[Nek5000-users] Segmentation Error
nek5000-users at lists.mcs.anl.gov
nek5000-users at lists.mcs.anl.gov
Fri Feb 21 12:12:00 CST 2014
Hi Neks,
I have a setobj() subroutine which defines my wall surface of integral,
This subroutine worked well on my local machine for a smaller mesh.
Recently I launched a simulation with a big mesh, I found that using the
setobj() subroutine gives a error which something looks like this, I
have attached the complete error file with this mail along with logfile
and .usr file.
could some tell me what is going wrong ?
***************************************************************
[lomc-itp-43:15165] *** Process received signal ***
[lomc-itp-43:15159] *** Process received signal ***
[lomc-itp-43:15159] Signal: Segmentation fault (11)
[lomc-itp-43:15159] Signal code: Address not mapped (1)
[lomc-itp-43:15159] Failing at address: (nil)
[lomc-itp-43:15164] *** Process received signal ***
[lomc-itp-43:15160] *** Process received signal ***
[lomc-itp-43:15160] Signal: Segmentation fault (11)
[lomc-itp-43:15160] Signal code: Address not mapped (1)
[lomc-itp-43:15160] Failing at address: (nil)
[lomc-itp-43:15162] *** Process received signal ***
[lomc-itp-43:15162] Signal: Segmentation fault (11)
[lomc-itp-43:15162] Signal code: Address not mapped (1)
[lomc-itp-43:15162] Failing at address: (nil)
[lomc-itp-43:15163] *** Process received signal ***
[lomc-itp-43:15163] Signal: Segmentation fault (11)
[lomc-itp-43:15163] Signal code: Address not mapped (1)
[lomc-itp-43:15163] Failing at address: (nil)
[lomc-itp-43:15164] Signal: Segmentation fault (11)
[lomc-itp-43:15164] Signal code: Address not mapped (1)
[lomc-itp-43:15164] Failing at address: (nil)
********************************************************************
Thanks,
Kamal
-------------- next part --------------
c-----------------------------------------------------------------------
C
C USER SPECIFIED ROUTINES:
C
C - boundary conditions
C - initial conditions
C - variable properties
C - local acceleration for fluid (a)
C - forcing function for passive scalar (q)
C - general purpose routine for checking errors etc.
C
c-----------------------------------------------------------------------
subroutine uservp (ix,iy,iz,eg)
include 'SIZE'
include 'TOTAL'
include 'NEKUSE'
integer e,f,eg
c e = gllel(eg)
udiff =0.
utrans=0.
return
end
c-----------------------------------------------------------------------
subroutine userf (ix,iy,iz,eg)
include 'SIZE'
include 'TOTAL'
include 'NEKUSE'
integer e,f,eg
c e = gllel(eg)
c Note: this is an acceleration term, NOT a force!
c Thus, ffx will subsequently be multiplied by rho(x,t).
ffx = 0.0
ffy = 0.0
ffz = 0.0
return
end
c-----------------------------------------------------------------------
subroutine userq (ix,iy,iz,eg)
include 'SIZE'
include 'TOTAL'
include 'NEKUSE'
integer e,f,eg
c e = gllel(eg)
qvol = 0.0
source = 0.0
return
end
c-----------------------------------------------------------------------
subroutine userchk
include 'SIZE'
include 'TOTAL'
include 'NEKUSE'
parameter (lt=lx1*ly1*lz1*lelt)
common /myjunk/ vort(lt,3),w1(lt),w2(lt)
common /Residual_arrays/ uo(lt), vo(lt), wo(lt)
real h1, semi, l2, linf, residu
if (mod(istep,iostep).eq.0) then
call comp_vort3(vort,w1,w2,vx,vy,vz)
call outpost(vort(1,1),vort(1,2),vort(1,3),pr,t,'vrt')
end if
if(istep.eq.0) then
call set_obj
call rzero(x0,3)
end if
if (mod(istep,2).eq.0) call torque_calc(1.0,x0,.true.,.true.)
