[petsc-dev] PetscFinalize broken with -options_table ?
William Perkins
william.perkins at pnnl.gov
Tue Mar 18 18:20:33 CDT 2014
All,
I also ran into this today.
Attached is a minimal program that exhibited the problem for me.
Initially, I thought it was because I was using non-default formats
(e.g. MATLAB) for VecView and MatView, but I think any Viewer use causes
the problem.
Thanks.
Bill
P.S. I'm using 3.4.3 configured as follows:
python ./config/configure.py \
PETSC_ARCH=arch-macosx-complex-opt \
--with-prefix="$prefix" \
--with-mpi=1 \
--with-cc=mpicc \
--with-fc=mpif90 \
--with-cxx=mpicxx \
--with-c++-support=1 \
--with-c-support=0 \
--with-fortran=0 \
--with-scalar-type=complex \
--with-fortran-kernels=generic \
--with-valgrind=0 \
--download-superlu_dist \
--download-parmetis \
--download-metis \
--download-f2cblaslapack=1 \
--with-clanguage=c++ \
--with-shared-libraries=0 \
--with-dynamic-loading=0 \
--with-x=0 \
--with-mpirun=mpiexec \
--with-mpiexec=mpiexec \
--with-debugging=0
On 03/12/2014 04:30 AM, Matthew Knepley wrote:
> On Wed, Mar 12, 2014 at 4:52 AM, Václav Hapla <vaclav.hapla at vsb.cz
> <mailto:vaclav.hapla at vsb.cz>> wrote:
>
> You're right this is not happening with the petsc example. Thus it's
> probably problem in my code. I'll come back when I know what's the
> true reason.
>
>
> It could still be our bug. If you can strip down your code and send it,
> I will look at it.
>
> Thanks,
>
> Matt
>
> Matt, sorry for replying to your personal address only.
>
> Thank you,
> Vaclav
>
>
> Dne 11.3.2014 16:04, Matthew Knepley napsal(a):
>> On Tue, Mar 11, 2014 at 9:27 AM, Václav Hapla <vaclav.hapla at vsb.cz
>> <mailto:vaclav.hapla at vsb.cz>> wrote:
>>
>> FWICS PetscFinalize in petsc-current contains the following bug.
>> It calls
>> PetscObjectRegisterDestroyAll()
>> and after that, if -options_table is present, it calls
>> PetscViewerASCIIGetStdout(PETSC_COMM_WORLD,&viewer);
>> PetscOptionsView(viewer);
>> causing
>> [0]PETSC ERROR: No support for this operation for this
>> object type!
>> [0]PETSC ERROR: Only supports ASCII viewer!
>> because the viewer is destroyed already by
>> PetscObjectRegisterDestroyAll.
>>
>> I haven't tested petsc-dev but I can see in it's the same
>> situation in the pinit.c source.
>>
>>
>> I cannot reproduce this on 'next':
>>
>> next $:/PETSc3/petsc/petsc-dev/src/snes/examples/tutorials$ ./ex19
>> -options_table -snes_monitor
>> PETSC_OPTIONS="-cublas 0" ./ex19 -options_table -snes_monitor
>> lid velocity = 0.0625, prandtl # = 1, grashof # = 1
>> 0 SNES Function norm 2.391552133017e-01
>> 1 SNES Function norm 6.839858507066e-05
>> 2 SNES Function norm 8.558777232425e-11
>> Number of SNES iterations = 2
>> #PETSc Option Table entries:
>> -options_table
>> -snes_monitor
>> #End of PETSc Option Table entries
>>
>> Can you reproduce this with a PETSc example?
>>
>> Thanks,
>>
>> Matt
>>
>> Best regards,
>> Vaclav
>>
>>
>> --
>>
>> Vaclav Hapla
>> Junior researcher / PhD student
>> IT4Innovations <http://www.it4i.eu/> / Dept. of Applied
>> Mathematics <http://am.vsb.cz/>
>>
>> _office PI 328_
>> tel.: (+420) 597 329 078 <tel:%28%2B420%29%20597%20329%20078>
>> Podnikatelsky inkubator VSB-TUO
>> Studentska 6202/17
>> 708 00 Ostrava-Poruba
>> Czech Republic
>>
>> _contact address_
>> IT4Innovations
>> VSB - Technical University of Ostrava
>> 17. listopadu 15/2172
>> 708 33 Ostrava-Poruba
>> Czech Republic
>>
>>
>>
>>
>> --
>> What most experimenters take for granted before they begin their
>> experiments is infinitely more interesting than any results to
>> which their experiments lead.
>> -- Norbert Wiener
>
> --
>
> Vaclav Hapla
> Junior researcher / PhD student
> IT4Innovations <http://www.it4i.eu/> / Dept. of Applied Mathematics
> <http://am.vsb.cz/>
>
> _office PI 328_
> tel.: (+420) 597 329 078 <tel:%28%2B420%29%20597%20329%20078>
> Podnikatelsky inkubator VSB-TUO
> Studentska 6202/17
> 708 00 Ostrava-Poruba
> Czech Republic
>
> _contact address_
> IT4Innovations
> VSB - Technical University of Ostrava
> 17. listopadu 15/2172
> 708 33 Ostrava-Poruba
> Czech Republic
>
>
>
>
> --
> What most experimenters take for granted before they begin their
> experiments is infinitely more interesting than any results to which
> their experiments lead.
