[Swift-user] Question about walltime

Lorenzo Pesce lpesce at uchicago.edu
Mon Jan 14 14:15:37 CST 2013


I have three entries like this in my tc file:

# custom entries
pbs   GATKIntRecalWrapper ${GATKIntRecalWrapper} INSTALLED  AMD64::LINUX  ENV::TMP="$GATK_TMP";GLOBUS::maxwalltime="15:00:00"
pbs   GATKBQRecalWrapper ${GATKBQRecalWrapper} INSTALLED  AMD64::LINUX  ENV::TMP="$GATK_TMP";GLOBUS::maxwalltime="62:00:00"
pbs   PicardMarkDuplWrapper ${PicardMarkDuplWrapper} INSTALLED  AMD64::LINUX  ENV::TMP="$PICARD_TMP";GLOBUS::maxwalltime="08:00:00"


What do I do with my sites file?
1) Can I skip the maxwalltime alltogether?
2) If not, do I need to put a value larger than all of them, smaller than all of them or it doesn't matter?

My impression is that it is used first and nothing is sent if the time isn't smaller, but I am not sure. 

Thanks,

Lorenzo
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