call opsub2(uo,vo,wo,vx,vy,vz)
call normvc(h1,semi,l2,linf,uo,vo,wo)
residu = l2/dt
call opcopy(uo,vo,wo,vx,vy,vz)
if(istep.eq.0) then
if(nid.eq.0) open(unit=10,file='residu.dat')
endif
if(nid.eq.0) write(10,*) istep, residu
if(istep.eq.nsteps) then
if(nid.eq.0) close(10)
end if
if((istep.gt.10).AND.(residu.lt.1e-8)) then
call outpost(vx,vy,vz,pr,t,'BF_')
if(nid.eq.0) close(10)
call exitt
endif
c
ifxyo = .true.
if (iostep.gt.0.and.istep.gt.iostep) ifxyo = .false.
return
end
c-----------------------------------------------------------------------
subroutine userbc (ix,iy,iz,iside,ieg)
include 'SIZE'
include 'TOTAL'
include 'NEKUSE'
integer e,eg
common /mygeom/ xmin,xmax,ymin,ymax
delta = 1
if (z.le.0) delta = 0.5
xd=x/delta
yd=y/delta
rr=xd*xd+yd*yd
scale = 2*(0.5/delta)**2 ! Ubar = 1 in inlet pipe (r=0.5)
ux=0.0
uy=0.0
uz=scale*(1-rr)
temp=0.0
return
end
c-----------------------------------------------------------------------
subroutine useric (ix,iy,iz,ieg)
include 'SIZE'
include 'TOTAL'
include 'NEKUSE'
integer e,eg
delta = 1
if (z.le.0) delta = 0.5
xd=x/delta
yd=y/delta
rr=xd*xd+yd*yd
scale = 2*(0.5/delta)**2 ! Ubar = 1 in inlet pipe (r=0.5)
ux=0.0
uy=0.0
uz=scale*(1-rr)
temp=0.0
return
end
c-----------------------------------------------------------------------
subroutine usrdat
include 'SIZE'
include 'TOTAL'
c
return
end
c-----------------------------------------------------------------------
subroutine usrdat3
include 'SIZE'
include 'TOTAL'
c
return
end
c-----------------------------------------------------------------------
subroutine usrdat2 ! Modify geometry
include 'SIZE'
include 'TOTAL'
common /mygeom/ xmin,xmax,ymin,ymax
n = nx1*ny1*nz1*nelt
scal = 0.5 ! Rescale radius from 1.0 to 0.5
call cmult(xm1,scal,n)
call cmult(ym1,scal,n)
xmin = glmin(xm1,n)
ymin = glmin(ym1,n)
xmax = glmax(xm1,n)
ymax = glmax(ym1,n)
smax = 2.0
z0 = 0.
z1 = 1.
do i=1,n
x = xm1(i,1,1,1)
y = ym1(i,1,1,1)
z = zm1(i,1,1,1)
scale = 1.
if (z.gt.z0) scale = 1 + (smax-1)*(z-z0)/(z1-z0)
if (z.gt.z1) scale = smax
xm1(i,1,1,1) = scale*x
ym1(i,1,1,1) = scale*y
enddo
param(59) = 1 ! Force ifdfrm=.true. ( 8/26/03 )
ifxyo = .true.
c call outpost(xm1,ym1,zm1,pr,t,' ')
c call exitt
return
end
c-----------------------------------------------------------------------
subroutine set_obj ! define objects for surface integrals
c
include 'SIZE'
include 'TOTAL'
c
integer e,f
c
c Define new objects
c
nobj = 1 ! for Periodic
iobj = 0
do ii=nhis+1,nhis+nobj
iobj = iobj+1
hcode(10,ii) = 'I'
hcode( 1,ii) = 'F' ! 'F'
hcode( 2,ii) = 'F' ! 'F'
hcode( 3,ii) = 'F' ! 'F'
lochis(1,ii) = iobj
enddo
nhis = nhis + nobj
c
if (maxobj.lt.nobj) write(6,*) 'increase maxobj in SIZEu. rm *.o'
if (maxobj.lt.nobj) call exitt
c
nxyz = nx1*ny1*nz1
do e=1,nelv
do f=1,2*ndim
if (cbc(f,e,1).eq.'W ') then
iobj = 1
if (iobj.gt.0) then
nmember(iobj) = nmember(iobj) + 1
mem = nmember(iobj)
ieg = lglel(e)
object(iobj,mem,1) = ieg
object(iobj,mem,2) = f
c write(6,1) iobj,mem,f,ieg,e,nid,' OBJ'
1 format(6i9,a4)
endif
c
endif
enddo
enddo
write(6,*) 'number',(nmember(k),k=1,4)
c
return
end
-------------- next part --------------
/----------------------------------------------------------\\
| _ __ ______ __ __ ______ ____ ____ ____ |
| / | / // ____// //_/ / ____/ / __ \\ / __ \\ / __ \\ |
| / |/ // __/ / ,< /___ \\ / / / // / / // / / / |
| / /| // /___ / /| | ____/ / / /_/ // /_/ // /_/ / |
| /_/ |_//_____//_/ |_|/_____/ \\____/ \\____/ \\____/ |
| |
|----------------------------------------------------------|
| |
| NEK5000: Open Source Spectral Element Solver |
| COPYRIGHT (c) 2008-2010 UCHICAGO ARGONNE, LLC |
| Version: 1.0rc1 / SVN r996 |
| Web: http://nek5000.mcs.anl.gov |