> -- Norbert Wiener
--
Bill Perkins
Research Engineer
Hydrology Group
Pacific Northwest National Laboratory
902 Battelle Boulevard
P.O. Box 999, MSIN K9-36
Richland, WA 99352 USA
Tel: 509-372-6131
Fax: 509-372-6089
william.perkins at pnnl.gov
www.pnnl.gov
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Script started on Tue Mar 18 16:15:45 2014
d3g096 at pe10900> mpiexec -np 2 viewer
d3g096 at pe10900> mpiexec -np 2 viewer -options_table
#PETSc Option Table entries:
-options_table
#End of PETSc Option Table entries
d3g096 at pe10900> mpiexec -np 2 viewer -options_table -breakme
Vector Object: 2 MPI processes
type: mpi
Process [0]
1
1
1
1
1
Process [1]
1
1
1
1
1
[1]PETSC ERROR: --------------------- Error Message ------------------------------------
[1]PETSC ERROR: No support for this operation for this object type!
[1]PETSC ERROR: Only supports ASCII viewer!
[1]PETSC ERROR: ------------------------------------------------------------------------
[1]PETSC ERROR: Petsc Release Version 3.4.3, Oct, 15, 2013
[1]PETSC ERROR: See docs/changes/index.html for recent updates.
[1]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[1]PETSC ERROR: See docs/index.html for manual pages.
[1]PETSC ERROR: ------------------------------------------------------------------------
[1]PETSC ERROR: viewer on a arch-macosx-complex-opt named pe10900 by d3g096 Tue Mar 18 16:16:25 2014
[1]PETSC ERROR: Libraries linked from /net/flophouse/files0/perksoft/petsc-3.4.3/arch-macosx-complex-opt/lib
[1]PETSC ERROR: Configure run at Tue Jan 28 12:41:14 2014
[1]PETSC ERROR: Configure options PETSC_ARCH=arch-macosx-complex-opt --with-prefix=/net/flophouse/files0/perksoft/macosx --with-mpi=1 --with-cc=mpicc --with-fc=mpif90 --with-cxx=mpicxx --with-c++-support=1 --with-c-support=0 --with-fortran=0 --with-scalar-type=complex --with-fortran-kernels=generic --with-valgrind=0 --download-superlu_dist --download-parmetis --download-metis --download-f2cblaslapack=1 --with-clanguage=c++ --with-shared-libraries=0 --with-dynamic-loading=0 --with-x=0 --with-mpirun=mpiexec --with-mpiexec=mpiexec --with-debugging=0
[1]PETSC ERROR: ------------------------------------------------------------------------
[1]PETSC ERROR: PetscOptionsView() line 692 in /net/flophouse/files0/perksoft/petsc-3.4.3/src/sys/objects/options.c
[1]PETSC ERROR: PetscFinalize() line 1036 in /net/flophouse/files0/perksoft/petsc-3.4.3/src/sys/objects/pinit.c
[1]PETSC ERROR: main() line 44 in /home/d3g096/Projects/PerformanceLDRD/src/sandbox/petsc/viewer.cpp
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: No support for this operation for this object type!
[0]PETSC ERROR: Only supports ASCII viewer!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.4.3, Oct, 15, 2013
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: viewer on a arch-macosx-complex-opt named pe10900 by d3g096 Tue Mar 18 16:16:25 2014
[0]PETSC ERROR: Libraries linked from /net/flophouse/files0/perksoft/petsc-3.4.3/arch-macosx-complex-opt/lib
[0]PETSC ERROR: Configure run at Tue Jan 28 12:41:14 2014
[0]PETSC ERROR: Configure options PETSC_ARCH=arch-macosx-complex-opt --with-prefix=/net/flophouse/files0/perksoft/macosx --with-mpi=1 --with-cc=mpicc --with-fc=mpif90 --with-cxx=mpicxx --with-c++-support=1 --with-c-support=0 --with-fortran=0 --with-scalar-type=complex --with-fortran-kernels=generic --with-valgrind=0 --download-superlu_dist --download-parmetis --download-metis --download-f2cblaslapack=1 --with-clanguage=c++ --with-shared-libraries=0 --with-dynamic-loading=0 --with-x=0 --with-mpirun=mpiexec --with-mpiexec=mpiexec --with-debugging=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: PetscOptionsView() line 692 in /net/flophouse/files0/perksoft/petsc-3.4.3/src/sys/objects/options.c
[0]PETSC ERROR: PetscFinalize() line 1036 in /net/flophouse/files0/perksoft/petsc-3.4.3/src/sys/objects/pinit.c
[0]PETSC ERROR: main() line 44 in /home/d3g096/Projects/PerformanceLDRD/src/sandbox/petsc/viewer.cpp
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 1 in communicator MPI_COMM_WORLD
with errorcode 56.
NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------
d3g096 at pe10900> exit
exit
Script done on Tue Mar 18 16:16:29 2014
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