[Swift-user] gram on ranger

Tue Oct 11 14:05:34 CDT 2011

On Tue, Oct 11, 2011 at 11:49 AM, David Kelly <davidk at ci.uchicago.edu>wrote:

>
> That could be it.. maybe a cleanup script is not getting the right
> parameters and failing. Do you happen to have a copy of the coaster log?

just put it in /home/skenny/swift_logs

> Maybe there will be some clues in there.
>
> ----- Original Message -----
> > From: "Sarah Kenny" <skenny at uchicago.edu>
> > To: "David Kelly" <davidk at ci.uchicago.edu>
> > Cc: "Swift Devel" <swift-devel at ci.uchicago.edu>, "Swift User" <
> swift-user at ci.uchicago.edu>, "Justin M Wozniak"
> > <wozniak at mcs.anl.gov>
> > Sent: Tuesday, October 11, 2011 1:32:37 PM
> > Subject: Re: [Swift-user] gram on ranger
> > so, this workflow completes all the jobs but then just hangs
> > indefinitely at the end...maybe a stray cleanup job?
> >
> > log is here:
> >
> > /home/skenny/swift_logs/corr-20111010-2104-fl5yngd9.log
> >
> > just tweaked the sites file a bit from what david sent me:
> >
> > <config>
> > <pool handle="RANGER">
> > <execution provider="coaster" jobManager="gt2:SGE" url="
> > gatekeeper.ranger.tacc.teragrid.org "/>
> > <filesystem provider="gsiftp" url="gsiftp://
> > gridftp.ranger.tacc.teragrid.org "/>
> > <profile namespace="globus" key="maxtime">28800</profile>
> > <profile namespace="globus" key="maxWallTime">00:15:00</profile>
> > <profile namespace="globus" key="jobsPerNode">1</profile>
> > <profile namespace="globus" key="nodeGranularity">64</profile>
> > <profile namespace="globus" key="maxNodes">256</profile>
> > <profile namespace="globus" key="queue">normal</profile>
> > <profile namespace="karajan" key="jobThrottle">1</profile>
> > <profile namespace="globus" key="project">TG-DBS080004N</profile>
> > <profile namespace="globus" key="pe">16way</profile>
> > <profile namespace="karajan" key="initialScore">10000</profile>
> > <workdirectory>/work/00043/tg457040/sidgrid_out/skenny</workdirectory>
> > </pool>
> > </config>
> >
> >
> >
> > On Mon, Oct 10, 2011 at 3:43 PM, Sarah Kenny < skenny at uchicago.edu >
> > wrote:
> >
> >
> > ok, thanks, got in the queue now...also, realized my last run may have
> > been using the old swift. apparently i had SWIFT_HOME set in my env
> > and that overrides the newer swift i had set in my PATH.
> >
> > ~sk
> >
> >
> >
> > On Mon, Oct 10, 2011 at 12:28 PM, David Kelly < davidk at ci.uchicago.edu
> > > wrote:
> >
> >
> >
> >
> >
> > Sarah,
> >
> > Can you give this another try with the latest 0.93? I made some
> > changes to the coaster and sge providers and was able to get it
> > working with a simple catns script. Here is the configuration file I
> > was using:
> >
> > <config>
> > <pool handle="ranger">
> > <execution provider="coaster" jobManager="gt2:SGE" url="
> > gatekeeper.ranger.tacc.teragrid.org "/>
> >
> > <filesystem provider="gsiftp" url="gsiftp://
> > gridftp.ranger.tacc.teragrid.org "/>
> > <profile namespace="globus" key="maxtime">3600</profile>
> > <profile namespace="globus" key="maxWallTime">00:00:03</profile>
> > <profile namespace="globus" key="jobsPerNode">1</profile>
> > <profile namespace="globus" key="nodeGranularity">16</profile>
> > <profile namespace="globus" key="maxNodes">16</profile>
> > <profile namespace="globus" key="queue">development</profile>
> > <profile namespace="karajan" key="jobThrottle">0.9</profile>
> >
> > <profile namespace="globus" key="project">TG-DBS080004N</profile>
> >
> > <profile namespace="globus" key="pe">16way</profile>
> > <workdirectory>/share/home/01503/davidkel/swiftwork</workdirectory>