| |
\\----------------------------------------------------------/
Number of processors: 8
REAL wdsize : 8
INTEGER wdsize : 4
Beginning session:
/home/kamal/neksamples/pipe2000/divpipe.rea
timer accuracy: 0.0000000E+00 sec
read .rea file
nelgt/nelgv/lelt: 25200 25200 3200
lx1 /lx2 /lx3 : 5 5 5
mapping elements to processors
7 3150 3150 25200 25200 NELV
0 3150 3150 25200 25200 NELV
2 3150 3150 25200 25200 NELV
4 3150 3150 25200 25200 NELV
6 3150 3150 25200 25200 NELV
1 3150 3150 25200 25200 NELV
3 3150 3150 25200 25200 NELV
5 3150 3150 25200 25200 NELV
RANK 0 IEG 22005 22006 22007 22008 22010 22012 22014 22016
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22379 22380 22381 22382 22383 22384 22385 22386
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22395 22396 22397 22398 22399 22400 22401 22402
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22683 22684 22685 22686 22687 22688 22689 22690
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22707 22708 22709 22710 22711 22712 22713 22714
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24203 24204 24205 24206 24207 24208 24209 24210
24211 24212 24213 24214 24215 24216 24217 24218
24219 24220 24221 24222 24223 24224 24225 24226
24227 24228 24229 24230 24231 24232 24233 24234
24235 24236 24237 24238 24239 24240 24241 24242
24243 24244 24245 24246 24247 24248 24249 24250
24251 24252 24253 24254 24255 24256 24257 24258
24259 24260 24261 24262 24263 24264 24265 24266
24267 24268 24269 24270 24271 24272 24273 24274
24275 24276 24277 24278 24279 24280 24281 24282
24283 24284 24285 24286 24287 24288 24289 24290
24291 24292 24293 24294 24295 24296 24297 24298
24299 24300 24301 24302 24303 24304 24305 24306
24307 24308 24309 24310 24311 24312 24313 24314
24315 24316 24317 24318 24319 24320 24321 24322
24323 24324 24325 24326 24327 24328 24329 24330
24331 24332 24333 24334 24335 24336 24337 24338
24339 24340 24341 24342 24343 24344 24345 24346
24347 24348 24349 24350 24351 24352 24353 24354
24355 24356 24357 24358 24359 24360 24361 24362
24363 24364 24365 24366 24367 24368 24369 24370
24371 24372 24373 24374 24375 24376 24377 24378
24379 24380 24381 24382 24383 24384 24385 24386
24387 24388 24389 24390 24391 24392 24393 24394
24395 24396 24397 24398 24399 24400 24401 24402
24403 24404 24405 24406 24407 24408 24409 24410
24411 24412 24413 24414 24415 24416 24417 24418
24419 24420 24421 24422 24423 24424 24425 24426
24427 24428 24429 24430 24431 24432 24433 24434
24435 24436 24437 24438 24439 24440 24441 24442
24443 24444 24445 24446 24447 24448 24449 24450
24451 24452 24453 24454 24455 24456 24457 24458
24459 24460 24461 24462 24463 24464 24465 24466
24467 24468 24469 24470 24471 24472 24473 24474
24475 24476 24477 24478 24479 24480 24481 24482
24483 24484 24485 24486 24487 24488 24489 24490
24491 24492 24493 24494 24495 24496 24497 24498
24499 24500 24501 24502 24503 24504 24505 24506
24507 24508 24509 24510 24511 24512 24513 24514
24515 24516 24517 24518 24519 24520 24521 24522
24523 24524 24525 24526 24527 24528 24529 24530
24531 24532 24533 24534 24535 24536 24537 24538
24539 24540 24541 24542 24543 24544 24545 24546
24547 24548 24549 24550 24551 24552 24553 24554
24555 24556 24557 24558 24559 24560 24561 24562
24563 24564 24565 24566 24567 24568 24569 24570
24571 24572 24573 24574 24575 24576 24577 24578
24579 24580 24581 24582 24583 24584 24585 24586
24587 24588 24589 24590 24591 24592 24593 24594
24595 24596 24597 24598 24599 24600 24601 24602
24603 24604 24605 24606 24607 24608 24609 24610
24611 24612 24613 24614 24615 24616 24617 24618
24619 24620 24621 24622 24623 24624 24625 24626
24627 24628 24629 24630 24631 24632 24633 24634
