[Nek5000-users] How to run Nek5000 in cluster based on mpich?

nek5000-users at lists.mcs.anl.gov nek5000-users at lists.mcs.anl.gov
Wed Jun 4 21:23:51 CDT 2014


Hi, Paul:
     I read the nekbmpi file and find this:
    mpiexec -np $2 ./nek5000 > $1.log.$2 &
    so the nek5000 is executed by mpi. In mpich, the common way to run a executable program can be run as :
    mpiexec -n XX ./nek5000

    However, when I type this:
    mpiexec -n 32 ./nek5000 > turbChannel.log &
    error returns like:
     Fortran runtime error: File './NEK.rea' does not exist
Best reguards
Xianbei






At 2014-06-04 11:20:52, nek5000-users at lists.mcs.anl.gov wrote:



Hi Xianbei,


Have a look at the nekbmpi script and modify to match the job submission
procedure on your cluster.


Paul


From:nek5000-users-bounces at lists.mcs.anl.gov [nek5000-users-bounces at lists.mcs.anl.gov] on behalf of nek5000-users at lists.mcs.anl.gov [nek5000-users at lists.mcs.anl.gov]
Sent: Wednesday, June 04, 2014 9:34 AM
To: Nek5000
Subject: [Nek5000-users] How to run Nek5000 in cluster based on mpich?


Hi,all:
   I have just built a small cluster of computers, based on mpich.I have tested the capability of this cluster, each node can be called freely.  Now I want to do my simulation in it, however, I don't know how to run Nek. As known, on only 1 computer, one can do like this:
  nekmpi XXX X
or
  nekbmpi XXX X
  while this is not the case in the cluster! I believe most of you have tried this, I'll appreciate if anyone can give me some advice.
Best regards
Xianbei




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