[Swift-user] swift on midway: apps and modules

[Neil Best]

Running on Midway, it looks like there is a problem with defining apps
that come from software modules.

[nbest at midway-login1 narr]$ pwd
/project/joshuaelliott/narr
[nbest at midway-login1 narr]$ runswift narr.swift
++ swift -config config -tc.file applist -sites.file sites.xml narr.swift
Warning: Parameter grb, on line 12, shadows variable of same name on line 5
Swift trunk swift-r6083 cog-r3522

RunID: 20121129-2115-mos5x5ad
Progress:  time: Thu, 29 Nov 2012 21:15:40 +0000
Progress:  time: Thu, 29 Nov 2012 21:15:57 +0000  Initializing:6
Progress:  time: Thu, 29 Nov 2012 21:15:58 +0000  Selecting site:1022
Initializing site shared directory:1  Stage in:1
Progress:  time: Thu, 29 Nov 2012 21:15:59 +0000  Selecting site:623
Stage in:399  Submitting:2
Progress:  time: Thu, 29 Nov 2012 21:16:00 +0000  Selecting site:623
Stage in:388  Submitted:13
Progress:  time: Thu, 29 Nov 2012 21:16:01 +0000  Selecting site:623
Stage in:371  Submitting:1  Submitted:29
Progress:  time: Thu, 29 Nov 2012 21:16:02 +0000  Selecting site:623
Stage in:359  Submitting:1  Failed but can retry:41
Progress:  time: Thu, 29 Nov 2012 21:16:03 +0000  Selecting site:623
Stage in:341  Active:1  Failed but can retry:59
Progress:  time: Thu, 29 Nov 2012 21:16:04 +0000  Selecting site:623
Stage in:322  Submitting:1  Failed but can retry:78
Progress:  time: Thu, 29 Nov 2012 21:16:05 +0000  Selecting site:623
Stage in:302  Active:1  Failed but can retry:98
. . .
Progress:  time: Thu, 29 Nov 2012 21:18:16 +0000  Selecting site:623
Stage in:14  Submitting:1  Failed but can retry:386
Progress:  time: Thu, 29 Nov 2012 21:18:17 +0000  Selecting site:623
Stage in:10  Submitting:1  Failed but can retry:390
Progress:  time: Thu, 29 Nov 2012 21:18:19 +0000  Selecting site:623
Stage in:5  Submitting:1  Failed but can retry:395
Progress:  time: Thu, 29 Nov 2012 21:18:20 +0000  Selecting site:622
Stage in:2  Failed:3  Failed but can retry:397
Execution failed:
Exception in cnvgrib:
    Arguments: [-g12, -nv,
data/grb/197901/narr-a_221_19790116_0600_000.grb,
data/grb2/197901/narr-a_221_19790116_0600_000.grb2]
    Host: cluster
    Directory: narr-20121129-2115-mos5x5ad/jobs/r/cnvgrib-ricszn1l
Caused by:
Job failed with and exit code of 127
org.globus.cog.abstraction.impl.common.execution.JobException: Job
failed with and exit code of 127 (exit code: 127)
at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:38)
at org.globus.cog.karajan.workflow.service.handlers.RequestHandler.receiveCompleted(RequestHandler.java:90)
at org.globus.cog.karajan.workflow.service.channels.AbstractKarajanChannel.handleRequest(AbstractKarajanChannel.java:502)
at org.globus.cog.karajan.workflow.service.channels.AbstractStreamKarajanChannel.stepNIO(AbstractStreamKarajanChannel.java:238)
at org.globus.cog.karajan.workflow.service.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97)
at org.globus.cog.karajan.workflow.service.channels.NIOMultiplexer.run(NIOMultiplexer.java:56)
 (exit code: 127)
cnvgrib, narr.swift, line 17
[nbest at midway-login1 narr]$ cat applist
cluster cnvgrib /software/cnvgrib-1.4-el6-x86_64/bin/cnvgrib null null null
cluster wgrib2 /software/wgrib2-0.1-el6-x86_64/bin/wgrib2 null null null

My app definition looks like this:

app (file grb2) cnvgrib (file grb) {
  cnvgrib "-g12" "-nv" @grb @grb2;
}

I don't see the directory referenced in the "Exception" stanza.  Where
should that be?

Does this have anything to do with the fact that I am calling an
executable from Modules, and therefore the Swift workers have bad
environments?