24635 24636 24637 24638 24639 24640 24641 24642
24643 24644 24645 24646 24647 24648 24649 24650
24651 24652 24653 24654 24655 24656 24657 24658
24659 24660 24661 24662 24663 24664 24665 24666
24667 24668 24669 24670 24671 24672 24673 24674
24675 24676 24677 24678 24679 24680 24681 24682
24683 24684 24685 24686 24687 24688 24689 24690
24691 24692 24693 24694 24695 24696 24697 24698
24699 24700 24701 24702 24703 24704 24705 24706
24707 24708 24709 24710 24711 24712 24713 24714
24715 24716 24717 24718 24719 24720 24721 24722
24723 24724 24725 24726 24727 24728 24729 24730
24731 24732 24733 24734 24735 24736 24737 24738
24739 24740 24741 24742 24743 24744 24745 24746
24747 24748 24749 24750 24751 24752 24753 24754
24755 24756 24757 24758 24759 24760 24761 24762
24763 24764 24765 24766 24767 24768 24769 24770
24771 24772 24773 24774 24775 24776 24777 24778
24779 24780 24781 24782 24783 24784 24785 24786
24787 24788 24789 24790 24791 24792 24793 24794
24795 24796 24797 24798 24799 24800 24801 24802
24803 24804 24805 24806 24807 24808 24809 24810
24811 24812 24813 24814 24815 24816 24817 24818
24819 24820 24821 24822 24823 24824 24825 24826
24827 24828 24829 24830 24831 24832 24833 24834
24835 24836 24837 24838 24839 24840 24841 24842
24843 24844 24845 24846 24847 24848 24849 24850
24851 24852 24853 24854 24855 24856 24857 24858
24859 24860 24861 24862 24863 24864 24865 24866
24867 24868 24869 24870 24871 24872 24873 24874
24875 24876 24877 24878 24879 24880 24881 24882
24883 24884 24885 24886 24887 24888 24889 24890
24891 24892 24893 24894 24895 24896 24897 24898
24899 24900 24901 24902 24903 24904 24905 24906
24907 24908 24909 24910 24911 24912 24913 24914
24915 24916 24917 24918 24919 24920 24921 24922
24923 24924 24925 24926 24927 24928 24929 24930
24931 24932 24933 24934 24935 24936 24937 24938
24939 24940 24941 24942 24943 24944 24945 24946
24947 24948 24949 24950 24951 24952 24953 24954
24955 24956 24957 24958 24959 24960 24961 24962
24963 24964 24965 24966 24967 24968 24969 24970
24971 24972 24973 24974 24975 24976 24977 24978
24979 24980 24981 24982 24983 24984 24985 24986
24987 24988 24989 24990 24991 24992 24993 24994
24995 24996 24997 24998 24999 25000 25001 25002
25003 25004 25005 25006 25007 25008 25009 25010
25011 25012 25013 25014 25015 25016 25017 25018
25019 25020 25021 25022 25023 25024 25025 25026
25027 25028 25029 25030 25031 25032 25033 25034
25035 25036 25037 25038 25039 25040 25041 25042
25043 25044 25045 25046 25047 25048 25049 25050
25051 25052 25053 25054 25055 25056 25057 25058
25059 25060 25061 25062 25063 25064 25065 25066
25067 25068 25069 25070 25071 25072 25073 25074
25075 25076 25077 25078 25079 25080 25081 25082
25083 25084 25085 25086 25087 25088 25089 25090
25091 25092 25093 25094 25095 25096 25097 25098
25099 25100 25101 25102 25103 25104 25105 25106
25107 25108 25109 25110 25111 25112 25113 25114
25115 25116 25117 25118 25119 25120 25121 25122
25123 25124 25125 25126 25127 25128 25129 25130
25131 25132 25133 25134 25135 25136 25137 25138
25139 25140 25141 25142 25143 25144 25145 25146
25147 25148 25149 25150 25151 25152 25153 25154
25155 25156 25157 25158 25159 25160 25161 25162
25163 25164 25165 25166 25167 25168 25169 25170
25171 25172 25173 25174 25175 25176 25177 25178
25179 25180 25181 25182 25183 25184 25185 25186
25187 25188 25189 25190 25191 25192 25193 25194
25195 25196 25197 25198 25199 25200
element load imbalance: 0 3150 3150
done :: mapping elements to processors
0 objects found
done :: read .rea file 0.70946 sec
Reset the target Courant number to .5
setup mesh topology
Right-handed check complete for 25200 elements. OK.
