referenced in function FORMJACOBIANLOCAL
> >> ex5f.obj : error LNK2019: unresolved external symbol MATASSEMBLYEND
> >> referenced in function FORMJACOBIANLOCAL
> >> C:\INSTAL~1\PETSC-~1\petsc\src\snes\examples\TUTORI~1\ex5f.exe : fatal
> >> error LNK1120: 14 unresolved externals
> >> makefile:50: recipe for target 'ex5f' failed
> >> make[3]: [ex5f] Error 96 (ignored)
> >> /usr/bin/rm -f ex5f.o
> >> Completed test examples
> >> =========================================
> >> Now to evaluate the computer systems you plan use - do:
> >> make PETSC_DIR=/cygdrive/c/Installed/petsc-dev/petsc
> >> PETSC_ARCH=windows-intel streams NPMAX=<number of MPI processes you
> >> intend to use>
> >>
> >> On Wed, Jun 17, 2015 at 3:01 PM, Satish Balay <balay at mcs.anl.gov> wrote:
> >> > /cygdrive/c/Installed/mkl/lib/intel64/mkl_intel_ilp64.lib
> >> >
> >> > This is the wrong version of MKL. You should look for lp64 variant [not ilp64]
> >> >
> >> > [you can just edit PETSC_DIR/PETSC_ARCH/lib/petsc/conf/petscvariables and make this
> >> > change manually - and retry compiling the example]
> >> >
> >> > Satish
> >> >
> >> > On Wed, 17 Jun 2015, Hector E Barrios Molano wrote:
> >> >
> >> >> Hi PETSc Experts!
> >> >>
> >> >> I'm trying to build PETSc on a Windows machine, I got errors during
> >> >> the test part. I downloaded petsc-dev from git.
> >> >>
> >> >>
> >> >> This are my configuration command:
> >> >>
> >> >> $ ./configure --with-cc='win32fe cl' --with-fc='win32fe ifort'
> >> >> --prefix=/cygdrive/c/Installed/petsc/ --PETSC_ARCH=windows-intel
> >> >> --with-parmetis-include=/cygdrive/c/Installed/parmetis/include
> >> >> --with-parmetis-lib=/cygdrive/c/Installed/parmetis/lib/parmetis.lib
> >> >> --with-metis-include=/cygdrive/c/Installed/parmetis/include
> >> >> --with-metis-lib=/cygdrive/c/Installed/parmetis/lib/metis.lib
> >> >> --with-mpi-include=[/cygdrive/c/Installed/msmpi/Include,/cygdrive/c/Installed/msmpi/Include/x64]
> >> >> --with-mpi-lib=[/cygdrive/c/Installed/msmpi/Lib/x64/msmpi.lib,/cygdrive/c/Installed/msmpi/Lib/x64/msmpifec.lib]
> >> >> --with-blas-lapack-lib=[/cygdrive/c/Installed/mkl/lib/intel64/mkl_intel_ilp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_core.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_sequential.lib]
> >> >> --with-scalapack-include=/cygdrive/c/Installed/mkl/include
> >> >> --with-scalapack-lib=[/cygdrive/c/Installed/mkl/lib/intel64/mkl_scalapack_ilp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_blacs_msmpi_ilp64.lib]
> >> >> --with-sowing=0
> >> >>
> >> >>
> >> >> I was able con configure and compile:
> >> >>
> >> >> make PETSC_DIR=/cygdrive/c/Installed/petsc-dev/petsc
> >> >> PETSC_ARCH=windows-intel all
> >> >>
> >> >> However, when testing I got these errors:
> >> >>
> >> >> $ make PETSC_DIR=/cygdrive/c/Installed/petsc-dev/petsc
> >> >> PETSC_ARCH=windows-intel test
> >> >> Running test examples to verify correct installation
> >> >> Using PETSC_DIR=/cygdrive/c/Installed/petsc-dev/petsc and
> >> >> PETSC_ARCH=windows-intel
> >> >> Possible error running C/C++ src/snes/examples/tutorials/ex19 with 1 MPI process
> >> >> See http://www.mcs.anl.gov/petsc/documentation/faq.html
> >> >> lid velocity = 0.0016, prandtl # = 1, grashof # = 1
> >> >> [0]PETSC ERROR:
> >> >> ------------------------------------------------------------------------
> >> >> [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
> >> >> probably memory access out of range
> >> >> [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
> >> >> [0]PETSC ERROR: or see
> >> >> http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind
> >> >> [0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac
> >> >> OS X to find memory corruption errors
> >> >> [0]PETSC ERROR: likely location of problem given in stack below
> >> >> [0]PETSC ERROR: --------------------- Stack Frames
> >> >> ------------------------------------
> >> >> [0]PETSC ERROR: Note: The EXACT line numbers in the stack are not available,
> >> >> [0]PETSC ERROR: INSTEAD the line number of the start of the function
> >> >> [0]PETSC ERROR: is given.