> > </pool>
> > </config>
> >
> > Thanks,
> >
> > David
> >
> > ----- Original Message -----
> >
> > > From: "Sarah Kenny" < skenny at uchicago.edu >
> > > To: "Justin M Wozniak" < wozniak at mcs.anl.gov >
> > > Cc: "Swift Devel" < swift-devel at ci.uchicago.edu >, "Swift User" <
> > > swift-user at ci.uchicago.edu >
> >
> >
> >
> > > Sent: Friday, October 7, 2011 3:13:57 PM
> > > Subject: Re: [Swift-user] gram on ranger
> > > /home/skenny/swift_logs/dummy-20111005-0126-6575n7x5.log
> > >
> > > on ci
> > >
> > >
> > > On Fri, Oct 7, 2011 at 8:16 AM, Justin M Wozniak <
> > > wozniak at mcs.anl.gov
> > > > wrote:
> > >
> > >
> > >
> > > Can I take a look at the log?
> > >
> > >
> > >
> > >
> > > On Thu, 6 Oct 2011, Sarah Kenny wrote:
> > >
> > >
> > >
> > > hey all, i'm trying to submit to gram on ranger using the latest
> > > swift
> > > (built from trunk). it failes like so:
> > >
> > > Cannot submit job
> > > Caused by:
> > > org.globus.cog.abstraction. impl.common.task.
> > > TaskSubmissionException:
> > > Cannot
> > > submit job
> > > Caused by: org.globus.gram.GramException: Parameter not supported
> > > Cannot submit job
> > >
> > > the gram log was saying first that 'jobsPerNode' is not supported so
> > > i
> > > changed it to workersPerNode and then it was saying 'maxnodes' is
> > > not
> > > supported. here's my sites file:
> > >
> > > <config>
> > > <pool handle="RANGER">
> > > <profile namespace="karajan" key="initialScore">10000</ profile>
> > > <profile namespace="karajan" key="jobThrottle">1</profile>
> > > <profile namespace="globus" key="maxWallTime">00:15:00</ profile>
> > > <profile namespace="globus" key="maxTime">86400</profile>
> > > <profile namespace="globus" key="slots">1</profile>
> > > <profile namespace="globus" key="maxNodes">256</profile>
> > > <profile namespace="globus" key="pe">16way</profile>
> > > <profile namespace="globus" key="workersPerNode">1</ profile>
> > > <profile namespace="globus" key="nodeGranularity">64</ profile>
> > > <profile namespace="globus" key="queue">normal</profile>
> > > <profile namespace="globus" key="project">TG-DBS080004N</ profile>
> > > <filesystem provider="gsiftp" url="gsiftp://
> > > gridftp.ranger.tacc.teragrid. org "/>
> >
> > > <execution provider="coaster" jobManager="gt2:gt2:SGE" url="
> > > gatekeeper.ranger.tacc. teragrid.org "/>
> >
> > > <execution provider="gt2" jobManager="SGE" url="
> > > gatekeeper.ranger.tacc. teragrid.org "/>
> > > <workdirectory>/work/00043/ tg457040</workdirectory>
> >
> > > </pool>
> > > </config>
> > >
> > > thoughts? ideas?
> > >
> > > --
> > > Justin M Wozniak
> > >
> > >
> > >
> > > --
> > > Sarah Kenny
> > > Programmer ~ Brain Circuits Laboratory ~ Rm 2224 Bio Sci III
> > > University of California Irvine, Dept. of Neurology ~ 773-818-8300
> > >
> > >
> > > _______________________________________________
> > > Swift-user mailing list
> > > Swift-user at ci.uchicago.edu
> > > https://lists.ci.uchicago.edu/cgi-bin/mailman/listinfo/swift-user
> >
> >
> >
> >
> >
> >
> > --
> > Sarah Kenny
> > Programmer ~ Brain Circuits Laboratory ~ Rm 2224 Bio Sci III
> > University of California Irvine, Dept. of Neurology ~ 773-818-8300
> >
> >
> >
> >
> > --
> > Sarah Kenny
> > Programmer ~ Brain Circuits Laboratory ~ Rm 2224 Bio Sci III
> > University of California Irvine, Dept. of Neurology ~ 773-818-8300
>

-- 
Sarah Kenny
Programmer ~ Brain Circuits Laboratory ~ Rm 2224 Bio Sci III
University of California Irvine, Dept. of Neurology ~ 773-818-8300
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