[petsc-dev] error with build

[Barry Smith]

On Nov 15, 2010, at 3:15 PM, Satish Balay wrote:

> Note: you might need latest cython installed on your machine - and do:
> 'make cython' in petsc4py-dev [before its useable by petsc configure]

   Crap that make cython business should be done automatically now! If it is not that is bad! petsc4py-dev should locate cython and use it if it finds it.


   Barry


> 
> Satish
> 
> On Mon, 15 Nov 2010, Barry Smith wrote:
> 
>> 
>>   There (sadly) is not completely automatic way to do this. Cd to $PETSC_DIR/externalpackages; remove any petsc4py* directories from there; clone petsc4py-dev into that directory. cd back to $PETSC_DIR; now run ./configure --download-petsc4py
>> 
>>   It will not go and get a copy of petsc4py since the petsc4py-dev directory exists, rather it will use the one you have put there (by your clone).
>> 
>>   Note that petsc4py-dev may not always have been updated to the latest changes to petsc-dev, if you get errors in the build report them to petsc-maint at mcs.anl.gov and we'll update the petsc4py-dev; note that after an update of petsc4py-dev you should cd externalpackages/petsc4py-dev and hg pull; hg update to get the latest.
>> 
>>  Yes, someone should add proper support for ./configure to handle hg repositories from petsc-dev and do the pulls and updates automatically but that code has not been written, hence the manual process.
>> 
>>   Barry
>> 
>> 
>> On Nov 15, 2010, at 3:00 PM, Srinath Vadlamani wrote:
>> 
>>> How does one configure petsc-dev to build petsc4py-dev?
>>> I cloned petsc4py-dev but it needs my petsc-dev complex install to have petsc4py symbols?
>>> 
>>> <>Srinath
>>> 
>>> 2010/11/15 Satish Balay <balay at mcs.anl.gov>
>>> [original e-mail didnt make it to the list due to the attached
>>> configure.log. Huge attachments are prohibited on the mailing lists]
>>> 
>>> 
>>> Using configure Options: --with-petsc-arch=real-par-debug --with-scalar-type=real --with-debugging=yes --with-debugger=totalview --download-superlu_dist=1 --download-mumps=1 --download-spooles=1 --with-shared=1 --download-blacs=1 --download-parmetis=1 --download-szip=1 --download-scalapack=1 --download-petsc4py --download-mpi4py --with-shared-libraries -prefix=/Users/srinath/software/petsc-dev-real-par
>>> 
>>> 
>>> petsc4py listed in petsc4py.py is
>>> http://petsc4py.googlecode.com/files/petsc4py-1.1.1.tar.gz Perhaps you
>>> have to use petsc-4py-dev directly to get this working?
>>> 
>>> Lisandro will know..
>>> 
>>> Satish
>>> 
>>> On Mon, 15 Nov 2010, Srinath Vadlamani wrote:
>>> 
>>>> In file included from src/PETSc.c:3:
>>>> src/petsc4py.PETSc.c: In function
>>>> ‘__pyx_pf_8petsc4py_5PETSc_2IS_getBlockSize’:
>>>> src/petsc4py.PETSc.c:49179: warning: implicit declaration of function
>>>> ‘ISBlock’
>>>> src/petsc4py.PETSc.c: In function ‘__pyx_pf_8petsc4py_5PETSc_2IS_getInfo’:
>>>> src/petsc4py.PETSc.c:51132: warning: implicit declaration of function
>>>> ‘ISStride’
>>>> src/petsc4py.PETSc.c: In function ‘__pyx_pf_8petsc4py_5PETSc_3Mat_zeroRows’:
>>>> src/petsc4py.PETSc.c:75725: error: too few arguments to function
>>>> ‘MatZeroRowsIS’
>>>> src/petsc4py.PETSc.c:75750: error: too few arguments to function
>>>> ‘MatZeroRows’
>>>> src/petsc4py.PETSc.c: In function
>>>> ‘__pyx_pf_8petsc4py_5PETSc_3Mat_zeroRowsLocal’:
>>>> src/petsc4py.PETSc.c:75872: error: too few arguments to function
>>>> ‘MatZeroRowsLocalIS’
>>>> src/petsc4py.PETSc.c:75897: error: too few arguments to function
>>>> ‘MatZeroRowsLocal’
>>>> src/petsc4py.PETSc.c: In function
>>>> ‘__pyx_pf_8petsc4py_5PETSc_3KSP_setConvergenceTest’:
>>>> src/petsc4py.PETSc.c:87471: error: ‘KSP_NORM_NO’ undeclared (first use in
>>>> this function)
>>>> src/petsc4py.PETSc.c:87471: error: (Each undeclared identifier is reported
>>>> only once
>>>> src/petsc4py.PETSc.c:87471: error: for each function it appears in.)
>>>> src/petsc4py.PETSc.c: In function
>>>> ‘__pyx_pf_8petsc4py_5PETSc_3KSP_getNormType’:
>>>> src/petsc4py.PETSc.c:88847: error: ‘KSP_NORM_NO’ undeclared (first use in
>>>> this function)
>>>> src/petsc4py.PETSc.c: In function ‘initPETSc’:
>>>> src/petsc4py.PETSc.c:131697: error: ‘KSP_NORM_NO’ undeclared (first use in
>>>> this function)
>>>> error: command 'mpicc' failed with exit status 1
>>>> make[1]: *** [petsc4py] Error 1
>>>> 
>>>> 
>>>> 
>>>> 
>>> 
>>> 
>>> 
>>> -- 
>>> =========================
>>> Srinath Vadlamani, PhD.
>>> Tech-X Corp. Research Scientist
>>> 5621 Arapahoe Ave. Suite A
>>> Boulder, CO 80303
>>> 303-996-2034
>>> =========================
>>> 
>> 
>>