> >> >> [0]PETSC ERROR: [0] VecNorm_Seq line 240
> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\vec\vec\impls\seq\bvec2.c
> >> >> [0]PETSC ERROR: [0] VecNorm line 228
> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\vec\vec\INTERF~1\rvector.c
> >> >> [0]PETSC ERROR: [0] SNESSolve_NEWTONLS line 150
> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\snes\impls\ls\ls.c
> >> >> [0]PETSC ERROR: [0] SNESSolve line 3847
> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\snes\INTERF~1\snes.c
> >> >> [0]PETSC ERROR: [0] main line 108
> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\snes\examples\TUTORI~1\ex19.c
> >> >> [0]PETSC ERROR: --------------------- Error Message
> >> >> --------------------------------------------------------------
> >> >> [0]PETSC ERROR: Signal received
> >> >> [0]PETSC ERROR: See
> >> >> http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble
> >> >> shooting.
> >> >> [0]PETSC ERROR: Petsc Development GIT revision: unknown GIT Date: unknown
> >> >> [0]PETSC ERROR: ./ex19 on a windows-intel named HECTOR-PC by hector
> >> >> Wed Jun 17 14:21:38 2015
> >> >> [0]PETSC ERROR: Configure options --with-cc="win32fe cl"
> >> >> --with-fc="win32fe ifort" --prefix=/cygdrive/c/Installed/petsc/
> >> >> --PETSC_ARCH=windows-intel
> >> >> --with-parmetis-include=/cygdrive/c/Installed/parmetis/include
> >> >> --with-parmetis-lib=/cygdrive/c/Installed/parmetis/lib/parmetis.lib
> >> >> --with-metis-include=/cygdrive/c/Installed/parmetis/include
> >> >> --with-metis-lib=/cygdrive/c/Installed/parmetis/lib/metis.lib
> >> >> --with-mpi-include="[/cygdrive/c/Installed/msmpi/Include,/cygdrive/c/Installed/msmpi/Include/x64]"
> >> >> --with-mpi-lib="[/cygdrive/c/Installed/msmpi/Lib/x64/msmpi.lib,/cygdrive/c/Installed/msmpi/Lib/x64/msmpifec.lib]"
> >> >> --with-blas-lapack-lib="[/cygdrive/c/Installed/mkl/lib/intel64/mkl_intel_ilp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_core.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_sequential.lib]"
> >> >> --with-scalapack-include=/cygdrive/c/Installed/mkl/include
> >> >> --with-scalapack-lib="[/cygdrive/c/Installed/mkl/lib/intel64/mkl_scalapack_ilp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_blacs_msmpi_ilp64.lib]"
> >> >> --with-sowing=0
> >> >> [0]PETSC ERROR: #1 User provided function() line 0 in unknown file
> >> >>
> >> >> job aborted:
> >> >> [ranks] message
> >> >>
> >> >> [0] application aborted
> >> >> aborting MPI_COMM_WORLD (comm=0x44000000), error 59, comm rank 0
> >> >>
> >> >> ---- error analysis -----
> >> >>
> >> >> [0] on hector-PC
> >> >> ./ex19 aborted the job. abort code 59
> >> >>
> >> >> ---- error analysis -----
> >> >> Possible error running C/C++ src/snes/examples/tutorials/ex19 with 2
> >> >> MPI processes
> >> >> See http://www.mcs.anl.gov/petsc/documentation/faq.html
> >> >> lid velocity = 0.0016, prandtl # = 1, grashof # = 1
> >> >> [0]PETSC ERROR:
> >> >> [1]PETSC ERROR:
> >> >> ------------------------------------------------------------------------
> >> >> ------------------------------------------------------------------------
> >> >> [0]PETSC ERROR:
> >> >> [1]PETSC ERROR:
> >> >> Caught signal number 11 SEGV: Segmentation Violation, probably memory
> >> >> access out of range