setvert3d: 5 975293 1655693 975293 975293
call usrsetvert
done :: usrsetvert
gs_setup: 11763 unique labels shared
pairwise times (avg, min, max): 1.16765e-05 1.11103e-05 1.24931e-05
crystal router : 3.6639e-05 3.60012e-05 3.76225e-05
all reduce : 0.00013693 0.00013659 0.000137186
used all_to_all method: pairwise
handle bytes (avg, min, max): 3.4036e+06 3375444 3417612
buffer bytes (avg, min, max): 47052 25616 59104
setupds time 3.2100E-01 seconds 0 5 975293 25200
8 max multiplicity
done :: setup mesh topology
call usrdat
done :: usrdat
generate geometry data
vol_t,vol_v: 486.94699737572313 486.94699737572313
done :: generate geometry data
call usrdat2
done :: usrdat2
regenerate geometry data 1
vol_t,vol_v: 473.85702446339303 473.85702446339303
NOTE: All elements deformed , param(59) ^=0
done :: regenerate geometry data 1
verify mesh topology
-1.0000000000000000 1.0000000000000000 Xrange
-1.0000000000000000 1.0000000000000000 Yrange
-5.0000000000000000 150.00000000000000 Zrange
done :: verify mesh topology
118 Parameters from file:/home/kamal/neksamples/pipe2000/divpipe.rea
1 1.00000 p001 DENSITY
2 -2000.000 p002 VISCOS
7 1.00000 p007 RHOCP
8 1.00000 p008 CONDUCT
11 1000000.000 p011 NSTEPS
12 -0.100000E-02 p012 DT
15 1000.0000 p015 IOSTEP
18 -20.0000 p018 GRID < 0 --> # cells on screen
19 -1.00000 p019 INTYPE
20 10.0000 p020 NORDER
21 0.100000E-05 p021 DIVERGENCE
22 0.100000E-06 p022 HELMHOLTZ
24 0.100000E-01 p024 TOLREL
25 0.100000E-01 p025 TOLABS
26 1.00000 p026 COURANT/NTAU
27 2.00000 p027 TORDER
28 0.00000 p028 TORDER: mesh velocity (0: p28=p27)
59 0.00000 p059 !=0 --> full Jac. eval. for each el.