> >> >> Caught signal number 11 SEGV: Segmentation Violation, probably memory
> >> >> access out of range
> >> >> [0]PETSC ERROR:
> >> >> [1]PETSC ERROR:
> >> >> Try option -start_in_debugger or -on_error_attach_debugger
> >> >> Try option -start_in_debugger or -on_error_attach_debugger
> >> >> [0]PETSC ERROR:
> >> >> [1]PETSC ERROR:
> >> >> or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind
> >> >> or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind
> >> >> [0]PETSC ERROR:
> >> >> [1]PETSC ERROR:
> >> >> or try http://valgrind.org on GNU/linux and Apple Mac OS X to find
> >> >> memory corruption errors
> >> >> or try http://valgrind.org on GNU/linux and Apple Mac OS X to find
> >> >> memory corruption errors
> >> >> [0]PETSC ERROR:
> >> >> [1]PETSC ERROR:
> >> >> likely location of problem given in stack below
> >> >> likely location of problem given in stack below
> >> >> [0]PETSC ERROR:
> >> >> [1]PETSC ERROR:
> >> >> --------------------- Stack Frames ------------------------------------
> >> >> --------------------- Stack Frames ------------------------------------
> >> >> [0]PETSC ERROR:
> >> >> [1]PETSC ERROR:
> >> >> Note: The EXACT line numbers in the stack are not available,
> >> >> Note: The EXACT line numbers in the stack are not available,
> >> >> [0]PETSC ERROR:
> >> >> [1]PETSC ERROR:
> >> >> INSTEAD the line number of the start of the function
> >> >> INSTEAD the line number of the start of the function
> >> >> [0]PETSC ERROR:
> >> >> [1]PETSC ERROR:
> >> >> is given.
> >> >> is given.
> >> >> [0]PETSC ERROR:
> >> >> [1]PETSC ERROR:
> >> >> [0] VecNorm_MPI line 57 C:\INSTAL~1\PETSC-~1\petsc\src\vec\vec\impls\mpi\pvec2.c
> >> >> [1] VecNorm_MPI line 57 C:\INSTAL~1\PETSC-~1\petsc\src\vec\vec\impls\mpi\pvec2.c
> >> >> [0]PETSC ERROR:
> >> >> [1]PETSC ERROR:
> >> >> [0] VecNorm line 228 C:\INSTAL~1\PETSC-~1\petsc\src\vec\vec\INTERF~1\rvector.c
> >> >> [1] VecNorm line 228 C:\INSTAL~1\PETSC-~1\petsc\src\vec\vec\INTERF~1\rvector.c
> >> >> [0]PETSC ERROR:
> >> >> [1]PETSC ERROR:
> >> >> [0] SNESSolve_NEWTONLS line 150
> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\snes\impls\ls\ls.c
> >> >> [1] SNESSolve_NEWTONLS line 150
> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\snes\impls\ls\ls.c
> >> >> [0]PETSC ERROR:
> >> >> [1]PETSC ERROR:
> >> >> [0] SNESSolve line 3847 C:\INSTAL~1\PETSC-~1\petsc\src\snes\INTERF~1\snes.c
> >> >> [1] SNESSolve line 3847 C:\INSTAL~1\PETSC-~1\petsc\src\snes\INTERF~1\snes.c
> >> >> [0]PETSC ERROR:
> >> >> [1]PETSC ERROR:
> >> >> [0] main line 108 C:\INSTAL~1\PETSC-~1\petsc\src\snes\examples\TUTORI~1\ex19.c
> >> >> [1] main line 108 C:\INSTAL~1\PETSC-~1\petsc\src\snes\examples\TUTORI~1\ex19.c
> >> >> [0]PETSC ERROR:
> >> >> [1]PETSC ERROR:
> >> >> --------------------- Error Message
> >> >> --------------------------------------------------------------
> >> >> --------------------- Error Message
> >> >> --------------------------------------------------------------
> >> >> [0]PETSC ERROR:
> >> >> [1]PETSC ERROR:
> >> >> Signal received
> >> >> Signal received
> >> >> [0]PETSC ERROR:
> >> >> [1]PETSC ERROR:
> >> >> See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting.
> >> >> See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting.
> >> >> [0]PETSC ERROR:
> >> >> [1]PETSC ERROR:
> >> >> Petsc Development GIT revision: unknown GIT Date: unknown
> >> >> Petsc Development GIT revision: unknown GIT Date: unknown
> >> >> [0]PETSC ERROR:
> >> >> [1]PETSC ERROR:
> >> >> ./ex19 on a windows-intel named HECTOR-PC by hector Wed Jun 17 14:21:38 2015
> >> >> ./ex19 on a windows-intel named HECTOR-PC by hector Wed Jun 17 14:21:38 2015
> >> >> [0]PETSC ERROR:
> >> >> [1]PETSC ERROR:
> >> >> Configure options --with-cc="win32fe cl" --with-fc="win32fe ifort"
> >> >> --prefix=/cygdrive/c/Installed/petsc/ --PETSC_ARCH=windows-intel
> >> >> --with-parmetis-include=/cygdrive/c/Installed/parmetis/include
> >> >> --with-parmetis-lib=/cygdrive/c/Installed/parmetis/lib/parmetis.lib
> >> >> --with-metis-include=/cygdrive/c/Installed/parmetis/include
> >> >> --with-metis-lib=/cygdrive/c/Installed/parmetis/lib/metis.lib
> >> >> --with-mpi-include="[/cygdrive/c/Installed/msmpi/Include,/cygdrive/c/Installed/msmpi/Include/x64]"
> >> >> --with-mpi-lib="[/cygdrive/c/Installed/msmpi/Lib/x64/msmpi.lib,/cygdrive/c/Installed/msmpi/Lib/x64/msmpifec.lib]"
> >> >> --with-blas-lapack-lib="[/cygdrive/c/Installed/mkl/lib/intel64/mkl_intel_ilp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_core.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_sequential.lib]"
> >> >> --with-scalapack-include=/cygdrive/c/Installed/mkl/include
> >> >> --with-scalapack-lib="[/cygdrive/c/Installed/mkl/lib/intel64/mkl_scalapack_ilp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_blacs_msmpi_ilp64.lib]"
> >> >> --with-sowing=0
> >> >> Configure options --with-cc="win32fe cl" --with-fc="win32fe ifort"
> >> >> --prefix=/cygdrive/c/Installed/petsc/ --PETSC_ARCH=windows-intel
> >> >> --with-parmetis-include=/cygdrive/c/Installed/parmetis/include
> >> >> --with-parmetis-lib=/cygdrive/c/Installed/parmetis/lib/parmetis.lib
> >> >> --with-metis-include=/cygdrive/c/Installed/parmetis/include
> >> >> --with-metis-lib=/cygdrive/c/Installed/parmetis/lib/metis.lib
> >> >> --with-mpi-include="[/cygdrive/c/Installed/msmpi/Include,/cygdrive/c/Installed/msmpi/Include/x64]"
> >> >> --with-mpi-lib="[/cygdrive/c/Installed/msmpi/Lib/x64/msmpi.lib,/cygdrive/c/Installed/msmpi/Lib/x64/msmpifec.lib]"
> >> >> --with-blas-lapack-lib="[/cygdrive/c/Installed/mkl/lib/intel64/mkl_intel_ilp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_core.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_sequential.lib]"
> >> >> --with-scalapack-include=/cygdrive/c/Installed/mkl/include
> >> >> --with-scalapack-lib="[/cygdrive/c/Installed/mkl/lib/intel64/mkl_scalapack_ilp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_blacs_msmpi_ilp64.lib]"
> >> >> --with-sowing=0
> >> >> [0]PETSC ERROR:
> >> >> [1]PETSC ERROR:
> >> >> #1 User provided function() line 0 in unknown file
> >> >> #1 User provided function() line 0 in unknown file
> >> >>
> >> >> job aborted:
> >> >> [ranks] message
> >> >>
> >> >> [0] application aborted
> >> >> aborting MPI_COMM_WORLD (comm=0x44000000), error 59, comm rank 0
> >> >>
> >> >> [1] application aborted
> >> >> aborting MPI_COMM_WORLD (comm=0x44000000), error 59, comm rank 1
> >> >>
> >> >> ---- error analysis -----
> >> >>
> >> >> [0-1] on hector-PC
> >> >> ./ex19 aborted the job. abort code 59
> >> >>
> >> >> ---- error analysis -----
> >> >> *******************Error detected during compile or link!*******************
> >> >> See http://www.mcs.anl.gov/petsc/documentation/faq.html
> >> >> /cygdrive/c/Installed/petsc-dev/petsc/src/snes/examples/tutorials ex5f