65 1.00000 p065 #iofiles (eg, 0 or 64); <0 --> sep. dirs
66 6.00000 p066 output : <0=ascii, else binary
67 6.00000 p067 restart: <0=ascii, else binary
93 20.0000 p093 Number of previous pressure solns saved
94 3.00000 p094 start projecting velocity after p94 step
95 5.00000 p095 start projecting pressure after p95 step
99 0.00000 p099 dealiasing: <0--> off/3--> old/4--> new
102 1.00000 p102 Dump out divergence at each time step
103 0.100000E-01 p103 weight of stabilizing filter (.01)
IFTRAN = T
IFFLOW = T
IFHEAT = F
IFSPLIT = T
IFLOMACH = F
IFUSERVP = F
IFUSERMV = F
IFSTRS = F
IFCHAR = F
IFCYCLIC = F
IFAXIS = F
IFMVBD = F
IFMELT = F
IFMODEL = F
IFKEPS = F
IFMOAB = F
IFNEKNEK = F
IFSYNC = T
IFVCOR = F
IFINTQ = F
IFCWUZ = F
IFSWALL = F
IFGEOM = F
IFSURT = F
IFWCNO = F
IFTMSH for field 1 = F
IFADVC for field 1 = T
IFNONL for field 1 = F
Dealiasing enabled, lxd= 8
Estimated eigenvalues
EIGAA = 1.6450710020462991
EIGGA = 283918.58986179990
EIGAE = 4.10805594218079453E-004
EIGAS = 2.08099221708910814E-005
EIGGE = 283918.58986179990
EIGGS = 2.0000000000000000
verify mesh topology
-1.0000000000000000 1.0000000000000000 Xrange
-1.0000000000000000 1.0000000000000000 Yrange
-5.0000000000000000 150.00000000000000 Zrange
done :: verify mesh topology
E-solver strategy: 0 itr
mg_nx: 1 2 4
mg_ny: 1 2 4
mg_nz: 1 2 4
call usrsetvert
done :: usrsetvert
gs_setup: 786 unique labels shared
pairwise times (avg, min, max): 1.89245e-06 1.69277e-06 2.00272e-06
crystal router : 5.65052e-06 5.60284e-06 5.6982e-06
all reduce : 1.60843e-05 1.59979e-05 1.62125e-05
used all_to_all method: pairwise
handle bytes (avg, min, max): 235250 233148 236388
buffer bytes (avg, min, max): 3144 1712 3952
setupds time 5.6469E-03 seconds 1 2 28124 25200
setvert3d: 4 503170 704770 503170 503170
call usrsetvert
done :: usrsetvert
gs_setup: 6664 unique labels shared
pairwise times (avg, min, max): 9.01222e-06 8.4877e-06 9.20296e-06
crystal router : 2.15054e-05 2.13861e-05 2.16961e-05
all reduce : 8.18253e-05 8.1706e-05 8.18968e-05
used all_to_all method: pairwise
handle bytes (avg, min, max): 1.90516e+06 1888956 1913300
buffer bytes (avg, min, max): 26656 14512 33488
setupds time 1.8922E-01 seconds 2 4 503170 25200
setvert3d: 3 187447 212647 187447 187447
call usrsetvert
done :: usrsetvert
gs_setup: 3005 unique labels shared
pairwise times (avg, min, max): 4.90844e-06 4.60148e-06 5.31673e-06
crystal router : 1.1456e-05 1.13964e-05 1.14918e-05
all reduce : 3.45439e-05 3.42846e-05 3.46899e-05
used all_to_all method: pairwise
handle bytes (avg, min, max): 849046 841524 852892
buffer bytes (avg, min, max): 12020 6544 15104
setupds time 1.0921E-01 seconds 3 3 187447 25200
setvert3d: 5 975293 1655693 975293 975293
call usrsetvert
done :: usrsetvert
gs_setup: 11763 unique labels shared
pairwise times (avg, min, max): 1.13785e-05 1.0705e-05 1.19925e-05
crystal router : 3.50952e-05 3.48091e-05 3.54052e-05
all reduce : 0.000132442 0.000132108 0.000132585
used all_to_all method: pairwise
handle bytes (avg, min, max): 3.4036e+06 3375444 3417612
buffer bytes (avg, min, max): 47052 25616 59104
setupds time 3.1718E-01 seconds 4 5 975293 25200
regenerate geometry data 1
vol_t,vol_v: 473.85702446339303 473.85702446339303
NOTE: All elements deformed , param(59) ^=0
done :: regenerate geometry data 1
h1_mg_nx: 1 2 4
h1_mg_ny: 1 2 4
h1_mg_nz: 1 2 4
call usrsetvert
done :: usrsetvert
gs_setup: 786 unique labels shared
pairwise times (avg, min, max): 1.85966e-06 1.81198e-06 1.90735e-06
crystal router : 5.47469e-06 5.38826e-06 5.50747e-06
all reduce : 1.67131e-05 1.66178e-05 1.68085e-05
used all_to_all method: pairwise
handle bytes (avg, min, max): 235250 233148 236388
buffer bytes (avg, min, max): 3144 1712 3952
setupds time 9.0699E-03 seconds 5 2 28124 25200
setvert3d: 4 503170 704770 503170 503170
call usrsetvert
done :: usrsetvert
gs_setup: 6664 unique labels shared
pairwise times (avg, min, max): 7.52509e-06 7.00951e-06 7.82013e-06
crystal router : 2.11596e-05 2.10047e-05 2.13146e-05
all reduce : 8.20041e-05 8.18014e-05 8.20875e-05
used all_to_all method: pairwise
handle bytes (avg, min, max): 1.90516e+06 1888956 1913300
buffer bytes (avg, min, max): 26656 14512 33488
setupds time 1.9658E-01 seconds 6 4 503170 25200
setvert3d: 3 187447 212647 187447 187447
call usrsetvert
done :: usrsetvert
gs_setup: 3005 unique labels shared
pairwise times (avg, min, max): 4.78625e-06 4.3869e-06 5.19753e-06
crystal router : 1.0848e-05 1.06812e-05 1.10149e-05
all reduce : 3.41892e-05 3.40939e-05 3.42846e-05
used all_to_all method: pairwise
handle bytes (avg, min, max): 849046 841524 852892
buffer bytes (avg, min, max): 12020 6544 15104
setupds time 1.0998E-01 seconds 7 3 187447 25200
setvert3d: 5 975293 1655693 975293 975293
call usrsetvert
done :: usrsetvert
gs_setup: 11763 unique labels shared
pairwise times (avg, min, max): 1.11341e-05 1.05143e-05 1.1611e-05
crystal router : 3.53426e-05 3.50237e-05 3.56197e-05
all reduce : 0.000133416 0.000133109 0.000133705
used all_to_all method: pairwise
handle bytes (avg, min, max): 3.4036e+06 3375444 3417612
buffer bytes (avg, min, max): 47052 25616 59104
setupds time 3.2016E-01 seconds 8 5 975293 25200
setvert3d: 5 975293 1655693 975293 975293
call usrsetvert
done :: usrsetvert
gs_setup: 11763 unique labels shared
pairwise times (avg, min, max): 1.10209e-05 1.02997e-05 1.13964e-05
crystal router : 3.50356e-05 3.47853e-05 3.52859e-05
all reduce : 0.000133777 0.000133705 0.000133896
used all_to_all method: pairwise
handle bytes (avg, min, max): 3.4036e+06 3375444 3417612
buffer bytes (avg, min, max): 47052 25616 59104
setupds time 3.1833E-01 seconds 9 5 975293 25200
setvert3d: 7 2388739 5538739 2388739 2388739
call usrsetvert
done :: usrsetvert
gs_setup: 26281 unique labels shared
pairwise times (avg, min, max): 2.32637e-05 2.19822e-05 2.39849e-05
crystal router : 7.87288e-05 7.81059e-05 7.94172e-05
all reduce : 0.00026685 0.000265884 0.000267482
used all_to_all method: pairwise
handle bytes (avg, min, max): 7.72743e+06 7665588 7757948
buffer bytes (avg, min, max): 105124 57232 132032
setupds time 6.9914E-01 seconds 10 7 2388739 25200
setup h1 coarse grid, nx_crs= 2
call usrsetvert
done :: usrsetvert
gs_setup: 786 unique labels shared
pairwise times (avg, min, max): 1.97589e-06 1.78814e-06 2.19345e-06
crystal router : 4.18425e-06 4.1008e-06 4.29153e-06
all reduce : 1.62125e-05 1.62125e-05 1.62125e-05
used all_to_all method: pairwise
handle bytes (avg, min, max): 235250 233148 236388
buffer bytes (avg, min, max): 3144 1712 3952
done :: setup h1 coarse grid 3.1613740921020508 sec
call usrdat3
done :: usrdat3
set initial conditions
nekuic (1) for ifld 1
call nekuic for vel
xyz min -1.0000 -1.0000 -5.0000
uvwpt min -0.10000E-19 -0.10000E-19 -0.12378E-05 -0.10000E-19 -0.10000E-19
PS min 0.0000 0.0000 0.99000E+22
xyz max 1.0000 1.0000 150.00
uvwpt max 0.80000E-19 0.80000E-19 2.0000 0.80000E-19 0.80000E-19
PS max 0.0000 0.0000 -0.99000E+22
done :: set initial conditions
call userchk
schfile:/home/kamal/neksamples/pipe2000/divpipe.sch
call outfld: ifpsco: F
0 0.0000E+00 Write checkpoint:
0 0 OPEN: vrtdivpipe0.f00001
0 0.0000E+00 done :: Write checkpoint