> >> >> *********************************************************
> >> >> /cygdrive/c/Installed/petsc-dev/petsc/bin/win32fe/win32fe ifort -c
> >> >> -MT -Z7 -fpp -I/cygdrive/c/Installed/petsc-dev/petsc/include
> >> >> -I/cygdrive/c/Installed/petsc-dev/petsc/windows-intel/include
> >> >> -I/cygdrive/c/Installed/parmetis/include
> >> >> -I/cygdrive/c/Installed/msmpi/Include
> >> >> -I/cygdrive/c/Installed/msmpi/Include/x64 -o ex5f.o ex5f.F
> >> >> /cygdrive/c/Installed/petsc-dev/petsc/bin/win32fe/win32fe ifort -MT
> >> >> -Z7 -fpp -o ex5f ex5f.o
> >> >> -L/cygdrive/c/Installed/petsc-dev/petsc/windows-intel/lib -lpetsc
> >> >> /cygdrive/c/Installed/mkl/lib/intel64/mkl_scalapack_ilp64.lib
> >> >> /cygdrive/c/Installed/mkl/lib/intel64/mkl_blacs_msmpi_ilp64.lib
> >> >> /cygdrive/c/Installed/mkl/lib/intel64/mkl_intel_ilp64.lib
> >> >> /cygdrive/c/Installed/mkl/lib/intel64/mkl_core.lib
> >> >> /cygdrive/c/Installed/mkl/lib/intel64/mkl_sequential.lib
> >> >> /cygdrive/c/Installed/parmetis/lib/parmetis.lib
> >> >> /cygdrive/c/Installed/parmetis/lib/metis.lib
> >> >> /cygdrive/c/Installed/msmpi/Lib/x64/msmpi.lib
> >> >> /cygdrive/c/Installed/msmpi/Lib/x64/msmpifec.lib Gdi32.lib User32.lib
> >> >> Advapi32.lib Kernel32.lib Ws2_32.lib
> >> >> ex5f.obj : error LNK2019: unresolved external symbol SNESCREATE
> >> >> referenced in function MAIN__
> >> >> ex5f.obj : error LNK2019: unresolved external symbol
> >> >> DMCREATEGLOBALVECTOR referenced in function MAIN__
> >> >> ex5f.obj : error LNK2019: unresolved external symbol VECDUPLICATE
> >> >> referenced in function MAIN__
> >> >> ex5f.obj : error LNK2019: unresolved external symbol DMDAGETCORNERS
> >> >> referenced in function MAIN__
> >> >> ex5f.obj : error LNK2019: unresolved external symbol
> >> >> DMDAGETGHOSTCORNERS referenced in function MAIN__
> >> >> ex5f.obj : error LNK2019: unresolved external symbol SNESSETDM
> >> >> referenced in function MAIN__
> >> >> ex5f.obj : error LNK2019: unresolved external symbol
> >> >> SNESSETFROMOPTIONS referenced in function MAIN__
> >> >> ex5f.obj : error LNK2019: unresolved external symbol
> >> >> SNESGETITERATIONNUMBER referenced in function MAIN__
> >> >> ex5f.obj : error LNK2019: unresolved external symbol VECDESTROY
> >> >> referenced in function MAIN__
> >> >> ex5f.obj : error LNK2019: unresolved external symbol SNESDESTROY
> >> >> referenced in function MAIN__
> >> >> ex5f.obj : error LNK2019: unresolved external symbol DMDESTROY
> >> >> referenced in function MAIN__
> >> >> ex5f.obj : error LNK2019: unresolved external symbol MATSETVALUESLOCAL
> >> >> referenced in function FORMJACOBIANLOCAL
> >> >> ex5f.obj : error LNK2019: unresolved external symbol MATASSEMBLYBEGIN
> >> >> referenced in function FORMJACOBIANLOCAL
> >> >> ex5f.obj : error LNK2019: unresolved external symbol MATASSEMBLYEND
> >> >> referenced in function FORMJACOBIANLOCAL
> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\snes\examples\TUTORI~1\ex5f.exe : fatal
> >> >> error LNK1120: 14 unresolved externals
> >> >> makefile:50: recipe for target 'ex5f' failed
> >> >> make[3]: [ex5f] Error 96 (ignored)
> >> >> /usr/bin/rm -f ex5f.o
> >> >> Completed test examples
> >> >> =========================================
> >> >> Now to evaluate the computer systems you plan use - do:
> >> >> make PETSC_DIR=/cygdrive/c/Installed/petsc-dev/petsc
> >> >> PETSC_ARCH=windows-intel streams NPMAX=<number of MPI processes you
> >> >> intend to use>
> >> >>
> >> >>
> >> >> Best Regards,
> >> >>
> >> >> Hector
> >> >>
> >> >
> >>
> >
>
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