file size = 86. MB
avg data-throughput = 264.1MB/s
io-nodes = 1
number 640 0 0 0
number 624 0 0 0
number 624 0 0 0
number 630 0 0 0
number 624 0 0 0
number 640 0 0 0
number 624 0 0 0
number 634 0 0 0
0 0.00000000000E+00 1.24088603539E-10 1.12552189325E-25 1.24088603539E-10 1dragx
0 0.00000000000E+00 -1.75487705534E-10 -6.86560965255E-26 -1.75487705534E-10 1dragy
0 0.00000000000E+00 5.33411814488E-01 -2.85097622410E-20 5.33411814488E-01 1dragz
0 0.00000000000E+00 9.42869304453E-08 7.45679573773E-24 9.42869304453E-08 1torqx
0 0.00000000000E+00 6.66710102897E-08 1.20869464013E-23 6.66710102897E-08 1torqy
0 0.00000000000E+00 7.42311196653E-17 -1.56051540126E-32 7.42311196653E-17 1torqz
-------------- next part --------------
[lomc-itp-43:15191] *** Process received signal ***
[lomc-itp-43:15191] Signal: Segmentation fault (11)
[lomc-itp-43:15191] Signal code: Address not mapped (1)
[lomc-itp-43:15191] Failing at address: (nil)
[lomc-itp-43:15185] *** Process received signal ***
[lomc-itp-43:15185] Signal: Segmentation fault (11)
[lomc-itp-43:15185] Signal code: Address not mapped (1)
[lomc-itp-43:15185] Failing at address: (nil)
[lomc-itp-43:15186] *** Process received signal ***
[lomc-itp-43:15186] Signal: Segmentation fault (11)
[lomc-itp-43:15186] Signal code: Address not mapped (1)
[lomc-itp-43:15186] Failing at address: (nil)
[lomc-itp-43:15188] *** Process received signal ***
[lomc-itp-43:15188] Signal: Segmentation fault (11)
[lomc-itp-43:15188] Signal code: Address not mapped (1)
[lomc-itp-43:15188] Failing at address: (nil)
[lomc-itp-43:15189] *** Process received signal ***
[lomc-itp-43:15189] Signal: Segmentation fault (11)
[lomc-itp-43:15189] Signal code: Address not mapped (1)
[lomc-itp-43:15189] Failing at address: (nil)
[lomc-itp-43:15184] *** Process received signal ***
[lomc-itp-43:15184] Signal: Segmentation fault (11)
[lomc-itp-43:15184] Signal code: Address not mapped (1)
[lomc-itp-43:15184] Failing at address: (nil)
more error [lomc-itp-43:15186] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x364a0) [0x7ff4bdcdf4a0]
[lomc-itp-43:15186] *** End of error message ***
[lomc-itp-43:15188] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x364a0) [0x7fee28d0f4a0]
[lomc-itp-43:15188] *** End of error message ***
[lomc-itp-43:15190] Signal: Segmentation fault (11)
[lomc-itp-43:15190] Signal code: Address not mapped (1)
[lomc-itp-43:15190] Failing at address: (nil)
[lomc-itp-43:15184] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x364a0) [0x7f029087f4a0]
[lomc-itp-43:15184] *** End of error message ***
[lomc-itp-43:15189] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x364a0) [0x7f172c1664a0]
[lomc-itp-43:15189] *** End of error message ***
[lomc-itp-43:15191] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x364a0) [0x7f8c6bc984a0]
[lomc-itp-43:15191] *** End of error message ***
[lomc-itp-43:15185] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x364a0) [0x7fa56d27a4a0]
[lomc-itp-43:15185] *** End of error message ***
[lomc-itp-43:15187] *** Process received signal ***
[lomc-itp-43:15187] Signal: Segmentation fault (11)
[lomc-itp-43:15187] Signal code: Address not mapped (1)
[lomc-itp-43:15187] Failing at address: (nil)
[lomc-itp-43:15187] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x364a0) [0x7f1140dbf4a0]
[lomc-itp-43:15190] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x364a0) [0x7f5eee3594a0]
[lomc-itp-43:15190] *** End of error message ***
[lomc-itp-43:15187] *** End of error message ***
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